Wall clock time and date at job start Tue Mar 31 2020 12:16:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86804 * 119.99835 * 2 1
4 4 H 1.48507 * 109.46930 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47099 * 299.99720 * 3 2 1
6 6 H 1.48493 * 109.47406 * 60.00044 * 3 2 1
7 7 C 1.37872 * 120.00308 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00066 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99914 * 0.02562 * 7 2 1
10 10 H 1.09000 * 109.52537 * 59.91072 * 9 7 2
11 11 C 1.53039 * 109.50029 * 179.97438 * 9 7 2
12 12 C 1.53046 * 109.52798 * 181.32171 * 11 9 7
13 13 C 1.53191 * 109.30997 * 298.61471 * 12 11 9
14 14 N 1.46931 * 108.76527 * 54.65907 * 13 12 11
15 15 C 1.34771 * 120.63154 * 126.36003 * 14 13 12
16 16 O 1.21284 * 120.00110 * 180.02562 * 15 14 13
17 17 C 1.50701 * 119.99942 * 0.02562 * 15 14 13
18 18 S 1.81407 * 109.47201 * 180.02562 * 17 15 14
19 19 C 1.81396 * 103.00024 * 180.02562 * 18 17 15
20 20 C 1.50700 * 109.46788 * 180.02562 * 19 18 17
21 21 C 1.38671 * 120.42242 * 90.00239 * 20 19 18
22 22 C 1.38633 * 118.42191 * 180.02562 * 21 20 19
23 23 C 1.38219 * 119.16007 * 359.97438 * 22 21 20
24 24 N 1.31863 * 120.76760 * 0.02562 * 23 22 21
25 25 C 1.31882 * 121.72013 * 359.69843 * 24 23 22
26 26 C 1.46919 * 118.73612 * 306.37786 * 14 13 12
27 27 H 0.96998 * 119.99864 * 359.97438 * 1 2 3
28 28 H 1.09002 * 109.46050 * 301.33758 * 11 9 7
29 29 H 1.09004 * 109.46034 * 61.30973 * 11 9 7
30 30 H 1.08998 * 109.49692 * 58.57850 * 12 11 9
31 31 H 1.09003 * 109.49441 * 178.67822 * 12 11 9
32 32 H 1.08998 * 109.59857 * 294.86728 * 13 12 11
33 33 H 1.09003 * 109.70130 * 174.50265 * 13 12 11
34 34 H 1.08997 * 109.47722 * 299.99929 * 17 15 14
35 35 H 1.09001 * 109.47111 * 60.00343 * 17 15 14
36 36 H 1.09006 * 109.47185 * 299.99802 * 19 18 17
37 37 H 1.09000 * 109.47266 * 60.00106 * 19 18 17
38 38 H 1.07999 * 120.78870 * 359.96959 * 21 20 19
39 39 H 1.08000 * 120.41872 * 180.02562 * 22 21 20
40 40 H 1.07999 * 119.62036 * 179.97438 * 23 22 21
41 41 H 1.08002 * 119.61608 * 180.31720 * 25 24 23
42 42 H 1.08997 * 109.59005 * 293.82473 * 26 14 13
43 43 H 1.09002 * 109.70256 * 173.46709 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2511 -2.4991 0.0005
10 1 0.6233 -2.5573 -0.8886
11 6 2.2451 -3.6628 0.0005
12 6 1.4808 -4.9883 -0.0327
13 6 0.6058 -5.1002 1.2197
14 7 -0.2528 -3.9109 1.3042
15 6 -1.5892 -4.0360 1.4258
16 8 -2.2872 -3.0465 1.4941
17 6 -2.2162 -5.4054 1.4769
18 16 -4.0153 -5.2409 1.6414
19 6 -4.5802 -6.9641 1.6861
20 6 -6.0807 -6.9974 1.8220
21 6 -6.8878 -7.0085 0.6944
22 6 -8.2629 -7.0388 0.8676
23 6 -8.7801 -7.0573 2.1492
24 7 -7.9821 -7.0460 3.1989
25 6 -6.6696 -7.0227 3.0719
26 6 0.3732 -2.5827 1.2532
27 1 -0.4850 0.8400 0.0004
28 1 2.8874 -3.5917 -0.8773
29 1 2.8561 -3.6184 0.9021
30 1 0.8505 -5.0227 -0.9214
31 1 2.1894 -5.8163 -0.0564
32 1 1.2397 -5.1569 2.1046
33 1 -0.0140 -5.9945 1.1563
34 1 -1.9836 -5.9461 0.5596
35 1 -1.8215 -5.9540 2.3321
36 1 -4.2880 -7.4663 0.7638
37 1 -4.1266 -7.4732 2.5365
38 1 -6.4554 -6.9930 -0.2951
39 1 -8.9217 -7.0486 0.0118
40 1 -9.8503 -7.0805 2.2927
41 1 -6.0479 -7.0193 3.9550
42 1 0.9880 -2.4341 2.1408
43 1 -0.3986 -1.8141 1.2104
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597911461.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:16:26
Heat of formation + Delta-G solvation = -26.647052 kcal
Electronic energy + Delta-G solvation = -23663.228086 eV
Core-core repulsion = 20219.335250 eV
Total energy + Delta-G solvation = -3443.892836 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.07089 -40.95533 -38.34949 -35.35458 -34.61898 -33.54674 -32.82730 -31.91221
-30.67092 -28.38200 -26.97363 -25.87842 -24.52402 -23.45472 -23.18238 -21.57933
-19.83819 -18.61595 -18.07534 -17.94620 -17.47984 -17.37129 -16.69354 -16.49393
-16.29497 -16.08147 -15.24323 -15.15868 -14.89728 -14.68507 -14.45075 -14.38554
-14.22700 -13.98101 -13.93817 -13.69159 -13.52154 -13.28270 -12.93109 -12.68832
-12.53266 -12.29532 -12.23239 -11.82339 -11.64330 -11.16045 -11.09089 -10.95593
-10.71453 -10.64627 -10.53200 -10.43416 -9.86181 -9.44062 -8.69339 -8.12671
-6.29811 -0.18716 0.31659 0.77633 1.37937 1.39729 1.51501 1.62221
1.66469 2.22407 2.41035 2.91521 3.15712 3.45639 3.56146 3.74842
3.82878 4.03853 4.04886 4.07988 4.08727 4.19467 4.24081 4.34401
4.42775 4.51993 4.60680 4.70876 4.74547 4.80736 4.86055 4.86925
5.10574 5.17599 5.25426 5.27415 5.28291 5.35493 5.53713 5.62654
5.75544 5.89108 5.99147 6.31640 6.61831 6.83847 7.00449 7.27859
7.40944 8.90584
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.021796 B = 0.002533 C = 0.002354
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.331098 B =11052.091300 C =11889.777252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.008 3.992
3 Si 0.957 3.043
4 H -0.259 1.259
5 H -0.283 1.283
6 H -0.284 1.284
7 C -0.534 4.534
8 H 0.062 0.938
9 C 0.038 3.962
10 H -0.015 1.015
11 C -0.107 4.107
12 C -0.127 4.127
13 C 0.101 3.899
14 N -0.606 5.606
15 C 0.507 3.493
16 O -0.581 6.581
17 C -0.102 4.102
18 S -0.252 6.252
19 C -0.042 4.042
20 C -0.131 4.131
21 C -0.067 4.067
22 C -0.171 4.171
23 C 0.087 3.913
24 N -0.515 5.515
25 C 0.102 3.898
26 C 0.126 3.874
27 H 0.259 0.741
28 H 0.051 0.949
29 H 0.057 0.943
30 H 0.052 0.948
31 H 0.106 0.894
32 H 0.082 0.918
33 H 0.116 0.884
34 H 0.137 0.863
35 H 0.143 0.857
36 H 0.114 0.886
37 H 0.115 0.885
38 H 0.153 0.847
39 H 0.164 0.836
40 H 0.178 0.822
41 H 0.164 0.836
42 H 0.036 0.964
43 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.710 -22.614 2.182 24.332
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.191 4.191
3 Si 0.782 3.218
4 H -0.183 1.183
5 H -0.209 1.209
6 H -0.210 1.210
7 C -0.573 4.573
8 H 0.081 0.919
9 C 0.019 3.981
10 H 0.004 0.996
11 C -0.144 4.144
12 C -0.165 4.165
13 C -0.020 4.020
14 N -0.338 5.338
15 C 0.295 3.705
16 O -0.461 6.461
17 C -0.253 4.253
18 S -0.023 6.023
19 C -0.189 4.189
20 C -0.134 4.134
21 C -0.095 4.095
22 C -0.190 4.190
23 C -0.070 4.070
24 N -0.224 5.224
25 C -0.057 4.057
26 C 0.003 3.997
27 H 0.068 0.932
28 H 0.069 0.931
29 H 0.076 0.924
30 H 0.071 0.929
31 H 0.125 0.875
32 H 0.101 0.899
33 H 0.134 0.866
34 H 0.155 0.845
35 H 0.161 0.839
36 H 0.132 0.868
37 H 0.134 0.866
38 H 0.170 0.830
39 H 0.182 0.818
40 H 0.195 0.805
41 H 0.181 0.819
42 H 0.055 0.945
43 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -10.101 -21.055 3.114 23.560
hybrid contribution 1.381 0.679 -1.003 1.837
sum -8.720 -20.376 2.111 22.264
Atomic orbital electron populations
1.70099 1.07442 1.27139 1.50741 1.25910 0.95539 1.02994 0.94686
0.85523 0.79349 0.79521 0.77395 1.18287 1.20901 1.20961 1.21563
0.93309 0.91541 1.50881 0.91938 1.18907 0.93114 0.93902 0.92174
0.99641 1.21528 0.97658 0.94345 1.00912 1.21920 0.99091 0.98008
0.97461 1.22095 0.93881 0.86891 0.99156 1.48459 1.05642 1.09011
1.70723 1.20531 0.82468 0.90996 0.76523 1.90743 1.62134 1.41559
1.51644 1.23488 0.95100 0.97285 1.09406 1.88335 1.04643 1.11836
1.97468 1.22332 0.93685 0.94885 1.08026 1.20337 0.95026 1.02994
0.95049 1.21879 0.94073 0.93996 0.99522 1.22485 0.95982 1.00833
0.99720 1.23303 1.01161 0.94252 0.88305 1.67732 1.05716 1.13181
1.35765 1.22922 0.91110 0.94496 0.97170 1.21684 0.97099 0.82936
0.97975 0.93233 0.93070 0.92444 0.92926 0.87546 0.89946 0.86555
0.84521 0.83869 0.86755 0.86628 0.82957 0.81797 0.80456 0.81873
0.94548 0.90848
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -56.50 11.40 21.45 0.24 -56.26 16
2 C 0.01 0.45 5.30 84.65 0.45 0.90 16
3 Si 0.96 44.70 29.54 68.60 2.03 46.73 16
4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16
5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16
7 C -0.53 -29.45 8.56 25.60 0.22 -29.23 16
8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16
9 C 0.04 1.91 2.25 -11.46 -0.03 1.89 16
10 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16
11 C -0.11 -3.96 5.11 30.62 0.16 -3.80 16
12 C -0.13 -3.38 6.08 30.67 0.19 -3.19 16
13 C 0.10 2.51 6.34 86.36 0.55 3.06 16
14 N -0.61 -23.06 2.97 -818.91 -2.43 -25.49 16
15 C 0.51 19.76 7.72 87.66 0.68 20.44 16
16 O -0.58 -30.04 15.28 -3.04 -0.05 -30.09 16
17 C -0.10 -2.47 4.77 71.24 0.34 -2.13 16
18 S -0.25 -6.91 20.86 -56.49 -1.18 -8.09 16
19 C -0.04 -0.64 6.10 71.24 0.43 -0.21 16
20 C -0.13 -2.35 5.16 -19.77 -0.10 -2.45 16
21 C -0.07 -1.07 9.86 22.47 0.22 -0.85 16
22 C -0.17 -2.42 10.11 22.36 0.23 -2.19 16
23 C 0.09 1.46 11.18 84.68 0.95 2.40 16
24 N -0.52 -11.28 10.36 -195.84 -2.03 -13.31 16
25 C 0.10 2.04 10.86 84.67 0.92 2.96 16
26 C 0.13 6.23 5.40 86.36 0.47 6.70 16
27 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16
30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
31 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16
32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
33 H 0.12 1.80 5.93 -2.39 -0.01 1.79 16
34 H 0.14 2.45 7.69 -2.39 -0.02 2.43 16
35 H 0.14 2.36 7.94 -2.39 -0.02 2.34 16
36 H 0.11 1.27 8.10 -2.39 -0.02 1.25 16
37 H 0.12 1.27 8.09 -2.39 -0.02 1.25 16
38 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16
39 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16
40 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16
41 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16
42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16
43 H 0.07 4.44 5.14 -2.39 -0.01 4.43 16
Total: -1.00 -81.76 364.70 3.24 -78.52
By element:
Atomic # 1 Polarization: 12.69 SS G_CDS: 1.00 Total: 13.69 kcal
Atomic # 6 Polarization: -11.37 SS G_CDS: 5.66 Total: -5.71 kcal
Atomic # 7 Polarization: -90.83 SS G_CDS: -4.22 Total: -95.05 kcal
Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.09 kcal
Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal
Atomic # 16 Polarization: -6.91 SS G_CDS: -1.18 Total: -8.09 kcal
Total: -81.76 3.24 -78.52 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597911461.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.875 kcal
(2) G-P(sol) polarization free energy of solvation -81.763 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.647 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds