Wall clock time and date at job start Tue Mar 31 2020 12:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46900 * 111.00009 * 294.29431 * 10 9 7 12 12 C 1.53239 * 109.33901 * 172.75075 * 11 10 9 13 13 N 1.47077 * 108.52401 * 53.83519 * 12 11 10 14 14 C 1.34771 * 120.88346 * 128.79408 * 13 12 11 15 15 O 1.21281 * 119.99960 * 180.02562 * 14 13 12 16 16 C 1.50695 * 119.99890 * 0.02562 * 14 13 12 17 17 S 1.81405 * 109.47239 * 180.02562 * 16 14 13 18 18 C 1.76193 * 103.00160 * 180.02562 * 17 16 14 19 19 C 1.38978 * 120.08354 * 359.72782 * 18 17 16 20 20 C 1.38075 * 119.92112 * 179.76653 * 19 18 17 21 21 C 1.38303 * 120.08170 * 0.48146 * 20 19 18 22 22 C 1.38305 * 120.15640 * 359.77226 * 21 20 19 23 23 C 1.38076 * 120.08676 * 359.97438 * 22 21 20 24 24 C 1.47087 * 118.23490 * 308.81496 * 13 12 11 25 25 C 1.46905 * 110.99974 * 170.00187 * 10 9 7 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09001 * 109.49699 * 292.71058 * 11 10 9 30 30 H 1.09003 * 109.48977 * 52.79405 * 11 10 9 31 31 H 1.09005 * 109.62810 * 294.12178 * 12 11 10 32 32 H 1.08998 * 109.62826 * 173.54600 * 12 11 10 33 33 H 1.09000 * 109.47677 * 299.99888 * 16 14 13 34 34 H 1.09001 * 109.47375 * 60.00440 * 16 14 13 35 35 H 1.07999 * 120.03541 * 359.97438 * 19 18 17 36 36 H 1.07996 * 119.96290 * 180.23342 * 20 19 18 37 37 H 1.07999 * 119.92223 * 179.74048 * 21 20 19 38 38 H 1.08010 * 119.95579 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.04210 * 179.97438 * 23 22 21 40 40 H 1.08999 * 109.62348 * 291.47442 * 24 13 12 41 41 H 1.08990 * 109.78576 * 170.98799 * 24 13 12 42 42 H 1.09003 * 109.48745 * 307.20965 * 25 10 9 43 43 H 1.08999 * 109.49183 * 67.28681 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 4.0011 -2.5791 0.0106 11 6 3.6394 -3.2610 1.2604 12 6 4.0055 -4.7451 1.1531 13 7 5.4230 -4.8505 0.7751 14 6 6.2702 -5.6286 1.4773 15 8 7.4361 -5.7034 1.1516 16 6 5.7689 -6.4058 2.6671 17 16 7.1378 -7.3480 3.3944 18 6 6.3729 -8.1783 4.7471 19 6 5.0198 -7.9919 5.0038 20 6 4.4228 -8.6480 6.0619 21 6 5.1717 -9.4820 6.8720 22 6 6.5196 -9.6658 6.6228 23 6 7.1224 -9.0171 5.5633 24 6 5.8914 -4.0838 -0.3895 25 6 5.4510 -2.6258 -0.2214 26 1 -0.4849 0.8400 0.0004 27 1 3.8786 -0.6821 -0.8838 28 1 3.8711 -0.6785 0.8962 29 1 4.1835 -2.8112 2.0909 30 1 2.5674 -3.1623 1.4314 31 1 3.3871 -5.2207 0.3918 32 1 3.8460 -5.2321 2.1151 33 1 5.3686 -5.7155 3.4096 34 1 4.9840 -7.0918 2.3485 35 1 4.4354 -7.3373 4.3743 36 1 3.3705 -8.5066 6.2597 37 1 4.7030 -9.9906 7.7014 38 1 7.1016 -10.3176 7.2577 39 1 8.1751 -9.1608 5.3696 40 1 5.4543 -4.4959 -1.2990 41 1 6.9785 -4.1332 -0.4507 42 1 5.6929 -2.0663 -1.1251 43 1 5.9699 -2.1848 0.6297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:26 Heat of formation + Delta-G solvation = -9.483160 kcal Electronic energy + Delta-G solvation = -23738.811251 eV Core-core repulsion = 20295.662697 eV Total energy + Delta-G solvation = -3443.148554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29966 -39.80152 -39.07768 -36.06467 -34.48451 -32.90220 -32.08138 -31.85139 -30.97762 -30.09971 -27.19597 -24.74174 -23.85791 -23.59564 -23.30618 -22.12719 -20.15018 -18.98706 -18.89052 -18.32312 -17.27604 -16.96179 -16.84382 -16.56671 -16.07884 -15.97071 -15.79459 -15.41806 -15.23582 -14.94316 -14.82282 -14.48078 -14.32262 -14.14163 -14.09330 -13.72268 -13.53034 -13.17935 -12.91856 -12.56957 -12.45677 -12.33190 -12.24259 -12.06888 -11.96272 -11.85916 -11.43190 -11.18090 -11.07072 -10.77928 -10.73504 -9.92957 -9.88365 -9.09500 -8.43751 -8.28348 -6.31173 0.23561 0.26134 0.42869 1.33152 1.34872 1.36240 1.36759 1.45531 1.86429 2.33657 2.78359 3.04008 3.11552 3.22860 3.85671 3.88292 3.93303 3.98941 4.00644 4.10496 4.17838 4.22692 4.26755 4.37938 4.48944 4.52166 4.58608 4.69739 4.78697 4.81027 4.82902 4.91106 5.01812 5.08052 5.09825 5.31722 5.33307 5.46878 5.51738 5.58516 5.90008 6.00047 6.20301 6.29645 6.58044 6.75193 6.89500 7.32569 8.87433 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002608 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.580056 B =10734.509569 C =11801.534899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.513 4.513 8 H 0.048 0.952 9 C 0.171 3.829 10 N -0.539 5.539 11 C 0.048 3.952 12 C 0.117 3.883 13 N -0.603 5.603 14 C 0.532 3.468 15 O -0.565 6.565 16 C -0.137 4.137 17 S -0.084 6.084 18 C -0.110 4.110 19 C -0.147 4.147 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.104 4.104 23 C -0.117 4.117 24 C 0.125 3.875 25 C 0.041 3.959 26 H 0.266 0.734 27 H 0.029 0.971 28 H -0.015 1.015 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.646 -18.239 11.972 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.044 3.956 10 N -0.263 5.263 11 C -0.081 4.081 12 C -0.005 4.005 13 N -0.336 5.336 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.287 4.287 17 S 0.159 5.841 18 C -0.222 4.222 19 C -0.171 4.171 20 C -0.126 4.126 21 C -0.150 4.150 22 C -0.124 4.124 23 C -0.141 4.141 24 C 0.002 3.998 25 C -0.088 4.088 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.002 0.998 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.147 0.853 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.038 -18.351 10.915 25.018 hybrid contribution -1.083 1.656 0.823 2.143 sum 11.955 -16.694 11.738 23.652 Atomic orbital electron populations 1.70024 1.07929 1.28029 1.52503 1.25749 0.95505 1.02793 0.94543 0.85815 0.79279 0.79277 0.79145 1.19155 1.20953 1.17918 1.21215 0.90678 0.93458 1.49734 0.93411 1.19940 0.94573 0.86063 0.94994 1.61820 1.12023 1.17302 1.35198 1.22370 1.01727 0.93984 0.89972 1.22075 0.79644 0.95804 1.02997 1.48186 1.10455 1.44995 1.29965 1.19933 0.85285 0.79377 0.83408 1.90715 1.18213 1.65604 1.69962 1.23805 1.02313 1.03085 0.99527 1.86310 1.14610 1.53351 1.29818 1.22118 0.97609 1.02342 1.00179 1.21453 0.93097 1.02250 1.00320 1.21431 1.01126 0.95859 0.94176 1.21577 0.94273 0.98846 1.00327 1.21420 0.95596 0.98816 0.96574 1.20958 1.00111 0.97311 0.95687 1.21686 1.00501 0.89609 0.87960 1.22509 0.88163 0.96840 1.01288 0.92455 0.95254 0.99771 0.95683 0.90035 0.89462 0.86479 0.84651 0.83964 0.84755 0.83625 0.83381 0.83245 0.85290 0.89788 0.88891 0.88979 0.95769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 2 C 0.01 0.66 5.47 84.66 0.46 1.13 16 3 Si 0.94 42.63 27.47 68.60 1.88 44.51 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.51 -27.84 8.96 25.60 0.23 -27.62 16 8 H 0.05 2.85 7.37 -2.91 -0.02 2.83 16 9 C 0.17 7.74 3.79 85.56 0.32 8.06 16 10 N -0.54 -20.24 4.62 -899.82 -4.16 -24.40 16 11 C 0.05 1.58 5.46 86.38 0.47 2.05 16 12 C 0.12 2.74 6.50 86.35 0.56 3.30 16 13 N -0.60 -15.43 3.01 -817.96 -2.46 -17.89 16 14 C 0.53 13.94 7.73 87.66 0.68 14.61 16 15 O -0.57 -18.87 15.32 -3.03 -0.05 -18.92 16 16 C -0.14 -2.62 3.18 71.23 0.23 -2.39 16 17 S -0.08 -1.94 21.06 -56.49 -1.19 -3.13 16 18 C -0.11 -2.16 6.11 22.63 0.14 -2.02 16 19 C -0.15 -2.45 9.36 22.41 0.21 -2.24 16 20 C -0.11 -1.47 10.04 22.25 0.22 -1.24 16 21 C -0.13 -1.61 10.04 22.30 0.22 -1.39 16 22 C -0.10 -1.41 10.04 22.25 0.22 -1.19 16 23 C -0.12 -2.06 9.79 22.41 0.22 -1.84 16 24 C 0.13 3.37 6.59 86.35 0.57 3.94 16 25 C 0.04 1.26 5.62 86.38 0.49 1.75 16 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 27 H 0.03 1.31 7.40 -2.38 -0.02 1.29 16 28 H -0.02 -0.71 7.17 -2.39 -0.02 -0.72 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 3.05 6.67 -2.39 -0.02 3.04 16 31 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.12 1.85 6.02 -2.39 -0.01 1.84 16 33 H 0.14 2.11 7.26 -2.39 -0.02 2.09 16 34 H 0.14 2.01 7.62 -2.39 -0.02 1.99 16 35 H 0.13 1.78 5.88 -2.91 -0.02 1.76 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.09 2.52 7.07 -2.39 -0.02 2.50 16 42 H 0.09 2.67 7.99 -2.39 -0.02 2.65 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.25 358.45 0.52 -69.73 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.95 Total: 11.65 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 5.25 Total: -5.08 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -6.32 Total: -98.76 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.51 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -1.19 Total: -3.13 kcal Total: -70.25 0.52 -69.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.245 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds