Wall clock time and date at job start Tue Mar 31 2020 12:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.68374 * 2 1 4 4 N 1.46904 * 109.47241 * 59.46674 * 3 2 1 5 5 C 1.46891 * 111.00250 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47278 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46986 * 55.00108 * 6 5 4 8 8 C 1.47206 * 109.47021 * 295.00292 * 6 5 4 9 9 N 5.62769 * 61.99238 * 28.04802 * 2 1 3 10 10 C 1.52997 * 109.47415 * 175.00226 * 6 5 4 11 11 C 1.50702 * 109.47345 * 185.00243 * 10 6 5 12 12 H 1.08004 * 119.99515 * 359.97438 * 11 10 6 13 13 C 1.37877 * 119.99986 * 179.97438 * 11 10 6 14 14 N 1.31518 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99746 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47309 * 59.99815 * 15 13 11 17 17 H 1.48500 * 109.46907 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47037 * 299.99824 * 15 13 11 19 19 O 1.43012 * 109.72384 * 120.56307 * 2 1 3 20 20 C 1.43060 * 114.23508 * 67.65836 * 19 2 1 21 21 C 1.53431 * 109.07567 * 71.27988 * 20 19 2 22 22 C 1.51402 * 107.89835 * 312.52967 * 21 20 19 23 23 S 1.75520 * 126.27270 * 195.53282 * 22 21 20 24 24 C 1.75811 * 91.03394 * 179.97438 * 23 22 21 25 25 C 1.33063 * 109.61860 * 0.02562 * 24 23 22 26 26 C 1.34874 * 123.68376 * 15.50555 * 22 21 20 27 27 H 1.09004 * 109.47241 * 59.99482 * 1 2 3 28 28 H 1.08998 * 109.46877 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47169 * 299.99467 * 1 2 3 30 30 H 1.08995 * 109.47521 * 299.45934 * 3 2 1 31 31 H 1.09007 * 109.46927 * 179.46339 * 3 2 1 32 32 H 1.00903 * 110.99761 * 303.95429 * 4 3 2 33 33 H 1.09006 * 109.47007 * 60.00330 * 5 4 3 34 34 H 1.09000 * 109.47328 * 299.99801 * 5 4 3 35 35 H 1.09001 * 109.46992 * 305.00579 * 10 6 5 36 36 H 1.08998 * 109.47097 * 64.99767 * 10 6 5 37 37 H 0.96993 * 119.99693 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.54714 * 311.39289 * 20 19 2 39 39 H 1.09004 * 109.59890 * 191.19415 * 20 19 2 40 40 H 1.09002 * 109.77704 * 192.93014 * 21 20 19 41 41 H 1.08999 * 109.81910 * 72.15297 * 21 20 19 42 42 H 1.08001 * 125.19157 * 179.97438 * 24 23 22 43 43 H 1.07998 * 122.18503 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0454 1.4406 0.0000 4 7 1.5478 2.1387 1.1930 5 6 2.0242 3.5278 1.2271 6 6 1.4861 4.2209 2.4805 7 1 1.7647 3.6442 3.3625 8 6 0.0193 4.3140 2.3983 9 7 -1.1126 4.3851 2.3363 10 6 2.0815 5.6266 2.5814 11 6 1.6492 6.2635 3.8770 12 1 1.0131 5.7200 4.5600 13 6 2.0659 7.5399 4.1905 14 7 2.8410 8.2014 3.3590 15 14 1.5307 8.3289 5.7968 16 1 2.0088 7.5055 6.9363 17 1 2.1085 9.6934 5.8946 18 1 0.0487 8.4155 5.8361 19 8 2.0127 -0.6845 1.1592 20 6 1.7441 -2.0897 1.1657 21 6 2.6341 -2.7752 0.1207 22 6 2.5390 -1.9807 -1.1646 23 16 3.0391 -2.5201 -2.7582 24 6 2.5429 -0.9896 -3.4669 25 6 2.0538 -0.1956 -2.5179 26 6 2.0431 -0.7284 -1.2350 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6920 1.9530 -0.8947 31 1 3.1354 1.4365 0.0096 32 1 0.5407 2.1001 1.2407 33 1 1.6707 4.0550 0.3408 34 1 3.1140 3.5379 1.2454 35 1 3.1693 5.5634 2.5527 36 1 1.7306 6.2307 1.7447 37 1 3.1344 9.0992 3.5798 38 1 0.6959 -2.2617 0.9211 39 1 1.9598 -2.4986 2.1529 40 1 2.2859 -3.7941 -0.0489 41 1 3.6670 -2.7916 0.4685 42 1 2.6237 -0.7328 -4.5129 43 1 1.6886 0.7982 -2.7311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589573860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:08 Heat of formation + Delta-G solvation = -11.901982 kcal Electronic energy + Delta-G solvation = -24151.784413 eV Core-core repulsion = 20708.530971 eV Total energy + Delta-G solvation = -3443.253442 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22940 -38.85346 -37.46794 -36.72141 -35.53063 -34.14336 -32.90726 -31.84881 -28.84300 -28.64582 -26.61684 -25.37027 -24.13460 -23.53317 -22.75607 -22.08280 -18.97970 -18.55036 -18.32963 -18.19863 -17.73832 -16.89897 -16.59750 -15.93368 -15.81524 -15.56096 -15.25055 -14.86858 -14.77149 -14.74433 -14.26914 -14.21138 -13.92916 -13.83373 -13.58332 -13.32568 -13.26206 -13.05424 -12.92292 -12.86401 -12.69147 -12.53663 -12.45349 -12.30436 -12.10846 -11.98597 -11.93309 -11.44114 -11.29155 -11.08261 -10.53631 -10.48208 -9.50537 -9.34352 -9.29685 -8.18239 -6.26399 0.01657 0.66821 1.03064 1.42162 1.43198 1.50617 1.66395 1.94906 1.97535 2.42556 2.80789 3.14542 3.16742 3.26450 3.66909 3.72665 3.89800 3.97394 4.12737 4.21740 4.26837 4.38555 4.41085 4.42681 4.57646 4.61901 4.69993 4.74353 4.81206 4.86257 4.92099 4.95776 4.97224 5.01456 5.15608 5.23743 5.38931 5.48662 5.49437 5.64086 5.80625 5.98169 6.22141 6.30025 6.42131 6.76024 6.88316 7.41924 8.92548 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.002443 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.638172 B =11459.621838 C =11709.614518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.187 3.813 3 C 0.079 3.921 4 N -0.684 5.684 5 C 0.079 3.921 6 C 0.019 3.981 7 H 0.121 0.879 8 C 0.252 3.748 9 N -0.503 5.503 10 C 0.039 3.961 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.948 3.052 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.281 1.281 19 O -0.369 6.369 20 C 0.053 3.947 21 C -0.080 4.080 22 C -0.188 4.188 23 S 0.115 5.885 24 C -0.216 4.216 25 C -0.133 4.133 26 C -0.145 4.145 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.336 0.664 33 H 0.036 0.964 34 H 0.103 0.897 35 H 0.036 0.964 36 H 0.002 0.998 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.186 0.814 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -25.280 -13.371 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.144 3.856 3 C -0.050 4.050 4 N -0.316 5.316 5 C -0.052 4.052 6 C -0.003 4.003 7 H 0.139 0.861 8 C -0.064 4.064 9 N -0.180 5.180 10 C 0.000 4.000 11 C -0.578 4.578 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.563 5.563 15 Si 0.774 3.226 16 H -0.188 1.188 17 H -0.207 1.207 18 H -0.206 1.206 19 O -0.288 6.288 20 C -0.025 4.025 21 C -0.120 4.120 22 C -0.305 4.305 23 S 0.381 5.619 24 C -0.351 4.351 25 C -0.163 4.163 26 C -0.158 4.158 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.155 0.845 33 H 0.055 0.945 34 H 0.121 0.879 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.204 0.796 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.323 -26.495 -13.574 29.799 hybrid contribution -1.108 2.448 0.387 2.715 sum 0.215 -24.048 -13.187 27.427 Atomic orbital electron populations 1.22326 0.94474 1.03164 1.02894 1.20241 0.92784 0.90770 0.81780 1.21898 1.01042 0.90661 0.91372 1.60450 1.15759 1.14351 1.41069 1.21928 1.01771 0.86958 0.94497 1.19212 0.79941 0.99808 1.01308 0.86144 1.29627 0.95517 0.90304 0.90993 1.81019 1.14230 1.11657 1.11127 1.18977 0.96628 0.88696 0.95665 1.21536 1.30673 1.00314 1.05279 0.92806 1.25715 0.95144 0.97950 0.99972 1.70025 1.35856 1.12714 1.37747 0.85749 0.78209 0.77870 0.80760 1.18816 1.20697 1.20633 1.88156 1.79800 1.20306 1.40498 1.22874 0.98378 0.81015 1.00183 1.21050 1.02524 0.98772 0.89614 1.25065 1.06810 0.98967 0.99669 1.83994 1.62505 1.16987 0.98377 1.25727 1.07695 0.97263 1.04422 1.20047 1.02960 1.02031 0.91243 1.20152 1.04519 0.95068 0.96080 0.90885 0.91321 0.91710 0.92542 0.90271 0.84511 0.94537 0.87916 0.94617 0.97984 0.92705 0.92157 0.86551 0.87723 0.89133 0.79629 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 8.18 71.98 0.59 -2.77 16 2 C 0.19 3.96 0.86 -11.03 -0.01 3.95 16 3 C 0.08 1.81 4.63 86.30 0.40 2.20 16 4 N -0.68 -18.15 6.36 -513.89 -3.27 -21.42 16 5 C 0.08 2.28 5.12 86.31 0.44 2.73 16 6 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 7 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 8 C 0.25 10.10 12.98 89.45 1.16 11.26 16 9 N -0.50 -21.67 18.54 20.01 0.37 -21.30 16 10 C 0.04 1.83 4.42 29.85 0.13 1.96 16 11 C -0.54 -28.90 8.60 25.60 0.22 -28.68 16 12 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 13 C 0.01 0.61 5.46 84.65 0.46 1.08 16 14 N -0.92 -53.40 13.29 21.45 0.28 -53.11 16 15 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 O -0.37 -8.65 10.03 -148.98 -1.49 -10.15 16 20 C 0.05 0.88 6.71 72.13 0.48 1.36 16 21 C -0.08 -1.16 6.55 30.22 0.20 -0.96 16 22 C -0.19 -3.38 6.44 25.14 0.16 -3.22 16 23 S 0.12 1.73 23.32 -56.49 -1.32 0.41 16 24 C -0.22 -3.22 11.21 66.66 0.75 -2.47 16 25 C -0.13 -2.31 9.47 21.27 0.20 -2.11 16 26 C -0.14 -2.85 4.73 -19.96 -0.09 -2.94 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.23 6.54 -2.39 -0.02 1.21 16 29 H 0.06 1.41 6.58 -2.39 -0.02 1.40 16 30 H 0.06 1.14 7.29 -2.39 -0.02 1.13 16 31 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.34 9.15 5.85 -89.69 -0.52 8.62 16 33 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.06 0.92 6.29 -2.39 -0.02 0.90 16 39 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.19 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.15 2.22 7.37 -2.91 -0.02 2.20 16 Total: -1.00 -64.45 365.46 2.16 -62.29 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.50 Total: 15.43 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.06 Total: -17.95 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -2.61 Total: -95.83 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.49 Total: -10.15 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.32 Total: 0.41 kcal Total: -64.45 2.16 -62.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589573860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.387 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds