Wall clock time and date at job start Tue Mar 31 2020 12:12:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31637 * 1
3 3 Si 1.86796 * 119.99922 * 2 1
4 4 H 1.48497 * 109.47493 * 270.00026 * 3 2 1
5 5 H 1.48503 * 109.47028 * 30.00090 * 3 2 1
6 6 H 1.48497 * 109.47304 * 149.99977 * 3 2 1
7 7 C 1.38792 * 119.99786 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00597 * 0.02562 * 7 2 1
9 9 S 1.76204 * 119.99671 * 179.97438 * 7 2 1
10 10 C 1.81005 * 99.99789 * 180.02562 * 9 7 2
11 11 C 1.50698 * 109.47108 * 180.02562 * 10 9 7
12 12 O 1.21290 * 119.99990 * 0.02562 * 11 10 9
13 13 N 1.34779 * 120.00302 * 179.97438 * 11 10 9
14 14 C 1.39920 * 120.00129 * 185.27592 * 13 11 10
15 15 C 1.38952 * 120.03127 * 213.31270 * 14 13 11
16 16 C 1.38141 * 120.07491 * 180.02562 * 15 14 13
17 17 C 1.38173 * 120.14500 * 359.79044 * 16 15 14
18 18 C 1.38935 * 120.06607 * 0.46456 * 17 16 15
19 19 N 1.39674 * 120.04318 * 179.78820 * 18 17 16
20 20 C 1.46506 * 119.99528 * 359.72602 * 19 18 17
21 21 C 1.54271 * 110.03105 * 272.16172 * 20 19 18
22 22 C 1.54886 * 104.19717 * 217.10470 * 21 20 19
23 23 C 1.54899 * 102.74599 * 37.94590 * 22 21 20
24 24 C 1.53874 * 110.03087 * 155.00067 * 20 19 18
25 25 C 1.38720 * 120.03343 * 33.33506 * 14 13 11
26 26 H 0.96999 * 119.99489 * 359.97438 * 1 2 3
27 27 H 1.08998 * 109.47140 * 60.00609 * 10 9 7
28 28 H 1.08999 * 109.46984 * 300.00236 * 10 9 7
29 29 H 0.97003 * 119.99505 * 5.28462 * 13 11 10
30 30 H 1.07999 * 119.96403 * 0.02562 * 15 14 13
31 31 H 1.08007 * 119.92582 * 180.02562 * 16 15 14
32 32 H 1.08008 * 119.96588 * 180.22909 * 17 16 15
33 33 H 0.96993 * 120.00656 * 179.97438 * 19 18 17
34 34 H 1.08994 * 110.01815 * 33.60735 * 20 19 18
35 35 H 1.08998 * 110.48775 * 335.79010 * 21 20 19
36 36 H 1.09003 * 110.48031 * 98.42496 * 21 20 19
37 37 H 1.08996 * 110.76145 * 279.63084 * 22 21 20
38 38 H 1.09001 * 110.75337 * 156.25561 * 22 21 20
39 39 H 1.09000 * 110.48112 * 203.37545 * 23 22 21
40 40 H 1.09001 * 110.59803 * 80.78869 * 23 22 21
41 41 H 1.09003 * 110.02975 * 238.56769 * 24 20 19
42 42 H 1.09002 * 110.03489 * 359.94656 * 24 20 19
43 43 H 1.07996 * 120.06877 * 0.02562 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3164 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4979 2.0465 -1.4000
5 1 1.4477 2.6526 0.7001
6 1 3.5479 1.4402 0.7000
7 6 2.0103 -1.2020 0.0005
8 1 1.4703 -2.1374 0.0005
9 16 3.7723 -1.2020 -0.0001
10 6 4.0866 -2.9845 0.0001
11 6 5.5730 -3.2325 0.0002
12 8 6.3441 -2.2962 0.0006
13 7 6.0457 -4.4947 0.0010
14 6 7.4211 -4.7267 0.1125
15 6 7.9981 -5.8119 -0.5356
16 6 9.3557 -6.0421 -0.4257
17 6 10.1451 -5.1921 0.3251
18 6 9.5735 -4.1082 0.9799
19 7 10.3712 -3.2518 1.7423
20 6 11.8106 -3.4998 1.8567
21 6 12.0901 -4.4555 3.0350
22 6 13.4102 -3.9263 3.6485
23 6 13.2503 -2.3901 3.5299
24 6 12.5482 -2.1866 2.1715
25 6 8.2098 -3.8737 0.8706
26 1 -0.4849 0.8401 0.0004
27 1 3.6434 -3.4317 -0.8896
28 1 3.6440 -3.4313 0.8904
29 1 5.4324 -5.2423 -0.0759
30 1 7.3845 -6.4763 -1.1259
31 1 9.8018 -6.8861 -0.9308
32 1 11.2069 -5.3727 0.4060
33 1 9.9717 -2.4951 2.1990
34 1 12.1902 -3.9283 0.9292
35 1 11.2830 -4.4064 3.7659
36 1 12.2188 -5.4765 2.6756
37 1 14.2692 -4.2708 3.0728
38 1 13.4982 -4.2260 4.6927
39 1 14.2259 -1.9039 3.5318
40 1 12.6316 -2.0052 4.3406
41 1 13.2865 -1.9782 1.3971
42 1 11.8354 -1.3646 2.2382
43 1 7.7635 -3.0300 1.3758
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601678964.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:12:08
Heat of formation + Delta-G solvation = -17.795362 kcal
Electronic energy + Delta-G solvation = -23383.825265 eV
Core-core repulsion = 19940.316268 eV
Total energy + Delta-G solvation = -3443.508998 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.38882 -39.25432 -37.91544 -35.15256 -33.69134 -32.46561 -30.69944 -29.79291
-29.09777 -28.13105 -26.89148 -25.64275 -23.12294 -21.95060 -21.01984 -20.77956
-19.84613 -18.32538 -17.70067 -16.65970 -16.31165 -16.14759 -15.98319 -15.30574
-15.09174 -14.92998 -14.57538 -14.01933 -13.89612 -13.70321 -13.55442 -13.37211
-13.32195 -12.82734 -12.44155 -12.15233 -11.83877 -11.67314 -11.51137 -11.48580
-11.40249 -11.29849 -11.04067 -11.01076 -11.00361 -10.67389 -10.48222 -9.88859
-9.77642 -9.55317 -9.03053 -8.55209 -8.12846 -7.41113 -6.95945 -6.31515
-4.03967 1.42136 1.63117 2.68563 2.87559 3.19182 3.30883 3.37233
3.47713 3.61766 3.95002 4.18592 4.29157 4.30308 4.52138 4.66159
4.90389 4.99392 5.07337 5.07481 5.12156 5.18253 5.21344 5.25446
5.28324 5.30979 5.43967 5.53147 5.56518 5.63370 5.68735 5.69581
5.75930 5.85750 5.91103 5.95417 5.97571 6.29514 6.39132 6.48927
6.55363 6.97048 7.37223 7.49942 7.65967 7.91542 8.34489 8.39224
9.14382 10.77667
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.016999 B = 0.002595 C = 0.002308
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1646.767905 B =10788.243364 C =12128.132217
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.879 5.879
2 C 0.096 3.904
3 Si 0.857 3.143
4 H -0.267 1.267
5 H -0.274 1.274
6 H -0.236 1.236
7 C -0.522 4.522
8 H 0.089 0.911
9 S -0.139 6.139
10 C -0.125 4.125
11 C 0.530 3.470
12 O -0.497 6.497
13 N -0.679 5.679
14 C 0.202 3.798
15 C -0.208 4.208
16 C -0.056 4.056
17 C -0.220 4.220
18 C 0.234 3.766
19 N -0.741 5.741
20 C 0.149 3.851
21 C -0.140 4.140
22 C -0.125 4.125
23 C -0.124 4.124
24 C -0.133 4.133
25 C -0.198 4.198
26 H 0.271 0.729
27 H 0.100 0.900
28 H 0.101 0.899
29 H 0.411 0.589
30 H 0.120 0.880
31 H 0.121 0.879
32 H 0.117 0.883
33 H 0.400 0.600
34 H 0.082 0.918
35 H 0.072 0.928
36 H 0.067 0.933
37 H 0.067 0.933
38 H 0.066 0.934
39 H 0.066 0.934
40 H 0.066 0.934
41 H 0.073 0.927
42 H 0.072 0.928
43 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.541 -12.510 4.563 28.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.516 5.516
2 C -0.113 4.113
3 Si 0.682 3.318
4 H -0.192 1.192
5 H -0.199 1.199
6 H -0.160 1.160
7 C -0.669 4.669
8 H 0.107 0.893
9 S 0.087 5.913
10 C -0.275 4.275
11 C 0.317 3.683
12 O -0.369 6.369
13 N -0.325 5.325
14 C 0.106 3.894
15 C -0.230 4.230
16 C -0.075 4.075
17 C -0.243 4.243
18 C 0.131 3.869
19 N -0.370 5.370
20 C 0.043 3.957
21 C -0.179 4.179
22 C -0.163 4.163
23 C -0.162 4.162
24 C -0.171 4.171
25 C -0.223 4.223
26 H 0.081 0.919
27 H 0.118 0.882
28 H 0.120 0.880
29 H 0.246 0.754
30 H 0.138 0.862
31 H 0.139 0.861
32 H 0.135 0.865
33 H 0.235 0.765
34 H 0.100 0.900
35 H 0.091 0.909
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.085 0.915
39 H 0.085 0.915
40 H 0.085 0.915
41 H 0.091 0.909
42 H 0.091 0.909
43 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 26.757 -10.841 4.562 29.228
hybrid contribution -1.379 -0.411 0.036 1.439
sum 25.378 -11.252 4.598 28.139
Atomic orbital electron populations
1.69941 1.05894 1.27793 1.47937 1.24713 0.94466 0.98969 0.93169
0.86734 0.81849 0.83295 0.79953 1.19185 1.19908 1.15966 1.22304
0.88135 0.97592 1.58916 0.89292 1.84794 1.09476 0.99581 1.97450
1.23295 0.93251 1.04830 1.06169 1.20472 0.90919 0.81965 0.74960
1.90715 1.58526 1.41950 1.45726 1.43653 1.05910 1.09077 1.73896
1.17438 0.83086 0.94904 0.93941 1.20618 0.95562 1.01245 1.05623
1.20593 0.92759 0.97756 0.96412 1.20546 0.99676 0.98187 1.05890
1.17575 0.89711 0.89637 0.90018 1.44868 1.06057 1.31119 1.54999
1.21559 0.80648 0.95201 0.98320 1.22919 0.97727 0.99175 0.98072
1.22477 0.97536 0.95378 1.00874 1.22353 1.00435 0.96365 0.97060
1.22433 0.99656 0.97186 0.97846 1.20536 0.92098 1.04065 1.05577
0.91904 0.88169 0.88041 0.75351 0.86246 0.86130 0.86462 0.76485
0.90036 0.90914 0.91425 0.91394 0.91478 0.91526 0.91487 0.90873
0.90905 0.84829
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16
2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16
3 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16
4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16
5 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16
6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16
7 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16
8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16
9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16
10 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16
11 C 0.53 9.41 7.59 -10.99 -0.08 9.33 16
12 O -0.50 -10.53 13.55 5.55 0.08 -10.45 16
13 N -0.68 -9.32 5.34 -9.88 -0.05 -9.38 16
14 C 0.20 2.83 6.28 -83.72 -0.53 2.30 16
15 C -0.21 -2.43 9.96 -39.35 -0.39 -2.82 16
16 C -0.06 -0.59 10.03 -39.64 -0.40 -0.99 16
17 C -0.22 -2.43 9.21 -39.35 -0.36 -2.79 16
18 C 0.23 2.93 6.65 -83.82 -0.56 2.37 16
19 N -0.74 -7.70 5.21 -51.10 -0.27 -7.97 16
20 C 0.15 1.20 2.95 -66.81 -0.20 1.01 16
21 C -0.14 -1.02 6.53 -25.07 -0.16 -1.19 16
22 C -0.12 -0.74 6.91 -24.73 -0.17 -0.91 16
23 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16
24 C -0.13 -0.94 6.57 -25.62 -0.17 -1.10 16
25 C -0.20 -2.92 8.50 -39.19 -0.33 -3.26 16
26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
27 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16
28 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16
29 H 0.41 4.21 8.82 -40.82 -0.36 3.85 16
30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16
31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16
32 H 0.12 1.08 6.21 -52.48 -0.33 0.75 16
33 H 0.40 4.11 8.34 -40.82 -0.34 3.77 16
34 H 0.08 0.66 6.42 -51.93 -0.33 0.33 16
35 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16
36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16
40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
42 H 0.07 0.55 7.62 -51.93 -0.40 0.16 16
43 H 0.13 2.24 6.41 -52.49 -0.34 1.90 16
LS Contribution 364.46 15.07 5.49 5.49
Total: -1.00 -33.24 364.46 -10.09 -43.33
By element:
Atomic # 1 Polarization: 12.48 SS G_CDS: -6.32 Total: 6.16 kcal
Atomic # 6 Polarization: -9.95 SS G_CDS: -3.09 Total: -13.03 kcal
Atomic # 7 Polarization: -43.42 SS G_CDS: 0.46 Total: -42.96 kcal
Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal
Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -33.24 -10.09 -43.33 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601678964.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.531 kcal
(2) G-P(sol) polarization free energy of solvation -33.241 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds