Wall clock time and date at job start Tue Mar 31 2020 12:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46900 * 111.00009 * 294.29431 * 10 9 7 12 12 C 1.53239 * 109.33901 * 172.75075 * 11 10 9 13 13 N 1.47077 * 108.52401 * 53.83519 * 12 11 10 14 14 C 1.34771 * 120.88346 * 128.79408 * 13 12 11 15 15 O 1.21281 * 119.99960 * 180.02562 * 14 13 12 16 16 C 1.50695 * 119.99890 * 0.02562 * 14 13 12 17 17 S 1.81405 * 109.47239 * 180.02562 * 16 14 13 18 18 C 1.76193 * 103.00160 * 180.02562 * 17 16 14 19 19 C 1.38978 * 120.08354 * 359.72782 * 18 17 16 20 20 C 1.38075 * 119.92112 * 179.76653 * 19 18 17 21 21 C 1.38303 * 120.08170 * 0.48146 * 20 19 18 22 22 C 1.38305 * 120.15640 * 359.77226 * 21 20 19 23 23 C 1.38076 * 120.08676 * 359.97438 * 22 21 20 24 24 C 1.47087 * 118.23490 * 308.81496 * 13 12 11 25 25 C 1.46905 * 110.99974 * 170.00187 * 10 9 7 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09001 * 109.49699 * 292.71058 * 11 10 9 30 30 H 1.09003 * 109.48977 * 52.79405 * 11 10 9 31 31 H 1.09005 * 109.62810 * 294.12178 * 12 11 10 32 32 H 1.08998 * 109.62826 * 173.54600 * 12 11 10 33 33 H 1.09000 * 109.47677 * 299.99888 * 16 14 13 34 34 H 1.09001 * 109.47375 * 60.00440 * 16 14 13 35 35 H 1.07999 * 120.03541 * 359.97438 * 19 18 17 36 36 H 1.07996 * 119.96290 * 180.23342 * 20 19 18 37 37 H 1.07999 * 119.92223 * 179.74048 * 21 20 19 38 38 H 1.08010 * 119.95579 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.04210 * 179.97438 * 23 22 21 40 40 H 1.08999 * 109.62348 * 291.47442 * 24 13 12 41 41 H 1.08990 * 109.78576 * 170.98799 * 24 13 12 42 42 H 1.09003 * 109.48745 * 307.20965 * 25 10 9 43 43 H 1.08999 * 109.49183 * 67.28681 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 4.0011 -2.5791 0.0106 11 6 3.6394 -3.2610 1.2604 12 6 4.0055 -4.7451 1.1531 13 7 5.4230 -4.8505 0.7751 14 6 6.2702 -5.6286 1.4773 15 8 7.4361 -5.7034 1.1516 16 6 5.7689 -6.4058 2.6671 17 16 7.1378 -7.3480 3.3944 18 6 6.3729 -8.1783 4.7471 19 6 5.0198 -7.9919 5.0038 20 6 4.4228 -8.6480 6.0619 21 6 5.1717 -9.4820 6.8720 22 6 6.5196 -9.6658 6.6228 23 6 7.1224 -9.0171 5.5633 24 6 5.8914 -4.0838 -0.3895 25 6 5.4510 -2.6258 -0.2214 26 1 -0.4849 0.8400 0.0004 27 1 3.8786 -0.6821 -0.8838 28 1 3.8711 -0.6785 0.8962 29 1 4.1835 -2.8112 2.0909 30 1 2.5674 -3.1623 1.4314 31 1 3.3871 -5.2207 0.3918 32 1 3.8460 -5.2321 2.1151 33 1 5.3686 -5.7155 3.4096 34 1 4.9840 -7.0918 2.3485 35 1 4.4354 -7.3373 4.3743 36 1 3.3705 -8.5066 6.2597 37 1 4.7030 -9.9906 7.7014 38 1 7.1016 -10.3176 7.2577 39 1 8.1751 -9.1608 5.3696 40 1 5.4543 -4.4959 -1.2990 41 1 6.9785 -4.1332 -0.4507 42 1 5.6929 -2.0663 -1.1251 43 1 5.9699 -2.1848 0.6297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:26 Heat of formation + Delta-G solvation = 10.063220 kcal Electronic energy + Delta-G solvation = -23737.963656 eV Core-core repulsion = 20295.662697 eV Total energy + Delta-G solvation = -3442.300959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14679 -39.18771 -37.73844 -34.64275 -32.57625 -31.87241 -31.24914 -31.18504 -29.85535 -28.55914 -25.68026 -23.51237 -23.08308 -22.88803 -21.86351 -20.72078 -19.03683 -18.08319 -17.33981 -16.89355 -16.51173 -15.91787 -15.88743 -15.22977 -14.87380 -14.72498 -14.63963 -14.31920 -13.93149 -13.81206 -13.69357 -13.61192 -13.31988 -13.23426 -12.61238 -12.46320 -12.31614 -11.79698 -11.63347 -11.46190 -11.26901 -11.23954 -10.89886 -10.66921 -10.42754 -10.37217 -10.05834 -9.99609 -9.94569 -9.42180 -9.30821 -8.69375 -8.66083 -7.62138 -7.56706 -6.15345 -4.13764 0.90225 1.05045 1.05904 2.11344 2.42898 2.92657 3.21719 3.29720 3.31118 3.40278 4.21239 4.33204 4.49364 4.52402 4.61116 4.63896 4.77310 4.85421 5.07076 5.08057 5.15278 5.19338 5.22205 5.33146 5.41738 5.47036 5.58127 5.65311 5.66135 5.85618 5.94585 6.05919 6.07121 6.18520 6.24507 6.29844 6.44776 6.58319 6.71465 6.83434 7.27056 7.44875 7.71552 7.85704 7.97503 8.52234 8.91032 9.46010 10.97364 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002608 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.580056 B =10734.509569 C =11801.534899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.513 4.513 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.049 3.951 12 C 0.107 3.893 13 N -0.602 5.602 14 C 0.533 3.467 15 O -0.531 6.531 16 C -0.149 4.149 17 S -0.036 6.036 18 C -0.098 4.098 19 C -0.137 4.137 20 C -0.098 4.098 21 C -0.129 4.129 22 C -0.101 4.101 23 C -0.102 4.102 24 C 0.120 3.880 25 C 0.037 3.963 26 H 0.265 0.735 27 H 0.027 0.973 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.036 -17.468 10.765 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.551 4.551 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.080 4.080 12 C -0.016 4.016 13 N -0.336 5.336 14 C 0.319 3.681 15 O -0.409 6.409 16 C -0.300 4.300 17 S 0.208 5.792 18 C -0.211 4.211 19 C -0.161 4.161 20 C -0.118 4.118 21 C -0.150 4.150 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.002 4.002 25 C -0.092 4.092 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.007 0.993 29 H 0.044 0.956 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 12.422 -17.553 9.697 23.589 hybrid contribution -0.861 1.538 1.140 2.099 sum 11.561 -16.016 10.837 22.530 Atomic orbital electron populations 1.69882 1.06118 1.26990 1.50652 1.24893 0.94741 0.98892 0.94688 0.86875 0.80264 0.84005 0.78686 1.20055 1.21141 1.19327 1.20987 0.88533 0.94740 1.50884 0.90057 1.20184 0.97207 0.83656 0.95302 1.61905 1.09973 1.19483 1.33727 1.22377 1.03188 0.91485 0.90991 1.22087 0.80231 0.98554 1.00709 1.48138 1.10144 1.45112 1.30166 1.19476 0.85873 0.79718 0.83065 1.90726 1.16695 1.64489 1.68945 1.23861 1.02545 1.02881 1.00703 1.86171 1.12698 1.52188 1.28119 1.22148 0.97000 1.01544 1.00418 1.21219 0.93422 1.01798 0.99640 1.21101 0.99985 0.96148 0.94577 1.21193 0.94345 0.99446 1.00027 1.21100 0.95067 0.99002 0.96950 1.20737 0.99725 0.96982 0.95106 1.21780 1.00367 0.90783 0.87304 1.22473 0.90336 0.95273 1.01112 0.92547 0.95525 0.99299 0.95550 0.87672 0.89912 0.90259 0.86435 0.86416 0.85892 0.85603 0.85846 0.85564 0.85475 0.90474 0.89092 0.89804 0.95343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.96 55.43 0.77 -25.68 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.51 -13.73 8.96 -34.44 -0.31 -14.04 16 8 H 0.08 2.34 7.37 -52.49 -0.39 1.95 16 9 C 0.16 3.71 3.79 -4.98 -0.02 3.69 16 10 N -0.53 -10.06 4.62 -235.76 -1.09 -11.15 16 11 C 0.05 0.81 5.46 -3.70 -0.02 0.79 16 12 C 0.11 1.37 6.50 -3.60 -0.02 1.34 16 13 N -0.60 -8.26 3.01 -172.47 -0.52 -8.78 16 14 C 0.53 7.40 7.73 -10.99 -0.08 7.32 16 15 O -0.53 -9.04 15.32 5.56 0.09 -8.96 16 16 C -0.15 -1.58 3.18 36.00 0.11 -1.47 16 17 S -0.04 -0.43 21.06 -107.50 -2.26 -2.69 16 18 C -0.10 -1.02 6.11 -39.03 -0.24 -1.26 16 19 C -0.14 -1.28 9.36 -39.37 -0.37 -1.65 16 20 C -0.10 -0.81 10.04 -39.62 -0.40 -1.21 16 21 C -0.13 -0.98 10.04 -39.53 -0.40 -1.38 16 22 C -0.10 -0.79 10.04 -39.62 -0.40 -1.19 16 23 C -0.10 -0.95 9.79 -39.37 -0.39 -1.33 16 24 C 0.12 1.71 6.59 -3.60 -0.02 1.68 16 25 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.03 0.61 7.40 -51.93 -0.38 0.23 16 28 H -0.01 -0.25 7.17 -51.93 -0.37 -0.62 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 1.94 6.67 -51.93 -0.35 1.59 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.76 6.02 -51.93 -0.31 0.45 16 33 H 0.12 1.08 7.26 -51.92 -0.38 0.71 16 34 H 0.12 1.01 7.62 -51.92 -0.40 0.62 16 35 H 0.12 0.98 5.88 -52.49 -0.31 0.67 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.28 7.07 -51.93 -0.37 0.92 16 42 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -31.91 358.45 -11.17 -43.07 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.22 Total: -1.03 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.67 Total: -6.28 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.83 Total: -45.62 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -2.26 Total: -2.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.91 -11.17 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.134 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds