Wall clock time and date at job start Tue Mar 31 2020 12:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.68374 * 2 1 4 4 N 1.46904 * 109.47241 * 59.46674 * 3 2 1 5 5 C 1.46891 * 111.00250 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47278 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46986 * 55.00108 * 6 5 4 8 8 C 1.47206 * 109.47021 * 295.00292 * 6 5 4 9 9 N 5.62769 * 61.99238 * 28.04802 * 2 1 3 10 10 C 1.52997 * 109.47415 * 175.00226 * 6 5 4 11 11 C 1.50702 * 109.47345 * 185.00243 * 10 6 5 12 12 H 1.08004 * 119.99515 * 359.97438 * 11 10 6 13 13 C 1.37877 * 119.99986 * 179.97438 * 11 10 6 14 14 N 1.31518 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99746 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47309 * 59.99815 * 15 13 11 17 17 H 1.48500 * 109.46907 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47037 * 299.99824 * 15 13 11 19 19 O 1.43012 * 109.72384 * 120.56307 * 2 1 3 20 20 C 1.43060 * 114.23508 * 67.65836 * 19 2 1 21 21 C 1.53431 * 109.07567 * 71.27988 * 20 19 2 22 22 C 1.51402 * 107.89835 * 312.52967 * 21 20 19 23 23 S 1.75520 * 126.27270 * 195.53282 * 22 21 20 24 24 C 1.75811 * 91.03394 * 179.97438 * 23 22 21 25 25 C 1.33063 * 109.61860 * 0.02562 * 24 23 22 26 26 C 1.34874 * 123.68376 * 15.50555 * 22 21 20 27 27 H 1.09004 * 109.47241 * 59.99482 * 1 2 3 28 28 H 1.08998 * 109.46877 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47169 * 299.99467 * 1 2 3 30 30 H 1.08995 * 109.47521 * 299.45934 * 3 2 1 31 31 H 1.09007 * 109.46927 * 179.46339 * 3 2 1 32 32 H 1.00903 * 110.99761 * 303.95429 * 4 3 2 33 33 H 1.09006 * 109.47007 * 60.00330 * 5 4 3 34 34 H 1.09000 * 109.47328 * 299.99801 * 5 4 3 35 35 H 1.09001 * 109.46992 * 305.00579 * 10 6 5 36 36 H 1.08998 * 109.47097 * 64.99767 * 10 6 5 37 37 H 0.96993 * 119.99693 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.54714 * 311.39289 * 20 19 2 39 39 H 1.09004 * 109.59890 * 191.19415 * 20 19 2 40 40 H 1.09002 * 109.77704 * 192.93014 * 21 20 19 41 41 H 1.08999 * 109.81910 * 72.15297 * 21 20 19 42 42 H 1.08001 * 125.19157 * 179.97438 * 24 23 22 43 43 H 1.07998 * 122.18503 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0454 1.4406 0.0000 4 7 1.5478 2.1387 1.1930 5 6 2.0242 3.5278 1.2271 6 6 1.4861 4.2209 2.4805 7 1 1.7647 3.6442 3.3625 8 6 0.0193 4.3140 2.3983 9 7 -1.1126 4.3851 2.3363 10 6 2.0815 5.6266 2.5814 11 6 1.6492 6.2635 3.8770 12 1 1.0131 5.7200 4.5600 13 6 2.0659 7.5399 4.1905 14 7 2.8410 8.2014 3.3590 15 14 1.5307 8.3289 5.7968 16 1 2.0088 7.5055 6.9363 17 1 2.1085 9.6934 5.8946 18 1 0.0487 8.4155 5.8361 19 8 2.0127 -0.6845 1.1592 20 6 1.7441 -2.0897 1.1657 21 6 2.6341 -2.7752 0.1207 22 6 2.5390 -1.9807 -1.1646 23 16 3.0391 -2.5201 -2.7582 24 6 2.5429 -0.9896 -3.4669 25 6 2.0538 -0.1956 -2.5179 26 6 2.0431 -0.7284 -1.2350 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6920 1.9530 -0.8947 31 1 3.1354 1.4365 0.0096 32 1 0.5407 2.1001 1.2407 33 1 1.6707 4.0550 0.3408 34 1 3.1140 3.5379 1.2454 35 1 3.1693 5.5634 2.5527 36 1 1.7306 6.2307 1.7447 37 1 3.1344 9.0992 3.5798 38 1 0.6959 -2.2617 0.9211 39 1 1.9598 -2.4986 2.1529 40 1 2.2859 -3.7941 -0.0489 41 1 3.6670 -2.7916 0.4685 42 1 2.6237 -0.7328 -4.5129 43 1 1.6886 0.7982 -2.7311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589573860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:09 Heat of formation + Delta-G solvation = 6.090874 kcal Electronic energy + Delta-G solvation = -24151.004184 eV Core-core repulsion = 20708.530971 eV Total energy + Delta-G solvation = -3442.473213 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.46958 -37.43634 -36.73143 -35.43390 -33.81994 -32.81556 -31.82293 -30.66861 -28.13144 -27.12240 -25.41332 -24.56514 -22.80216 -22.06872 -21.75946 -21.22979 -18.21270 -17.68360 -16.96727 -16.68931 -16.51958 -15.80655 -15.14681 -14.98910 -14.83464 -14.63370 -14.11430 -14.05404 -13.63939 -13.47813 -13.07548 -12.93051 -12.68920 -12.53922 -12.49875 -12.23415 -12.08740 -12.06141 -11.84136 -11.54661 -11.34547 -11.29861 -11.22612 -10.99024 -10.70949 -10.61537 -10.45794 -10.22510 -9.72772 -9.51592 -9.21948 -8.84570 -8.62980 -8.42939 -8.25000 -6.07239 -4.10214 0.68962 1.31875 1.69028 2.36480 3.33218 3.37114 3.40876 3.55601 3.58639 3.64704 4.15146 4.35024 4.42263 4.48324 4.68331 4.77603 4.82745 4.88587 4.89133 5.01034 5.05808 5.30692 5.32208 5.37940 5.45604 5.46852 5.52451 5.60247 5.63265 5.74816 5.78042 5.84469 6.02159 6.08029 6.18068 6.20284 6.39152 6.58256 7.03135 7.17200 7.45692 7.48950 7.56030 7.87846 8.25795 8.41911 8.94142 9.55022 11.03675 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.002443 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.638172 B =11459.621838 C =11709.614518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.185 3.815 3 C 0.079 3.921 4 N -0.682 5.682 5 C 0.068 3.932 6 C 0.007 3.993 7 H 0.112 0.888 8 C 0.242 3.758 9 N -0.478 5.478 10 C 0.033 3.967 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.277 1.277 19 O -0.343 6.343 20 C 0.059 3.941 21 C -0.082 4.082 22 C -0.172 4.172 23 S 0.098 5.902 24 C -0.216 4.216 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.337 0.663 33 H 0.034 0.966 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.165 0.835 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -23.904 -13.057 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.142 3.858 3 C -0.051 4.051 4 N -0.314 5.314 5 C -0.062 4.062 6 C -0.015 4.015 7 H 0.130 0.870 8 C -0.074 4.074 9 N -0.155 5.155 10 C -0.006 4.006 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.203 1.203 19 O -0.261 6.261 20 C -0.020 4.020 21 C -0.122 4.122 22 C -0.290 4.290 23 S 0.364 5.636 24 C -0.351 4.351 25 C -0.148 4.148 26 C -0.144 4.144 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.157 0.843 33 H 0.052 0.948 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.183 0.817 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.193 -25.098 -13.260 28.411 hybrid contribution -1.082 2.079 0.327 2.366 sum 0.111 -23.020 -12.933 26.404 Atomic orbital electron populations 1.22367 0.94785 1.02826 1.03264 1.20319 0.92597 0.91361 0.81475 1.21867 1.01426 0.89972 0.91826 1.60492 1.15836 1.15392 1.39671 1.22089 1.01401 0.86334 0.96395 1.19339 0.81182 1.02034 0.98987 0.86985 1.29343 0.95257 0.91012 0.91822 1.81020 1.13430 1.11002 1.10091 1.19157 0.96857 0.86580 0.97984 1.21118 1.31185 1.00025 1.04104 0.92543 1.24951 0.94895 0.97164 0.96964 1.69929 1.34674 1.12358 1.36136 0.86652 0.78994 0.78438 0.83986 1.19990 1.21218 1.20299 1.88211 1.79395 1.18589 1.39895 1.22683 0.97882 0.82360 0.99038 1.21008 1.02570 0.98059 0.90543 1.24760 1.06962 0.98782 0.98466 1.84070 1.63055 1.17172 0.99304 1.25402 1.08687 0.97520 1.03477 1.19916 1.02155 1.01365 0.91319 1.20127 1.03594 0.94618 0.96038 0.91441 0.91992 0.90525 0.93735 0.89701 0.84346 0.94824 0.88940 0.94167 0.95794 0.92764 0.92557 0.87909 0.89722 0.89221 0.81709 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 8.18 37.16 0.30 -1.49 16 2 C 0.18 2.05 0.86 -90.98 -0.08 1.97 16 3 C 0.08 0.93 4.63 -3.82 -0.02 0.91 16 4 N -0.68 -9.36 6.36 -113.78 -0.72 -10.08 16 5 C 0.07 1.02 5.12 -3.83 -0.02 1.00 16 6 C 0.01 0.12 2.42 -93.40 -0.23 -0.10 16 7 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 8 C 0.24 4.91 12.98 -20.76 -0.27 4.64 16 9 N -0.48 -10.39 18.54 42.15 0.78 -9.61 16 10 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 11 C -0.53 -14.10 8.60 -34.44 -0.30 -14.40 16 12 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 O -0.34 -4.17 10.03 -35.23 -0.35 -4.52 16 20 C 0.06 0.52 6.71 37.38 0.25 0.77 16 21 C -0.08 -0.66 6.55 -27.31 -0.18 -0.84 16 22 C -0.17 -1.68 6.44 -35.16 -0.23 -1.90 16 23 S 0.10 0.82 23.32 -107.50 -2.51 -1.68 16 24 C -0.22 -1.81 11.21 28.93 0.32 -1.49 16 25 C -0.12 -1.11 9.47 -41.13 -0.39 -1.49 16 26 C -0.13 -1.36 4.73 -104.78 -0.50 -1.86 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 29 H 0.08 0.85 6.58 -51.93 -0.34 0.51 16 30 H 0.04 0.48 7.29 -51.93 -0.38 0.10 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.34 4.72 5.85 -39.29 -0.23 4.49 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.06 0.46 6.29 -51.93 -0.33 0.14 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.14 1.15 7.37 -52.49 -0.39 0.77 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -30.76 365.46 -9.31 -40.07 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.19 Total: 0.84 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.54 Total: -12.01 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.79 Total: -44.63 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.35 Total: -4.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.76 -9.31 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589573860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.156 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds