Wall clock time and date at job start Tue Mar 31 2020 12:16:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86804 * 119.99835 * 2 1
4 4 H 1.48507 * 109.46930 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47099 * 299.99720 * 3 2 1
6 6 H 1.48493 * 109.47406 * 60.00044 * 3 2 1
7 7 C 1.37872 * 120.00308 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00066 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99914 * 0.02562 * 7 2 1
10 10 H 1.09000 * 109.52537 * 59.91072 * 9 7 2
11 11 C 1.53039 * 109.50029 * 179.97438 * 9 7 2
12 12 C 1.53046 * 109.52798 * 181.32171 * 11 9 7
13 13 C 1.53191 * 109.30997 * 298.61471 * 12 11 9
14 14 N 1.46931 * 108.76527 * 54.65907 * 13 12 11
15 15 C 1.34771 * 120.63154 * 126.36003 * 14 13 12
16 16 O 1.21284 * 120.00110 * 180.02562 * 15 14 13
17 17 C 1.50701 * 119.99942 * 0.02562 * 15 14 13
18 18 S 1.81407 * 109.47201 * 180.02562 * 17 15 14
19 19 C 1.81396 * 103.00024 * 180.02562 * 18 17 15
20 20 C 1.50700 * 109.46788 * 180.02562 * 19 18 17
21 21 C 1.38671 * 120.42242 * 90.00239 * 20 19 18
22 22 C 1.38633 * 118.42191 * 180.02562 * 21 20 19
23 23 C 1.38219 * 119.16007 * 359.97438 * 22 21 20
24 24 N 1.31863 * 120.76760 * 0.02562 * 23 22 21
25 25 C 1.31882 * 121.72013 * 359.69843 * 24 23 22
26 26 C 1.46919 * 118.73612 * 306.37786 * 14 13 12
27 27 H 0.96998 * 119.99864 * 359.97438 * 1 2 3
28 28 H 1.09002 * 109.46050 * 301.33758 * 11 9 7
29 29 H 1.09004 * 109.46034 * 61.30973 * 11 9 7
30 30 H 1.08998 * 109.49692 * 58.57850 * 12 11 9
31 31 H 1.09003 * 109.49441 * 178.67822 * 12 11 9
32 32 H 1.08998 * 109.59857 * 294.86728 * 13 12 11
33 33 H 1.09003 * 109.70130 * 174.50265 * 13 12 11
34 34 H 1.08997 * 109.47722 * 299.99929 * 17 15 14
35 35 H 1.09001 * 109.47111 * 60.00343 * 17 15 14
36 36 H 1.09006 * 109.47185 * 299.99802 * 19 18 17
37 37 H 1.09000 * 109.47266 * 60.00106 * 19 18 17
38 38 H 1.07999 * 120.78870 * 359.96959 * 21 20 19
39 39 H 1.08000 * 120.41872 * 180.02562 * 22 21 20
40 40 H 1.07999 * 119.62036 * 179.97438 * 23 22 21
41 41 H 1.08002 * 119.61608 * 180.31720 * 25 24 23
42 42 H 1.08997 * 109.59005 * 293.82473 * 26 14 13
43 43 H 1.09002 * 109.70256 * 173.46709 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2511 -2.4991 0.0005
10 1 0.6233 -2.5573 -0.8886
11 6 2.2451 -3.6628 0.0005
12 6 1.4808 -4.9883 -0.0327
13 6 0.6058 -5.1002 1.2197
14 7 -0.2528 -3.9109 1.3042
15 6 -1.5892 -4.0360 1.4258
16 8 -2.2872 -3.0465 1.4941
17 6 -2.2162 -5.4054 1.4769
18 16 -4.0153 -5.2409 1.6414
19 6 -4.5802 -6.9641 1.6861
20 6 -6.0807 -6.9974 1.8220
21 6 -6.8878 -7.0085 0.6944
22 6 -8.2629 -7.0388 0.8676
23 6 -8.7801 -7.0573 2.1492
24 7 -7.9821 -7.0460 3.1989
25 6 -6.6696 -7.0227 3.0719
26 6 0.3732 -2.5827 1.2532
27 1 -0.4850 0.8400 0.0004
28 1 2.8874 -3.5917 -0.8773
29 1 2.8561 -3.6184 0.9021
30 1 0.8505 -5.0227 -0.9214
31 1 2.1894 -5.8163 -0.0564
32 1 1.2397 -5.1569 2.1046
33 1 -0.0140 -5.9945 1.1563
34 1 -1.9836 -5.9461 0.5596
35 1 -1.8215 -5.9540 2.3321
36 1 -4.2880 -7.4663 0.7638
37 1 -4.1266 -7.4732 2.5365
38 1 -6.4554 -6.9930 -0.2951
39 1 -8.9217 -7.0486 0.0118
40 1 -9.8503 -7.0805 2.2927
41 1 -6.0479 -7.0193 3.9550
42 1 0.9880 -2.4341 2.1408
43 1 -0.3986 -1.8141 1.2104
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597911461.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:16:27
Heat of formation + Delta-G solvation = -5.991891 kcal
Electronic energy + Delta-G solvation = -23662.332411 eV
Core-core repulsion = 20219.335250 eV
Total energy + Delta-G solvation = -3442.997161 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.37843 -39.44310 -36.74484 -33.92674 -33.48089 -32.17164 -31.87903 -30.40612
-29.24567 -27.65871 -25.08613 -24.32906 -23.84193 -22.48254 -21.88119 -19.97238
-18.35196 -17.40509 -16.90688 -16.67772 -16.41496 -16.12162 -15.47618 -15.25593
-14.97773 -14.58067 -14.22927 -13.78084 -13.76701 -13.66863 -13.39424 -13.32324
-13.00625 -12.82529 -12.59081 -12.55940 -12.03751 -11.84768 -11.82427 -11.05396
-10.96481 -10.53350 -10.46895 -10.28019 -10.20230 -9.95128 -9.91739 -9.73095
-9.39345 -9.16428 -9.14413 -8.93617 -8.46284 -7.84432 -7.62771 -6.01655
-4.10862 0.58377 0.99080 1.67051 2.49224 3.11086 3.29096 3.37670
3.40294 3.59211 3.66813 4.11705 4.39857 4.41363 4.43193 4.67931
4.69810 4.79125 4.99698 5.03719 5.13286 5.14676 5.26496 5.28754
5.34490 5.42159 5.48358 5.58418 5.81913 5.90727 5.93628 6.09072
6.24680 6.39665 6.53979 6.61073 6.79229 6.92302 7.08290 7.21238
7.60313 7.69362 7.83012 7.95896 8.16395 8.35463 8.75425 8.93649
9.55204 11.03618
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.021796 B = 0.002533 C = 0.002354
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.331098 B =11052.091300 C =11889.777252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.879 5.879
2 C 0.062 3.938
3 Si 0.892 3.108
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.283 1.283
7 C -0.522 4.522
8 H 0.059 0.941
9 C 0.040 3.960
10 H 0.029 0.971
11 C -0.111 4.111
12 C -0.134 4.134
13 C 0.108 3.892
14 N -0.602 5.602
15 C 0.520 3.480
16 O -0.516 6.516
17 C -0.128 4.128
18 S -0.165 6.165
19 C -0.070 4.070
20 C -0.118 4.118
21 C -0.058 4.058
22 C -0.172 4.172
23 C 0.097 3.903
24 N -0.484 5.484
25 C 0.117 3.883
26 C 0.113 3.887
27 H 0.264 0.736
28 H 0.052 0.948
29 H 0.050 0.950
30 H 0.060 0.940
31 H 0.060 0.940
32 H 0.064 0.936
33 H 0.068 0.932
34 H 0.105 0.895
35 H 0.104 0.896
36 H 0.091 0.909
37 H 0.092 0.908
38 H 0.137 0.863
39 H 0.137 0.863
40 H 0.156 0.844
41 H 0.157 0.843
42 H 0.043 0.957
43 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.692 -19.286 2.349 21.712
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.516 5.516
2 C -0.141 4.141
3 Si 0.720 3.280
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.209 1.209
7 C -0.560 4.560
8 H 0.077 0.923
9 C 0.021 3.979
10 H 0.047 0.953
11 C -0.149 4.149
12 C -0.172 4.172
13 C -0.016 4.016
14 N -0.336 5.336
15 C 0.305 3.695
16 O -0.392 6.392
17 C -0.279 4.279
18 S 0.063 5.937
19 C -0.218 4.218
20 C -0.122 4.122
21 C -0.086 4.086
22 C -0.192 4.192
23 C -0.060 4.060
24 N -0.193 5.193
25 C -0.042 4.042
26 C -0.007 4.007
27 H 0.074 0.926
28 H 0.071 0.929
29 H 0.069 0.931
30 H 0.079 0.921
31 H 0.079 0.921
32 H 0.082 0.918
33 H 0.086 0.914
34 H 0.123 0.877
35 H 0.123 0.877
36 H 0.110 0.890
37 H 0.111 0.889
38 H 0.155 0.845
39 H 0.155 0.845
40 H 0.173 0.827
41 H 0.174 0.826
42 H 0.062 0.938
43 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -11.131 -17.674 3.286 21.144
hybrid contribution 1.759 -0.320 -1.035 2.066
sum -9.372 -17.994 2.251 20.413
Atomic orbital electron populations
1.69890 1.05733 1.26827 1.49196 1.25064 0.94887 0.99315 0.94802
0.86536 0.80014 0.83790 0.77676 1.19795 1.20992 1.20934 1.21098
0.92933 0.90056 1.51940 0.92282 1.18976 0.92610 0.92371 0.93970
0.95315 1.21632 0.98575 0.93995 1.00663 1.21950 0.98646 0.99253
0.97375 1.21668 0.93592 0.87557 0.98762 1.48446 1.04792 1.09181
1.71159 1.19472 0.82830 0.89044 0.78167 1.90769 1.60666 1.38689
1.49067 1.23660 0.96619 1.01388 1.06245 1.87949 1.02807 1.05770
1.97149 1.22351 0.94395 0.99231 1.05840 1.20212 0.94455 1.02506
0.94993 1.21540 0.93528 0.94561 0.98981 1.22153 0.95782 1.02106
0.99141 1.22820 1.00109 0.94883 0.88197 1.67737 1.05079 1.12002
1.34441 1.22705 0.90992 0.94141 0.96389 1.22335 0.98711 0.81006
0.98633 0.92630 0.92932 0.93122 0.92124 0.92150 0.91817 0.91400
0.87682 0.87746 0.89033 0.88899 0.84481 0.84541 0.82692 0.82553
0.93850 0.85849
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.65 11.40 55.43 0.63 -25.02 16
2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16
3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16
4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
7 C -0.52 -13.99 8.56 -34.44 -0.29 -14.28 16
8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16
9 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16
10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
11 C -0.11 -2.13 5.11 -26.69 -0.14 -2.27 16
12 C -0.13 -2.02 6.08 -26.61 -0.16 -2.19 16
13 C 0.11 1.55 6.34 -3.71 -0.02 1.53 16
14 N -0.60 -11.62 2.97 -172.77 -0.51 -12.14 16
15 C 0.52 10.15 7.72 -10.99 -0.08 10.06 16
16 O -0.52 -12.65 15.28 5.55 0.08 -12.56 16
17 C -0.13 -1.73 4.77 36.01 0.17 -1.55 16
18 S -0.17 -2.35 20.86 -107.50 -2.24 -4.59 16
19 C -0.07 -0.64 6.10 36.01 0.22 -0.42 16
20 C -0.12 -1.17 5.16 -104.48 -0.54 -1.70 16
21 C -0.06 -0.52 9.86 -39.28 -0.39 -0.91 16
22 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16
23 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16
24 N -0.48 -5.44 10.36 -13.25 -0.14 -5.58 16
25 C 0.12 1.22 10.86 -17.55 -0.19 1.03 16
26 C 0.11 2.70 5.40 -3.71 -0.02 2.68 16
27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16
29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16
34 H 0.10 1.19 7.69 -51.93 -0.40 0.79 16
35 H 0.10 1.12 7.94 -51.92 -0.41 0.70 16
36 H 0.09 0.70 8.10 -51.92 -0.42 0.28 16
37 H 0.09 0.69 8.09 -51.92 -0.42 0.27 16
38 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16
39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16
40 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16
41 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16
42 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16
43 H 0.12 3.48 5.14 -51.93 -0.27 3.22 16
LS Contribution 364.70 15.07 5.50 5.50
Total: -1.00 -33.50 364.70 -10.46 -43.96
By element:
Atomic # 1 Polarization: 7.40 SS G_CDS: -6.42 Total: 0.98 kcal
Atomic # 6 Polarization: -4.40 SS G_CDS: -2.34 Total: -6.74 kcal
Atomic # 7 Polarization: -42.71 SS G_CDS: -0.02 Total: -42.73 kcal
Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.56 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Atomic # 16 Polarization: -2.35 SS G_CDS: -2.24 Total: -4.59 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -33.50 -10.46 -43.96 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597911461.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.971 kcal
(2) G-P(sol) polarization free energy of solvation -33.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds