Wall clock time and date at job start Tue Mar 31 2020 12:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21699 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.46585 * 119.99881 * 179.97438 * 14 13 12 17 17 S 1.75833 * 125.45771 * 359.69872 * 16 14 13 18 18 C 1.70621 * 91.56321 * 179.90910 * 17 16 14 19 19 C 1.33812 * 110.95351 * 0.35896 * 18 17 16 20 20 C 1.36640 * 125.46103 * 180.02562 * 16 14 13 21 21 C 1.50704 * 123.34855 * 0.02612 * 20 16 14 22 22 C 1.53002 * 117.49689 * 188.74688 * 21 20 16 23 23 C 1.52996 * 117.49937 * 120.08765 * 21 20 16 24 24 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 25 25 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 26 26 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 28 28 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 29 29 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 30 30 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 31 31 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 32 32 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 33 33 H 1.07997 * 124.51823 * 180.02562 * 18 17 16 34 34 H 1.07993 * 122.45262 * 179.69884 * 19 18 17 35 35 H 1.08999 * 115.55369 * 334.41174 * 21 20 16 36 36 H 1.08994 * 117.50415 * 359.97438 * 22 21 20 37 37 H 1.09003 * 117.50029 * 145.02614 * 22 21 20 38 38 H 1.09003 * 117.50004 * 214.97580 * 23 21 20 39 39 H 1.08997 * 117.49984 * 359.97438 * 23 21 20 40 40 H 1.09002 * 109.49848 * 178.74812 * 24 12 11 41 41 H 1.08999 * 109.49849 * 58.64620 * 24 12 11 42 42 H 1.09004 * 109.59094 * 246.19900 * 25 9 7 43 43 H 1.09001 * 109.59077 * 6.49172 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5964 -0.9816 -3.4482 16 6 7.8431 -2.7752 -4.9098 17 16 7.3951 -4.3634 -5.5167 18 6 8.6091 -4.2998 -6.7140 19 6 9.2974 -3.1549 -6.6372 20 6 8.8904 -2.2953 -5.6445 21 6 9.5354 -0.9569 -5.3917 22 6 10.5582 -0.4609 -6.4158 23 6 11.0245 -0.9453 -5.0406 24 6 4.8755 -2.9898 -1.0921 25 6 4.2351 -2.2628 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9908 0.3501 -1.7559 28 1 4.5579 0.3822 -0.9097 29 1 3.7035 -1.5726 -3.0945 30 1 4.9277 -0.2876 -3.2372 31 1 6.2781 -1.3980 -1.4672 32 1 5.8557 -3.5342 -3.4126 33 1 8.8002 -5.0818 -7.4339 34 1 10.1133 -2.9233 -7.3056 35 1 8.8998 -0.2115 -4.9136 36 1 10.7650 -1.1027 -7.2721 37 1 10.5959 0.6108 -6.6111 38 1 11.3687 -0.1921 -4.3318 39 1 11.5376 -1.9057 -4.9921 40 1 5.6320 -3.6849 -0.7278 41 1 4.1091 -3.5392 -1.6388 42 1 5.0116 -1.7874 0.6940 43 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609332411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:16 Heat of formation + Delta-G solvation = 46.098266 kcal Electronic energy + Delta-G solvation = -24532.195317 eV Core-core repulsion = 21091.456954 eV Total energy + Delta-G solvation = -3440.738362 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16293 -38.92942 -37.46430 -35.85762 -34.58627 -32.26332 -30.73014 -30.40571 -29.55719 -25.91031 -24.58947 -22.87186 -22.74007 -22.30508 -22.16991 -20.91832 -19.95666 -18.68764 -17.99213 -16.93553 -16.63909 -15.95222 -15.59921 -15.08405 -14.84346 -14.72199 -14.18355 -14.01934 -13.78821 -13.64989 -13.46598 -13.00927 -12.88059 -12.71905 -12.30612 -12.10685 -11.93021 -11.79527 -11.70496 -11.27378 -11.07980 -10.86784 -10.84346 -10.61061 -10.54852 -10.16242 -10.06332 -9.95403 -9.67811 -9.49524 -9.10943 -8.80394 -8.62552 -8.59169 -6.99316 -5.94614 -3.30787 0.27259 1.21929 1.60449 2.08698 3.12905 3.18888 3.35754 3.51342 3.55063 3.80244 4.43047 4.54712 4.57343 4.73408 4.77128 4.87542 4.95608 5.05188 5.17927 5.22763 5.29615 5.40657 5.41702 5.58052 5.64535 5.73542 5.81352 5.81913 5.90035 6.01209 6.02311 6.06709 6.13808 6.27596 6.35442 6.42280 6.56207 6.63515 6.67734 6.71783 6.91505 7.53065 7.96055 8.21764 8.32703 8.93718 9.72349 10.09641 11.21202 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.003174 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.702145 B = 8820.109151 C = 9601.387851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.141 4.141 12 C 0.152 3.848 13 N -0.720 5.720 14 C 0.589 3.411 15 O -0.525 6.525 16 C -0.261 4.261 17 S 0.198 5.802 18 C -0.230 4.230 19 C -0.147 4.147 20 C 0.007 3.993 21 C -0.102 4.102 22 C -0.178 4.178 23 C -0.163 4.163 24 C -0.141 4.141 25 C 0.152 3.848 26 H 0.263 0.737 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.393 0.607 33 H 0.169 0.831 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.719 -9.468 -14.205 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.049 3.951 13 N -0.370 5.370 14 C 0.375 3.625 15 O -0.403 6.403 16 C -0.382 4.382 17 S 0.467 5.533 18 C -0.368 4.368 19 C -0.178 4.178 20 C -0.008 4.008 21 C -0.122 4.122 22 C -0.215 4.215 23 C -0.200 4.200 24 C -0.181 4.181 25 C 0.026 3.974 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.227 0.773 33 H 0.186 0.814 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.687 -9.718 -13.509 25.778 hybrid contribution 1.367 1.429 -0.837 2.147 sum 21.053 -8.289 -14.346 26.791 Atomic orbital electron populations 1.69838 1.05737 1.26586 1.52962 1.25274 0.95221 0.97615 0.99388 0.86974 0.80082 0.84632 0.77123 1.21568 1.23123 1.19462 1.18913 0.84916 0.94775 1.40321 0.89627 1.44402 1.08660 1.33368 1.46588 1.21312 0.97247 0.92012 0.89153 1.22406 0.97557 0.98685 0.99494 1.21041 0.94465 0.93697 0.85885 1.46175 1.33999 1.21868 1.34936 1.16905 0.79558 0.85099 0.80980 1.90774 1.64086 1.19585 1.65841 1.24492 1.06350 1.01043 1.06277 1.83042 1.32111 1.13401 1.24725 1.25210 1.02610 1.03256 1.05681 1.19853 1.03211 0.93922 1.00861 1.18692 0.93410 0.95415 0.93294 1.21011 0.92081 0.95067 1.04057 1.23063 1.03693 1.01693 0.93066 1.22949 0.95531 1.02995 0.98538 1.22345 0.99593 0.97632 0.98546 1.20858 0.92488 0.91491 0.92595 0.92758 0.90708 0.95448 0.91594 0.92246 0.89638 0.77299 0.81374 0.83883 0.84466 0.88750 0.88321 0.88259 0.88881 0.92044 0.91306 0.95668 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.97 55.49 0.78 -27.15 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.75 24.34 -169.99 -4.14 18.62 16 4 H -0.29 -7.24 6.62 56.52 0.37 -6.86 16 5 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.27 -6.87 6.64 56.52 0.38 -6.49 16 7 C -0.26 -7.26 10.03 -15.06 -0.15 -7.41 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 9 N -0.61 -14.34 2.77 -172.32 -0.48 -14.82 16 10 C 0.13 2.89 4.20 -3.71 -0.02 2.88 16 11 C -0.14 -2.65 5.66 -26.59 -0.15 -2.80 16 12 C 0.15 2.49 2.41 -67.87 -0.16 2.33 16 13 N -0.72 -10.00 5.07 -55.09 -0.28 -10.28 16 14 C 0.59 8.82 7.74 -12.89 -0.10 8.72 16 15 O -0.52 -9.40 13.96 5.19 0.07 -9.33 16 16 C -0.26 -3.23 6.45 -36.79 -0.24 -3.47 16 17 S 0.20 1.76 22.16 -107.50 -2.38 -0.62 16 18 C -0.23 -1.81 10.92 29.18 0.32 -1.49 16 19 C -0.15 -1.32 9.46 -41.41 -0.39 -1.72 16 20 C 0.01 0.08 5.60 -105.48 -0.59 -0.51 16 21 C -0.10 -1.18 5.44 -91.77 -0.50 -1.68 16 22 C -0.18 -1.54 9.95 -26.69 -0.27 -1.80 16 23 C -0.16 -1.54 10.22 -26.70 -0.27 -1.81 16 24 C -0.14 -2.19 5.55 -26.61 -0.15 -2.34 16 25 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.07 1.84 4.49 -51.93 -0.23 1.61 16 28 H 0.03 0.62 7.07 -51.93 -0.37 0.26 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.53 7.58 -51.93 -0.39 1.13 16 32 H 0.39 4.51 7.72 -40.82 -0.31 4.19 16 33 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.14 1.00 6.61 -52.49 -0.35 0.65 16 35 H 0.14 1.94 6.17 -51.93 -0.32 1.62 16 36 H 0.09 0.68 6.56 -51.93 -0.34 0.34 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -32.39 351.70 -10.06 -42.45 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.15 Total: 3.46 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.78 Total: -7.62 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.02 Total: -52.25 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.14 Total: 18.62 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.38 Total: -0.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.39 -10.06 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609332411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.545 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds