Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47414 * 300.00105 * 3 2 1 6 6 H 1.48505 * 109.46724 * 60.00426 * 3 2 1 7 7 C 1.37879 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99956 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00143 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49674 * 299.94134 * 9 7 2 11 11 C 1.53041 * 109.52504 * 179.85648 * 9 7 2 12 12 C 1.53033 * 109.53898 * 178.66881 * 11 9 7 13 13 C 1.53192 * 109.31270 * 61.36218 * 12 11 9 14 14 N 1.46926 * 108.77820 * 305.36633 * 13 12 11 15 15 C 1.34773 * 120.62904 * 233.58715 * 14 13 12 16 16 O 1.21285 * 119.99916 * 180.02562 * 15 14 13 17 17 C 1.50691 * 120.00401 * 359.97438 * 15 14 13 18 18 S 1.81400 * 109.47260 * 180.02562 * 17 15 14 19 19 C 1.81404 * 103.00173 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47386 * 180.02562 * 19 18 17 21 21 C 1.38231 * 119.61509 * 269.72862 * 20 19 18 22 22 C 1.38622 * 119.15560 * 179.75521 * 21 20 19 23 23 C 1.38669 * 118.42627 * 0.50440 * 22 21 20 24 24 C 1.38182 * 119.16010 * 359.73299 * 23 22 21 25 25 N 1.31848 * 119.61916 * 89.99902 * 20 19 18 26 26 C 1.46927 * 118.73580 * 53.60911 * 14 13 12 27 27 H 0.96998 * 120.00335 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46121 * 298.68659 * 11 9 7 29 29 H 1.09004 * 109.46035 * 58.65646 * 11 9 7 30 30 H 1.09000 * 109.49457 * 301.41562 * 12 11 9 31 31 H 1.08995 * 109.50116 * 181.31732 * 12 11 9 32 32 H 1.09006 * 109.58809 * 185.57967 * 13 12 11 33 33 H 1.09002 * 109.58657 * 65.15954 * 13 12 11 34 34 H 1.09004 * 109.47604 * 300.00071 * 17 15 14 35 35 H 1.09003 * 109.47185 * 60.00195 * 17 15 14 36 36 H 1.09004 * 109.46909 * 300.00229 * 19 18 17 37 37 H 1.09000 * 109.47402 * 59.99440 * 19 18 17 38 38 H 1.07995 * 120.41712 * 359.97438 * 21 20 19 39 39 H 1.08005 * 120.78534 * 180.21819 * 22 21 20 40 40 H 1.07996 * 120.42394 * 179.71249 * 23 22 21 41 41 H 1.08001 * 119.62145 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.58859 * 66.17990 * 26 14 13 43 43 H 1.09001 * 109.58530 * 186.46228 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6253 -2.5580 0.8901 11 6 2.2444 -3.6633 -0.0048 12 6 1.4799 -4.9886 0.0287 13 6 0.6011 -5.0983 -1.2212 14 7 -0.2572 -3.9085 -1.3019 15 6 -1.5939 -4.0329 -1.4208 16 8 -2.2915 -3.0430 -1.4869 17 6 -2.2216 -5.4019 -1.4728 18 16 -4.0208 -5.2363 -1.6347 19 6 -4.5868 -6.9592 -1.6793 20 6 -6.0874 -6.9917 -1.8143 21 6 -6.8752 -7.0077 -0.6786 22 6 -8.2546 -7.0324 -0.8138 23 6 -8.7924 -7.0509 -2.0919 24 6 -7.9415 -7.0385 -3.1806 25 7 -6.6335 -7.0100 -3.0142 26 6 0.3696 -2.5806 -1.2509 27 1 -0.4850 0.8400 0.0004 28 1 2.8531 -3.6180 -0.9079 29 1 2.8890 -3.5938 0.8714 30 1 0.8521 -5.0240 0.9190 31 1 2.1882 -5.8168 0.0493 32 1 -0.0190 -5.9923 -1.1547 33 1 1.2324 -5.1543 -2.1081 34 1 -1.8290 -5.9494 -2.3297 35 1 -1.9872 -5.9441 -0.5568 36 1 -4.1346 -7.4682 -2.5305 37 1 -4.2935 -7.4620 -0.7577 38 1 -6.4219 -6.9975 0.3016 39 1 -8.8952 -7.0418 0.0557 40 1 -9.8626 -7.0750 -2.2346 41 1 -8.3523 -7.0531 -4.1793 42 1 0.9821 -2.4312 -2.1401 43 1 -0.4032 -1.8133 -1.2064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597915274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -3.384008 kcal Electronic energy + Delta-G solvation = -23664.936061 eV Core-core repulsion = 20222.051986 eV Total energy + Delta-G solvation = -3442.884075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38189 -39.40456 -36.70934 -33.46915 -33.30391 -32.55289 -31.85047 -30.36908 -29.21648 -27.93743 -25.06162 -24.29585 -23.77764 -22.45000 -21.85133 -19.94628 -18.32952 -17.24419 -16.83650 -16.60238 -16.26698 -16.08527 -15.68110 -15.21168 -15.02014 -14.58578 -14.24640 -13.78040 -13.73366 -13.62825 -13.47076 -13.13215 -12.80089 -12.74863 -12.52487 -12.50583 -12.00428 -11.86000 -11.80216 -11.02944 -10.94201 -10.50709 -10.43973 -10.25522 -10.17340 -9.96857 -9.91530 -9.69900 -9.35680 -9.15759 -9.13389 -8.90965 -8.44164 -7.80432 -7.53688 -5.99612 -4.08805 0.60770 1.00786 1.68442 2.54331 3.15462 3.30499 3.38950 3.41677 3.61691 3.71025 3.92547 4.37167 4.43008 4.57876 4.76714 4.83187 4.83935 5.05339 5.09113 5.11406 5.19115 5.30030 5.31869 5.40470 5.45399 5.48519 5.61808 5.82811 5.89641 5.93970 6.12180 6.27473 6.40064 6.56613 6.64054 6.82037 6.94841 7.11408 7.24788 7.62792 7.72901 7.85502 7.98309 8.19701 8.37759 8.79328 8.95745 9.57111 11.05610 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.002542 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.854986 B =11013.717648 C =11848.721950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.108 3.892 14 N -0.602 5.602 15 C 0.521 3.479 16 O -0.516 6.516 17 C -0.128 4.128 18 S -0.155 6.155 19 C -0.067 4.067 20 C 0.148 3.852 21 C -0.154 4.154 22 C -0.074 4.074 23 C -0.174 4.174 24 C 0.102 3.898 25 N -0.472 5.472 26 C 0.113 3.887 27 H 0.263 0.737 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.157 0.843 42 H 0.043 0.957 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -19.261 -2.510 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.016 4.016 14 N -0.336 5.336 15 C 0.306 3.694 16 O -0.392 6.392 17 C -0.279 4.279 18 S 0.072 5.928 19 C -0.215 4.215 20 C 0.009 3.991 21 C -0.176 4.176 22 C -0.100 4.100 23 C -0.195 4.195 24 C -0.056 4.056 25 N -0.182 5.182 26 C -0.007 4.007 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.175 0.825 42 H 0.061 0.939 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.196 -17.647 -3.344 21.711 hybrid contribution 0.734 -0.362 0.837 1.171 sum -11.462 -18.009 -2.507 21.494 Atomic orbital electron populations 1.69890 1.05725 1.26805 1.49209 1.25065 0.94884 0.99301 0.94824 0.86539 0.80013 0.83815 0.77661 1.19803 1.20944 1.21003 1.21100 0.92926 0.90066 1.51917 0.92294 1.18975 0.92600 0.92356 0.93999 0.95311 1.21627 0.98569 0.94017 1.00643 1.21949 0.98628 0.99226 0.97422 1.21671 0.93594 0.87588 0.98753 1.48445 1.04758 1.09168 1.71236 1.19461 0.82818 0.89032 0.78115 1.90766 1.60715 1.38660 1.49066 1.23657 0.96606 1.01396 1.06285 1.87887 1.02701 1.05013 1.97159 1.22326 0.93385 0.99883 1.05940 1.20324 0.94320 0.95570 0.88847 1.21981 0.94417 1.01158 1.00007 1.21597 0.94990 0.95548 0.97911 1.22177 1.01529 1.02118 0.93662 1.22763 0.88427 0.94970 0.99420 1.67434 1.13785 1.11384 1.25571 1.22336 0.98692 0.81024 0.98599 0.92642 0.93132 0.92953 0.92117 0.92157 0.91358 0.91811 0.87687 0.87636 0.88275 0.88536 0.84388 0.84590 0.84690 0.82549 0.93874 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 11.39 55.43 0.63 -25.17 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.08 8.57 -34.44 -0.29 -14.37 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.15 5.11 -26.69 -0.14 -2.29 16 12 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 13 C 0.11 1.59 6.34 -3.71 -0.02 1.57 16 14 N -0.60 -11.87 2.97 -172.77 -0.51 -12.39 16 15 C 0.52 10.44 7.72 -10.99 -0.08 10.35 16 16 O -0.52 -12.90 15.28 5.55 0.08 -12.82 16 17 C -0.13 -1.82 4.77 36.00 0.17 -1.65 16 18 S -0.15 -2.38 20.86 -107.50 -2.24 -4.62 16 19 C -0.07 -0.73 6.23 36.01 0.22 -0.50 16 20 C 0.15 1.71 6.04 -82.59 -0.50 1.21 16 21 C -0.15 -1.48 9.74 -39.44 -0.38 -1.86 16 22 C -0.07 -0.60 10.17 -39.28 -0.40 -1.00 16 23 C -0.17 -1.35 10.11 -39.44 -0.40 -1.75 16 24 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 25 N -0.47 -5.79 10.27 -9.47 -0.10 -5.88 16 26 C 0.11 2.74 5.40 -3.71 -0.02 2.72 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.77 5.93 -51.93 -0.31 0.47 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.22 7.94 -51.92 -0.41 0.81 16 35 H 0.11 1.24 7.69 -51.92 -0.40 0.84 16 36 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.10 0.81 8.08 -51.92 -0.42 0.39 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.12 3.52 5.12 -51.93 -0.27 3.25 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -34.01 364.83 -10.58 -44.60 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.42 Total: 1.10 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.50 Total: -6.64 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.02 Total: -43.44 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -2.24 Total: -4.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.01 -10.58 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.213 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds