Wall clock time and date at job start Tue Mar 31 2020 12:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99631 * 2 1 4 4 H 1.48504 * 109.47301 * 269.99833 * 3 2 1 5 5 H 1.48498 * 109.47342 * 30.00043 * 3 2 1 6 6 H 1.48504 * 109.46903 * 150.00528 * 3 2 1 7 7 C 1.37882 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99673 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99876 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99984 * 95.13961 * 10 9 7 12 12 C 1.50698 * 109.47372 * 270.00364 * 11 10 9 13 13 C 1.38226 * 119.61664 * 95.00143 * 12 11 10 14 14 C 1.38630 * 119.16398 * 179.97438 * 13 12 11 15 15 C 1.38673 * 118.41608 * 359.97438 * 14 13 12 16 16 C 1.38183 * 119.16436 * 0.02562 * 15 14 13 17 17 N 1.31855 * 119.61873 * 274.97765 * 12 11 10 18 18 C 1.34773 * 120.00297 * 275.14809 * 10 9 7 19 19 O 1.21287 * 120.00258 * 174.75936 * 18 10 9 20 20 C 1.50704 * 120.00035 * 354.75444 * 18 10 9 21 21 H 1.09004 * 109.38716 * 34.84959 * 20 18 10 22 22 C 1.52582 * 109.39088 * 275.14896 * 20 18 10 23 23 C 1.52573 * 110.72701 * 169.17694 * 22 20 18 24 24 C 1.53094 * 109.96203 * 70.66928 * 23 22 20 25 25 S 1.81748 * 108.84074 * 296.97807 * 24 23 22 26 26 C 1.53091 * 109.39098 * 154.64952 * 20 18 10 27 27 H 0.97000 * 120.00472 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47269 * 59.99729 * 9 7 2 29 29 H 1.09002 * 109.47247 * 299.99875 * 9 7 2 30 30 H 1.09000 * 109.47292 * 150.00298 * 11 10 9 31 31 H 1.08997 * 109.46757 * 30.00741 * 11 10 9 32 32 H 1.08006 * 120.42360 * 359.97438 * 13 12 11 33 33 H 1.08001 * 120.79275 * 180.02562 * 14 13 12 34 34 H 1.08000 * 120.41565 * 179.72677 * 15 14 13 35 35 H 1.07999 * 119.61439 * 179.97438 * 16 15 14 36 36 H 1.09007 * 109.22210 * 289.49709 * 22 20 18 37 37 H 1.08997 * 109.22862 * 48.84768 * 22 20 18 38 38 H 1.09005 * 109.38616 * 310.52107 * 23 22 20 39 39 H 1.08999 * 109.31101 * 190.77660 * 23 22 20 40 40 H 1.08996 * 109.58211 * 177.16942 * 24 23 22 41 41 H 1.09001 * 109.56886 * 56.78226 * 24 23 22 42 42 H 1.08997 * 109.57911 * 302.98320 * 26 20 18 43 43 H 1.09003 * 109.57682 * 63.24134 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 3.9999 -2.5751 -0.0010 11 6 4.3508 -3.2281 -1.2647 12 6 3.1370 -3.9237 -1.8247 13 6 2.3480 -3.2763 -2.7569 14 6 1.2339 -3.9253 -3.2662 15 6 0.9541 -5.2071 -2.8173 16 6 1.7888 -5.7907 -1.8834 17 7 2.8402 -5.1431 -1.4202 18 6 4.1264 -3.2451 1.1615 19 8 4.4392 -4.4169 1.1552 20 6 3.8791 -2.5383 2.4694 21 1 3.0812 -1.8069 2.3402 22 6 5.1535 -1.8226 2.9073 23 6 4.8713 -0.8845 4.0770 24 6 4.5818 -1.6980 5.3412 25 16 3.0784 -2.6835 5.0736 26 6 3.4638 -3.5616 3.5296 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6802 0.8888 29 1 3.8745 -0.6799 -0.8911 30 1 5.1399 -3.9593 -1.0890 31 1 4.7009 -2.4795 -1.9754 32 1 2.5962 -2.2775 -3.0843 33 1 0.5994 -3.4443 -3.9960 34 1 0.0919 -5.7407 -3.1892 35 1 1.5775 -6.7886 -1.5284 36 1 5.8943 -2.5623 3.2110 37 1 5.5464 -1.2450 2.0706 38 1 4.0079 -0.2622 3.8415 39 1 5.7401 -0.2486 4.2468 40 1 4.4307 -1.0228 6.1834 41 1 5.4214 -2.3614 5.5486 42 1 2.5822 -4.1040 3.1881 43 1 4.2807 -4.2628 3.7001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579783500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:23 Heat of formation + Delta-G solvation = -5.436506 kcal Electronic energy + Delta-G solvation = -25691.701758 eV Core-core repulsion = 22248.728681 eV Total energy + Delta-G solvation = -3442.973078 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99054 -39.16591 -36.12193 -35.23558 -32.76537 -31.97559 -31.64420 -30.97424 -28.22818 -27.17333 -26.28331 -23.55316 -23.04503 -22.37924 -21.70209 -20.71359 -18.35083 -17.13106 -17.09835 -16.36240 -15.83697 -15.81591 -15.27320 -15.16459 -14.83058 -14.49344 -14.24034 -13.74196 -13.42207 -13.24957 -13.06769 -12.96355 -12.77712 -12.63028 -12.39139 -12.17754 -12.04900 -11.66038 -11.31729 -11.26733 -11.18382 -11.06541 -10.78347 -10.64352 -10.49573 -10.31854 -9.66612 -9.54064 -9.36876 -9.02419 -8.92961 -8.75813 -8.48339 -7.81315 -7.44046 -6.22663 -4.24280 1.55691 1.81096 1.98491 2.70715 3.12819 3.20001 3.23511 3.31177 3.78166 4.23047 4.43232 4.75338 4.79892 4.87981 5.01810 5.06771 5.13851 5.18255 5.25369 5.30271 5.44748 5.50342 5.59050 5.65039 5.70016 5.78692 5.84335 5.91476 5.97275 6.03190 6.13984 6.21197 6.22074 6.25055 6.35327 6.49086 6.58879 6.63484 6.65655 7.16715 7.27018 7.39821 8.08302 8.36606 8.54730 8.83072 8.92706 9.35929 10.89817 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.005971 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.983899 B = 4688.489213 C = 6206.279865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.206 3.794 10 N -0.588 5.588 11 C 0.172 3.828 12 C 0.121 3.879 13 C -0.132 4.132 14 C -0.078 4.078 15 C -0.179 4.179 16 C 0.087 3.913 17 N -0.459 5.459 18 C 0.530 3.470 19 O -0.545 6.545 20 C -0.111 4.111 21 H 0.125 0.875 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.081 4.081 25 S -0.269 6.269 26 C -0.050 4.050 27 H 0.266 0.734 28 H 0.036 0.964 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -2.700 0.351 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.693 3.307 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.095 0.905 9 C 0.085 3.915 10 N -0.319 5.319 11 C 0.047 3.953 12 C -0.019 4.019 13 C -0.152 4.152 14 C -0.105 4.105 15 C -0.199 4.199 16 C -0.070 4.070 17 N -0.168 5.168 18 C 0.316 3.684 19 O -0.423 6.423 20 C -0.134 4.134 21 H 0.143 0.857 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.230 4.230 25 S -0.041 6.041 26 C -0.199 4.199 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.947 -3.636 1.640 8.892 hybrid contribution 0.354 1.575 -1.466 2.180 sum 8.301 -2.061 0.174 8.555 Atomic orbital electron populations 1.69885 1.06191 1.27062 1.49249 1.24848 0.94643 0.98615 0.94340 0.87014 0.80562 0.84380 0.78790 1.20070 1.20889 1.18783 1.21308 0.88806 0.94881 1.52350 0.90515 1.19907 0.96186 0.77844 0.97569 1.47875 1.64337 1.15373 1.04299 1.20128 0.93120 0.96042 0.85979 1.21548 0.97208 0.90496 0.92623 1.21909 0.95441 1.00280 0.97596 1.21472 0.96122 0.94278 0.98585 1.22033 1.01038 0.96693 1.00108 1.22624 0.90972 0.99525 0.93886 1.67544 1.17457 1.08773 1.23041 1.20250 0.76460 0.86472 0.85184 1.90656 1.48357 1.15690 1.87555 1.21576 1.00871 0.98811 0.92148 0.85662 1.21420 0.96445 0.98650 0.98705 1.21729 1.03085 0.97983 0.93203 1.23424 0.97752 1.00569 1.01207 1.86852 1.27754 1.56730 1.32782 1.23212 1.05656 0.98444 0.92586 0.92421 0.94617 0.95334 0.89290 0.89591 0.84974 0.85408 0.85621 0.83631 0.91615 0.90596 0.89927 0.90812 0.88062 0.90131 0.87662 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 13.96 55.43 0.77 -24.37 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 19.02 27.47 -169.99 -4.67 14.36 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 7 C -0.54 -13.44 9.25 -34.44 -0.32 -13.76 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.21 4.27 3.91 -5.20 -0.02 4.25 16 10 N -0.59 -11.56 2.45 -176.44 -0.43 -11.99 16 11 C 0.17 3.05 5.72 -5.19 -0.03 3.02 16 12 C 0.12 2.28 6.36 -82.59 -0.53 1.76 16 13 C -0.13 -2.33 9.72 -39.44 -0.38 -2.72 16 14 C -0.08 -1.27 10.18 -39.28 -0.40 -1.67 16 15 C -0.18 -2.74 10.11 -39.44 -0.40 -3.14 16 16 C 0.09 1.48 11.18 -17.55 -0.20 1.29 16 17 N -0.46 -9.08 10.27 -9.47 -0.10 -9.17 16 18 C 0.53 10.64 6.68 -10.99 -0.07 10.57 16 19 O -0.54 -12.02 15.80 5.55 0.09 -11.93 16 20 C -0.11 -1.99 1.54 -91.94 -0.14 -2.13 16 21 H 0.13 2.56 6.15 -51.93 -0.32 2.24 16 22 C -0.11 -1.66 4.60 -27.16 -0.12 -1.79 16 23 C -0.12 -1.55 5.75 -26.90 -0.15 -1.70 16 24 C -0.08 -1.00 6.46 37.21 0.24 -0.76 16 25 S -0.27 -4.24 22.33 -107.50 -2.40 -6.64 16 26 C -0.05 -0.86 5.21 37.20 0.19 -0.67 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 28 H 0.04 0.73 4.73 -51.93 -0.25 0.48 16 29 H 0.03 0.56 7.26 -51.93 -0.38 0.19 16 30 H 0.09 1.58 7.50 -51.93 -0.39 1.19 16 31 H 0.09 1.27 7.76 -51.93 -0.40 0.87 16 32 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 33 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.49 16 37 H 0.08 1.10 7.32 -51.93 -0.38 0.72 16 38 H 0.08 1.18 8.05 -51.93 -0.42 0.77 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 43 H 0.09 1.47 7.98 -51.93 -0.41 1.05 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -30.78 361.17 -10.07 -40.85 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.34 Total: 8.94 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.43 Total: -5.48 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.24 Total: -45.54 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.67 Total: 14.36 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.40 Total: -6.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.78 -10.07 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579783500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.409 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds