Wall clock time and date at job start Tue Mar 31 2020 12:12:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31637 * 1
3 3 Si 1.86796 * 119.99922 * 2 1
4 4 H 1.48497 * 109.47493 * 270.00026 * 3 2 1
5 5 H 1.48503 * 109.47028 * 30.00090 * 3 2 1
6 6 H 1.48497 * 109.47304 * 149.99977 * 3 2 1
7 7 C 1.38792 * 119.99786 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00597 * 0.02562 * 7 2 1
9 9 S 1.76204 * 119.99671 * 179.97438 * 7 2 1
10 10 C 1.81005 * 99.99789 * 180.02562 * 9 7 2
11 11 C 1.50698 * 109.47108 * 180.02562 * 10 9 7
12 12 O 1.21290 * 119.99990 * 0.02562 * 11 10 9
13 13 N 1.34779 * 120.00302 * 179.97438 * 11 10 9
14 14 C 1.39920 * 120.00129 * 185.27592 * 13 11 10
15 15 C 1.38952 * 120.03127 * 213.31270 * 14 13 11
16 16 C 1.38141 * 120.07491 * 180.02562 * 15 14 13
17 17 C 1.38173 * 120.14500 * 359.79044 * 16 15 14
18 18 C 1.38935 * 120.06607 * 0.46456 * 17 16 15
19 19 N 1.39674 * 120.04318 * 179.78820 * 18 17 16
20 20 C 1.46506 * 119.99528 * 359.72602 * 19 18 17
21 21 C 1.54271 * 110.03105 * 272.16172 * 20 19 18
22 22 C 1.54886 * 104.19717 * 217.10470 * 21 20 19
23 23 C 1.54899 * 102.74599 * 37.94590 * 22 21 20
24 24 C 1.53874 * 110.03087 * 155.00067 * 20 19 18
25 25 C 1.38720 * 120.03343 * 33.33506 * 14 13 11
26 26 H 0.96999 * 119.99489 * 359.97438 * 1 2 3
27 27 H 1.08998 * 109.47140 * 60.00609 * 10 9 7
28 28 H 1.08999 * 109.46984 * 300.00236 * 10 9 7
29 29 H 0.97003 * 119.99505 * 5.28462 * 13 11 10
30 30 H 1.07999 * 119.96403 * 0.02562 * 15 14 13
31 31 H 1.08007 * 119.92582 * 180.02562 * 16 15 14
32 32 H 1.08008 * 119.96588 * 180.22909 * 17 16 15
33 33 H 0.96993 * 120.00656 * 179.97438 * 19 18 17
34 34 H 1.08994 * 110.01815 * 33.60735 * 20 19 18
35 35 H 1.08998 * 110.48775 * 335.79010 * 21 20 19
36 36 H 1.09003 * 110.48031 * 98.42496 * 21 20 19
37 37 H 1.08996 * 110.76145 * 279.63084 * 22 21 20
38 38 H 1.09001 * 110.75337 * 156.25561 * 22 21 20
39 39 H 1.09000 * 110.48112 * 203.37545 * 23 22 21
40 40 H 1.09001 * 110.59803 * 80.78869 * 23 22 21
41 41 H 1.09003 * 110.02975 * 238.56769 * 24 20 19
42 42 H 1.09002 * 110.03489 * 359.94656 * 24 20 19
43 43 H 1.07996 * 120.06877 * 0.02562 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3164 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4979 2.0465 -1.4000
5 1 1.4477 2.6526 0.7001
6 1 3.5479 1.4402 0.7000
7 6 2.0103 -1.2020 0.0005
8 1 1.4703 -2.1374 0.0005
9 16 3.7723 -1.2020 -0.0001
10 6 4.0866 -2.9845 0.0001
11 6 5.5730 -3.2325 0.0002
12 8 6.3441 -2.2962 0.0006
13 7 6.0457 -4.4947 0.0010
14 6 7.4211 -4.7267 0.1125
15 6 7.9981 -5.8119 -0.5356
16 6 9.3557 -6.0421 -0.4257
17 6 10.1451 -5.1921 0.3251
18 6 9.5735 -4.1082 0.9799
19 7 10.3712 -3.2518 1.7423
20 6 11.8106 -3.4998 1.8567
21 6 12.0901 -4.4555 3.0350
22 6 13.4102 -3.9263 3.6485
23 6 13.2503 -2.3901 3.5299
24 6 12.5482 -2.1866 2.1715
25 6 8.2098 -3.8737 0.8706
26 1 -0.4849 0.8401 0.0004
27 1 3.6434 -3.4317 -0.8896
28 1 3.6440 -3.4313 0.8904
29 1 5.4324 -5.2423 -0.0759
30 1 7.3845 -6.4763 -1.1259
31 1 9.8018 -6.8861 -0.9308
32 1 11.2069 -5.3727 0.4060
33 1 9.9717 -2.4951 2.1990
34 1 12.1902 -3.9283 0.9292
35 1 11.2830 -4.4064 3.7659
36 1 12.2188 -5.4765 2.6756
37 1 14.2692 -4.2708 3.0728
38 1 13.4982 -4.2260 4.6927
39 1 14.2259 -1.9039 3.5318
40 1 12.6316 -2.0052 4.3406
41 1 13.2865 -1.9782 1.3971
42 1 11.8354 -1.3646 2.2382
43 1 7.7635 -3.0300 1.3758
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601678964.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:12:07
Heat of formation + Delta-G solvation = -38.427157 kcal
Electronic energy + Delta-G solvation = -23384.719927 eV
Core-core repulsion = 19940.316268 eV
Total energy + Delta-G solvation = -3444.403660 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.53484 -40.16686 -38.79177 -36.20291 -34.69763 -34.62571 -31.92283 -30.73429
-29.72773 -29.21837 -27.86452 -27.59314 -24.15785 -22.86214 -21.87165 -21.53374
-20.72798 -19.97569 -19.01590 -18.01010 -17.28487 -17.10306 -17.04405 -16.81906
-16.50470 -16.06350 -15.58895 -15.36357 -15.05497 -14.87764 -14.69676 -14.39025
-14.28391 -14.23369 -13.70884 -13.37347 -13.07784 -13.01287 -12.71428 -12.55440
-12.48833 -12.33757 -12.03204 -11.92194 -11.89645 -11.74160 -11.52219 -11.41661
-11.18811 -10.95908 -10.66255 -10.57093 -9.20385 -9.01126 -8.53112 -8.27737
-6.24299 0.39762 0.71586 0.94373 1.29886 1.43971 1.51850 1.54587
2.10772 2.23306 2.52492 2.69050 2.85075 3.01274 3.61510 3.73328
3.73797 3.95091 4.12144 4.18104 4.29261 4.41387 4.42730 4.46793
4.52115 4.54623 4.60679 4.68839 4.72051 4.78882 4.82573 4.94768
5.04957 5.20519 5.25084 5.28983 5.37937 5.44950 5.45457 5.49572
5.67211 5.69448 6.01284 6.10416 6.37695 6.53250 6.77563 6.91912
7.06888 8.59236
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.016999 B = 0.002595 C = 0.002308
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1646.767905 B =10788.243364 C =12128.132217
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C 0.045 3.955
3 Si 0.914 3.086
4 H -0.263 1.263
5 H -0.259 1.259
6 H -0.237 1.237
7 C -0.529 4.529
8 H 0.064 0.936
9 S -0.172 6.172
10 C -0.110 4.110
11 C 0.535 3.465
12 O -0.537 6.537
13 N -0.658 5.658
14 C 0.178 3.822
15 C -0.207 4.207
16 C -0.051 4.051
17 C -0.219 4.219
18 C 0.227 3.773
19 N -0.742 5.742
20 C 0.146 3.854
21 C -0.137 4.137
22 C -0.120 4.120
23 C -0.123 4.123
24 C -0.133 4.133
25 C -0.226 4.226
26 H 0.277 0.723
27 H 0.119 0.881
28 H 0.118 0.882
29 H 0.428 0.572
30 H 0.144 0.856
31 H 0.156 0.844
32 H 0.139 0.861
33 H 0.396 0.604
34 H 0.086 0.914
35 H 0.057 0.943
36 H 0.073 0.927
37 H 0.079 0.921
38 H 0.071 0.929
39 H 0.078 0.922
40 H 0.060 0.940
41 H 0.082 0.918
42 H 0.062 0.938
43 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.121 -14.088 4.147 31.724
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.160 4.160
3 Si 0.736 3.264
4 H -0.187 1.187
5 H -0.183 1.183
6 H -0.161 1.161
7 C -0.676 4.676
8 H 0.082 0.918
9 S 0.054 5.946
10 C -0.261 4.261
11 C 0.321 3.679
12 O -0.413 6.413
13 N -0.305 5.305
14 C 0.083 3.917
15 C -0.229 4.229
16 C -0.070 4.070
17 C -0.242 4.242
18 C 0.122 3.878
19 N -0.370 5.370
20 C 0.041 3.959
21 C -0.176 4.176
22 C -0.158 4.158
23 C -0.161 4.161
24 C -0.171 4.171
25 C -0.251 4.251
26 H 0.087 0.913
27 H 0.137 0.863
28 H 0.136 0.864
29 H 0.267 0.733
30 H 0.161 0.839
31 H 0.173 0.827
32 H 0.157 0.843
33 H 0.231 0.769
34 H 0.104 0.896
35 H 0.075 0.925
36 H 0.092 0.908
37 H 0.098 0.902
38 H 0.090 0.910
39 H 0.096 0.904
40 H 0.079 0.921
41 H 0.100 0.900
42 H 0.081 0.919
43 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 29.349 -12.469 4.156 32.157
hybrid contribution -2.083 -0.098 0.179 2.093
sum 27.266 -12.566 4.335 30.333
Atomic orbital electron populations
1.70017 1.07255 1.29028 1.49068 1.25556 0.95286 1.02234 0.92931
0.85874 0.80654 0.79685 0.80201 1.18721 1.18308 1.16126 1.22451
0.90120 0.96772 1.58281 0.91757 1.84722 1.06596 1.05644 1.97608
1.23258 0.94771 1.00125 1.07958 1.20170 0.89901 0.82898 0.74881
1.90709 1.59069 1.43480 1.48036 1.43329 1.06624 1.08110 1.72429
1.17676 0.82705 0.96086 0.95214 1.20901 0.96442 1.00467 1.05092
1.21038 0.92251 0.98203 0.95471 1.20867 1.00887 0.97344 1.05056
1.17735 0.89175 0.90463 0.90419 1.45042 1.06941 1.30646 1.54410
1.21737 0.79275 0.96042 0.98876 1.22866 0.97997 0.99318 0.97383
1.22471 0.97072 0.94941 1.01273 1.22351 1.00762 0.96753 0.96191
1.22438 0.99567 0.96292 0.98766 1.20470 0.93476 1.04013 1.07123
0.91343 0.86262 0.86366 0.73278 0.83870 0.82659 0.84332 0.76932
0.89577 0.92464 0.90845 0.90186 0.91007 0.90376 0.92100 0.89981
0.91943 0.87852
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.72 13.97 21.65 0.30 -55.41 16
2 C 0.05 2.67 5.50 84.85 0.47 3.13 16
3 Si 0.91 45.04 27.74 68.60 1.90 46.94 16
4 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16
5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16
6 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16
7 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16
8 H 0.06 3.92 8.03 -2.91 -0.02 3.89 16
9 S -0.17 -8.67 18.55 -56.49 -1.05 -9.71 16
10 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16
11 C 0.53 18.87 7.59 87.66 0.66 19.54 16
12 O -0.54 -23.24 13.55 -3.06 -0.04 -23.28 16
13 N -0.66 -17.36 5.34 -303.56 -1.62 -18.99 16
14 C 0.18 4.81 6.28 38.14 0.24 5.05 16
15 C -0.21 -4.27 9.96 22.42 0.22 -4.05 16
16 C -0.05 -0.90 10.03 22.23 0.22 -0.67 16
17 C -0.22 -4.30 9.21 22.42 0.21 -4.09 16
18 C 0.23 5.55 6.65 38.19 0.25 5.80 16
19 N -0.74 -15.39 5.21 -315.59 -1.64 -17.04 16
20 C 0.15 2.18 2.95 45.72 0.13 2.31 16
21 C -0.14 -1.80 6.53 31.67 0.21 -1.59 16
22 C -0.12 -1.19 6.91 31.89 0.22 -0.97 16
23 C -0.12 -1.33 6.83 31.67 0.22 -1.11 16
24 C -0.13 -1.73 6.57 31.32 0.21 -1.52 16
25 C -0.23 -6.77 8.50 22.52 0.19 -6.58 16
26 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16
27 H 0.12 4.02 8.14 -2.40 -0.02 4.00 16
28 H 0.12 4.03 8.14 -2.40 -0.02 4.01 16
29 H 0.43 7.92 8.82 -92.71 -0.82 7.11 16
30 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16
31 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16
32 H 0.14 2.09 6.21 -2.91 -0.02 2.07 16
33 H 0.40 8.58 8.34 -92.71 -0.77 7.81 16
34 H 0.09 1.21 6.42 -2.39 -0.02 1.20 16
35 H 0.06 0.94 8.05 -2.39 -0.02 0.92 16
36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16
38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
41 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16
42 H 0.06 0.95 7.62 -2.39 -0.02 0.93 16
43 H 0.10 3.69 6.41 -2.91 -0.02 3.67 16
Total: -1.00 -73.25 364.46 1.83 -71.42
By element:
Atomic # 1 Polarization: 25.06 SS G_CDS: -0.59 Total: 24.47 kcal
Atomic # 6 Polarization: -22.98 SS G_CDS: 4.57 Total: -18.41 kcal
Atomic # 7 Polarization: -88.47 SS G_CDS: -2.96 Total: -91.43 kcal
Atomic # 8 Polarization: -23.24 SS G_CDS: -0.04 Total: -23.28 kcal
Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.94 kcal
Atomic # 16 Polarization: -8.67 SS G_CDS: -1.05 Total: -9.71 kcal
Total: -73.25 1.83 -71.42 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601678964.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.995 kcal
(2) G-P(sol) polarization free energy of solvation -73.255 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.260 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds