Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47414 * 300.00105 * 3 2 1 6 6 H 1.48505 * 109.46724 * 60.00426 * 3 2 1 7 7 C 1.37879 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99956 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00143 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49674 * 299.94134 * 9 7 2 11 11 C 1.53041 * 109.52504 * 179.85648 * 9 7 2 12 12 C 1.53033 * 109.53898 * 178.66881 * 11 9 7 13 13 C 1.53192 * 109.31270 * 61.36218 * 12 11 9 14 14 N 1.46926 * 108.77820 * 305.36633 * 13 12 11 15 15 C 1.34773 * 120.62904 * 233.58715 * 14 13 12 16 16 O 1.21285 * 119.99916 * 180.02562 * 15 14 13 17 17 C 1.50691 * 120.00401 * 359.97438 * 15 14 13 18 18 S 1.81400 * 109.47260 * 180.02562 * 17 15 14 19 19 C 1.81404 * 103.00173 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47386 * 180.02562 * 19 18 17 21 21 C 1.38231 * 119.61509 * 269.72862 * 20 19 18 22 22 C 1.38622 * 119.15560 * 179.75521 * 21 20 19 23 23 C 1.38669 * 118.42627 * 0.50440 * 22 21 20 24 24 C 1.38182 * 119.16010 * 359.73299 * 23 22 21 25 25 N 1.31848 * 119.61916 * 89.99902 * 20 19 18 26 26 C 1.46927 * 118.73580 * 53.60911 * 14 13 12 27 27 H 0.96998 * 120.00335 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46121 * 298.68659 * 11 9 7 29 29 H 1.09004 * 109.46035 * 58.65646 * 11 9 7 30 30 H 1.09000 * 109.49457 * 301.41562 * 12 11 9 31 31 H 1.08995 * 109.50116 * 181.31732 * 12 11 9 32 32 H 1.09006 * 109.58809 * 185.57967 * 13 12 11 33 33 H 1.09002 * 109.58657 * 65.15954 * 13 12 11 34 34 H 1.09004 * 109.47604 * 300.00071 * 17 15 14 35 35 H 1.09003 * 109.47185 * 60.00195 * 17 15 14 36 36 H 1.09004 * 109.46909 * 300.00229 * 19 18 17 37 37 H 1.09000 * 109.47402 * 59.99440 * 19 18 17 38 38 H 1.07995 * 120.41712 * 359.97438 * 21 20 19 39 39 H 1.08005 * 120.78534 * 180.21819 * 22 21 20 40 40 H 1.07996 * 120.42394 * 179.71249 * 23 22 21 41 41 H 1.08001 * 119.62145 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.58859 * 66.17990 * 26 14 13 43 43 H 1.09001 * 109.58530 * 186.46228 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6253 -2.5580 0.8901 11 6 2.2444 -3.6633 -0.0048 12 6 1.4799 -4.9886 0.0287 13 6 0.6011 -5.0983 -1.2212 14 7 -0.2572 -3.9085 -1.3019 15 6 -1.5939 -4.0329 -1.4208 16 8 -2.2915 -3.0430 -1.4869 17 6 -2.2216 -5.4019 -1.4728 18 16 -4.0208 -5.2363 -1.6347 19 6 -4.5868 -6.9592 -1.6793 20 6 -6.0874 -6.9917 -1.8143 21 6 -6.8752 -7.0077 -0.6786 22 6 -8.2546 -7.0324 -0.8138 23 6 -8.7924 -7.0509 -2.0919 24 6 -7.9415 -7.0385 -3.1806 25 7 -6.6335 -7.0100 -3.0142 26 6 0.3696 -2.5806 -1.2509 27 1 -0.4850 0.8400 0.0004 28 1 2.8531 -3.6180 -0.9079 29 1 2.8890 -3.5938 0.8714 30 1 0.8521 -5.0240 0.9190 31 1 2.1882 -5.8168 0.0493 32 1 -0.0190 -5.9923 -1.1547 33 1 1.2324 -5.1543 -2.1081 34 1 -1.8290 -5.9494 -2.3297 35 1 -1.9872 -5.9441 -0.5568 36 1 -4.1346 -7.4682 -2.5305 37 1 -4.2935 -7.4620 -0.7577 38 1 -6.4219 -6.9975 0.3016 39 1 -8.8952 -7.0418 0.0557 40 1 -9.8626 -7.0750 -2.2346 41 1 -8.3523 -7.0531 -4.1793 42 1 0.9821 -2.4312 -2.1401 43 1 -0.4032 -1.8133 -1.2064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597915274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -24.651619 kcal Electronic energy + Delta-G solvation = -23665.858294 eV Core-core repulsion = 20222.051986 eV Total energy + Delta-G solvation = -3443.806307 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07987 -40.95971 -38.35116 -35.35238 -34.00881 -33.54524 -33.24130 -31.91536 -30.68361 -28.70846 -26.97321 -25.88370 -24.44288 -23.45163 -23.16989 -21.58454 -19.84919 -18.62587 -17.98522 -17.94164 -17.42672 -17.13743 -16.69282 -16.50775 -16.39239 -16.26884 -15.31863 -15.20983 -14.92129 -14.70114 -14.46316 -14.35643 -14.23122 -14.07576 -13.71406 -13.58812 -13.46346 -13.25209 -12.92626 -12.68261 -12.57481 -12.29113 -12.22832 -11.81867 -11.63975 -11.15225 -11.05151 -10.95426 -10.79884 -10.68745 -10.52946 -10.41562 -9.87710 -9.44341 -8.69632 -8.12076 -6.29324 -0.18777 0.34115 0.74885 1.38265 1.39949 1.51868 1.57318 1.65445 2.21395 2.41371 2.93252 3.16113 3.23035 3.54053 3.71724 4.01453 4.03400 4.07310 4.15286 4.19440 4.22352 4.23292 4.34655 4.39650 4.43635 4.60751 4.74102 4.74895 4.80951 4.84509 4.86995 5.10946 5.20177 5.25815 5.27190 5.28683 5.35880 5.54035 5.62848 5.77618 5.89305 5.99350 6.31970 6.60970 6.84284 7.02657 7.26847 7.41321 8.91179 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.002542 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.854986 B =11013.717648 C =11848.721950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.014 1.014 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.101 3.899 14 N -0.606 5.606 15 C 0.509 3.491 16 O -0.580 6.580 17 C -0.102 4.102 18 S -0.240 6.240 19 C -0.040 4.040 20 C 0.118 3.882 21 C -0.162 4.162 22 C -0.079 4.079 23 C -0.167 4.167 24 C 0.083 3.917 25 N -0.506 5.506 26 C 0.126 3.874 27 H 0.259 0.741 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.036 0.964 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 -22.461 -2.376 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.004 0.996 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.021 4.021 14 N -0.338 5.338 15 C 0.296 3.704 16 O -0.460 6.460 17 C -0.253 4.253 18 S -0.013 6.013 19 C -0.188 4.188 20 C -0.020 4.020 21 C -0.183 4.183 22 C -0.105 4.105 23 C -0.187 4.187 24 C -0.074 4.074 25 N -0.216 5.216 26 C 0.003 3.997 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.054 0.946 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.756 -20.900 -3.205 24.193 hybrid contribution 0.519 0.592 0.793 1.118 sum -11.237 -20.308 -2.412 23.334 Atomic orbital electron populations 1.70099 1.07454 1.27145 1.50725 1.25917 0.95541 1.03015 0.94684 0.85516 0.79342 0.79492 0.77392 1.18278 1.20981 1.20868 1.21563 0.93312 0.91522 1.50895 0.91915 1.18907 0.93102 0.93924 0.92151 0.99578 1.21524 0.97653 0.94312 1.00932 1.21919 0.99060 0.98044 0.97430 1.22104 0.93877 0.86869 0.99250 1.48459 1.05525 1.09078 1.70728 1.20465 0.82523 0.90848 0.76544 1.90739 1.62184 1.41453 1.51649 1.23488 0.94854 0.97518 1.09428 1.88239 1.04780 1.10772 1.97467 1.22299 0.93170 0.95703 1.07623 1.20521 0.94784 0.97272 0.89395 1.22242 0.95279 1.00730 1.00090 1.22029 0.94816 0.94502 0.99169 1.22556 1.02977 1.00132 0.93059 1.23227 0.88023 0.95061 1.01120 1.67387 1.15336 1.12549 1.26374 1.21703 0.97103 0.82863 0.98012 0.93229 0.92464 0.92992 0.92850 0.87524 0.86646 0.89960 0.84164 0.84208 0.87631 0.85737 0.83058 0.81750 0.81568 0.80695 0.94570 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.85 11.39 21.45 0.24 -56.61 16 2 C 0.01 0.44 5.30 84.66 0.45 0.89 16 3 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.53 -29.65 8.57 25.60 0.22 -29.43 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.04 1.94 2.25 -11.46 -0.03 1.91 16 10 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 11 C -0.11 -4.00 5.11 30.62 0.16 -3.85 16 12 C -0.13 -3.45 6.08 30.67 0.19 -3.27 16 13 C 0.10 2.60 6.34 86.36 0.55 3.15 16 14 N -0.61 -23.69 2.97 -818.91 -2.43 -26.13 16 15 C 0.51 20.55 7.72 87.65 0.68 21.23 16 16 O -0.58 -30.75 15.28 -3.05 -0.05 -30.80 16 17 C -0.10 -2.69 4.77 71.23 0.34 -2.35 16 18 S -0.24 -7.32 20.86 -56.49 -1.18 -8.50 16 19 C -0.04 -0.80 6.23 71.24 0.44 -0.36 16 20 C 0.12 2.60 6.04 42.56 0.26 2.86 16 21 C -0.16 -2.86 9.74 22.36 0.22 -2.64 16 22 C -0.08 -1.10 10.17 22.46 0.23 -0.87 16 23 C -0.17 -2.22 10.11 22.36 0.23 -1.99 16 24 C 0.08 1.48 11.18 84.67 0.95 2.42 16 25 N -0.51 -12.13 10.27 -183.88 -1.89 -14.02 16 26 C 0.13 6.33 5.40 86.36 0.47 6.80 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.12 1.94 5.93 -2.38 -0.01 1.93 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.14 2.71 7.94 -2.39 -0.02 2.69 16 35 H 0.14 2.72 7.69 -2.39 -0.02 2.70 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.12 1.72 8.08 -2.39 -0.02 1.70 16 38 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 40 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 4.51 5.12 -2.39 -0.01 4.50 16 Total: -1.00 -83.03 364.83 3.05 -79.98 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 1.00 Total: 14.59 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.34 Total: -5.50 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -4.08 Total: -96.75 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -1.18 Total: -8.50 kcal Total: -83.03 3.05 -79.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.325 kcal (2) G-P(sol) polarization free energy of solvation -83.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds