Wall clock time and date at job start Tue Mar 31 2020 12:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21699 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.46585 * 119.99881 * 179.97438 * 14 13 12 17 17 S 1.75833 * 125.45771 * 359.69872 * 16 14 13 18 18 C 1.70621 * 91.56321 * 179.90910 * 17 16 14 19 19 C 1.33812 * 110.95351 * 0.35896 * 18 17 16 20 20 C 1.36640 * 125.46103 * 180.02562 * 16 14 13 21 21 C 1.50704 * 123.34855 * 0.02612 * 20 16 14 22 22 C 1.53002 * 117.49689 * 188.74688 * 21 20 16 23 23 C 1.52996 * 117.49937 * 120.08765 * 21 20 16 24 24 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 25 25 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 26 26 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 28 28 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 29 29 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 30 30 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 31 31 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 32 32 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 33 33 H 1.07997 * 124.51823 * 180.02562 * 18 17 16 34 34 H 1.07993 * 122.45262 * 179.69884 * 19 18 17 35 35 H 1.08999 * 115.55369 * 334.41174 * 21 20 16 36 36 H 1.08994 * 117.50415 * 359.97438 * 22 21 20 37 37 H 1.09003 * 117.50029 * 145.02614 * 22 21 20 38 38 H 1.09003 * 117.50004 * 214.97580 * 23 21 20 39 39 H 1.08997 * 117.49984 * 359.97438 * 23 21 20 40 40 H 1.09002 * 109.49848 * 178.74812 * 24 12 11 41 41 H 1.08999 * 109.49849 * 58.64620 * 24 12 11 42 42 H 1.09004 * 109.59094 * 246.19900 * 25 9 7 43 43 H 1.09001 * 109.59077 * 6.49172 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5964 -0.9816 -3.4482 16 6 7.8431 -2.7752 -4.9098 17 16 7.3951 -4.3634 -5.5167 18 6 8.6091 -4.2998 -6.7140 19 6 9.2974 -3.1549 -6.6372 20 6 8.8904 -2.2953 -5.6445 21 6 9.5354 -0.9569 -5.3917 22 6 10.5582 -0.4609 -6.4158 23 6 11.0245 -0.9453 -5.0406 24 6 4.8755 -2.9898 -1.0921 25 6 4.2351 -2.2628 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9908 0.3501 -1.7559 28 1 4.5579 0.3822 -0.9097 29 1 3.7035 -1.5726 -3.0945 30 1 4.9277 -0.2876 -3.2372 31 1 6.2781 -1.3980 -1.4672 32 1 5.8557 -3.5342 -3.4126 33 1 8.8002 -5.0818 -7.4339 34 1 10.1133 -2.9233 -7.3056 35 1 8.8998 -0.2115 -4.9136 36 1 10.7650 -1.1027 -7.2721 37 1 10.5959 0.6108 -6.6111 38 1 11.3687 -0.1921 -4.3318 39 1 11.5376 -1.9057 -4.9921 40 1 5.6320 -3.6849 -0.7278 41 1 4.1091 -3.5392 -1.6388 42 1 5.0116 -1.7874 0.6940 43 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609332411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:15 Heat of formation + Delta-G solvation = 25.630767 kcal Electronic energy + Delta-G solvation = -24533.082854 eV Core-core repulsion = 21091.456954 eV Total energy + Delta-G solvation = -3441.625900 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23739 -39.94219 -38.89571 -36.57866 -36.09977 -34.12190 -32.20579 -32.00383 -30.62653 -27.24472 -25.94140 -24.48010 -23.83234 -23.30941 -23.03144 -22.10640 -21.42042 -19.80910 -18.81896 -18.78380 -17.69015 -17.27674 -16.83837 -16.26384 -16.18448 -15.95924 -15.58678 -15.38626 -14.97492 -14.78839 -14.65334 -14.54882 -14.16729 -14.00634 -13.83867 -13.48387 -13.30229 -12.86004 -12.72389 -12.58564 -12.39408 -12.25416 -12.07989 -11.98414 -11.79418 -11.60075 -11.51560 -11.47106 -11.31017 -10.91087 -10.73945 -10.20579 -9.72478 -9.30868 -8.98983 -8.18769 -5.50117 -0.50816 0.49447 0.92029 1.27873 1.34971 1.38445 1.46947 2.04547 2.11312 2.39185 3.02246 3.05274 3.31537 3.64504 3.73180 3.85302 3.89812 3.95815 4.07820 4.18345 4.19103 4.27360 4.36427 4.42708 4.56380 4.63919 4.65325 4.74264 4.80962 4.88202 4.91114 4.97607 5.04272 5.06154 5.08855 5.12029 5.22610 5.31548 5.36678 5.43696 5.51656 5.85293 6.11626 6.45176 6.88559 7.12776 7.59490 8.00917 9.00861 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.003174 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.702145 B = 8820.109151 C = 9601.387851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.031 4.031 3 Si 0.937 3.063 4 H -0.281 1.281 5 H -0.308 1.308 6 H -0.264 1.264 7 C -0.245 4.245 8 H 0.062 0.938 9 N -0.619 5.619 10 C 0.127 3.873 11 C -0.130 4.130 12 C 0.162 3.838 13 N -0.711 5.711 14 C 0.586 3.414 15 O -0.565 6.565 16 C -0.308 4.308 17 S 0.233 5.767 18 C -0.210 4.210 19 C -0.161 4.161 20 C 0.007 3.993 21 C -0.133 4.133 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.127 4.127 25 C 0.145 3.855 26 H 0.261 0.739 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.407 0.593 33 H 0.204 0.796 34 H 0.166 0.834 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.526 -11.499 -16.262 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.226 4.226 3 Si 0.767 3.233 4 H -0.208 1.208 5 H -0.237 1.237 6 H -0.189 1.189 7 C -0.374 4.374 8 H 0.080 0.920 9 N -0.344 5.344 10 C 0.001 3.999 11 C -0.171 4.171 12 C 0.057 3.943 13 N -0.361 5.361 14 C 0.374 3.626 15 O -0.446 6.446 16 C -0.428 4.428 17 S 0.502 5.498 18 C -0.348 4.348 19 C -0.191 4.191 20 C -0.008 4.008 21 C -0.153 4.153 22 C -0.194 4.194 23 C -0.197 4.197 24 C -0.166 4.166 25 C 0.020 3.980 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.221 0.779 34 H 0.184 0.816 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.535 -11.795 -15.581 29.828 hybrid contribution 0.556 1.951 -0.252 2.045 sum 23.091 -9.843 -15.833 29.678 Atomic orbital electron populations 1.69946 1.07161 1.27113 1.55792 1.25821 0.95752 1.00519 1.00497 0.86058 0.78843 0.81121 0.77274 1.20847 1.23690 1.18906 1.18914 0.86565 0.93707 1.38248 0.92020 1.44534 1.08050 1.34545 1.47244 1.21257 0.96423 0.92087 0.90121 1.22236 0.98036 0.98905 0.97874 1.20742 0.93375 0.93580 0.86577 1.45922 1.33727 1.22228 1.34251 1.17320 0.79257 0.84717 0.81318 1.90755 1.65227 1.21398 1.67180 1.24334 1.08016 1.03544 1.06863 1.82877 1.31973 1.10509 1.24424 1.25695 1.00813 1.03344 1.04952 1.20003 1.04387 0.93900 1.00827 1.18946 0.92935 0.95462 0.93507 1.20906 0.92744 0.95089 1.06531 1.23173 1.00737 1.02410 0.93075 1.23008 0.93842 1.03544 0.99278 1.22176 1.00272 0.97316 0.96813 1.21095 0.91998 0.90675 0.94281 0.92948 0.93168 0.95539 0.91758 0.92496 0.90982 0.75670 0.77934 0.81634 0.87977 0.86575 0.87839 0.88543 0.87798 0.88459 0.90949 0.94742 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.35 13.97 21.65 0.30 -60.05 16 2 C -0.03 -1.83 5.23 84.86 0.44 -1.38 16 3 Si 0.94 48.13 24.34 68.60 1.67 49.80 16 4 H -0.28 -13.97 6.62 99.48 0.66 -13.31 16 5 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 6 H -0.26 -13.17 6.64 99.48 0.66 -12.51 16 7 C -0.24 -13.83 10.03 84.03 0.84 -12.99 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 N -0.62 -29.19 2.77 -699.09 -1.94 -31.13 16 10 C 0.13 5.70 4.20 86.36 0.36 6.06 16 11 C -0.13 -4.86 5.66 30.68 0.17 -4.69 16 12 C 0.16 5.10 2.41 45.03 0.11 5.21 16 13 N -0.71 -18.84 5.07 -446.41 -2.26 -21.10 16 14 C 0.59 17.39 7.74 86.42 0.67 18.05 16 15 O -0.56 -20.82 13.96 -4.35 -0.06 -20.88 16 16 C -0.31 -7.23 6.45 24.07 0.16 -7.08 16 17 S 0.23 3.44 22.16 -56.49 -1.25 2.19 16 18 C -0.21 -2.43 10.92 66.81 0.73 -1.70 16 19 C -0.16 -2.35 9.46 21.08 0.20 -2.15 16 20 C 0.01 0.16 5.60 -20.42 -0.11 0.05 16 21 C -0.13 -3.02 5.44 -11.54 -0.06 -3.09 16 22 C -0.16 -2.41 9.95 30.62 0.30 -2.11 16 23 C -0.16 -2.82 10.22 30.62 0.31 -2.51 16 24 C -0.13 -3.64 5.55 30.67 0.17 -3.47 16 25 C 0.14 5.33 6.52 86.37 0.56 5.89 16 26 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.05 2.49 4.49 -2.39 -0.01 2.48 16 28 H 0.03 1.20 7.07 -2.38 -0.02 1.18 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.52 7.58 -2.39 -0.02 2.50 16 32 H 0.41 8.47 7.72 -92.71 -0.72 7.75 16 33 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.17 1.60 6.61 -2.91 -0.02 1.58 16 35 H 0.10 3.07 6.17 -2.39 -0.01 3.05 16 36 H 0.12 1.26 6.56 -2.39 -0.02 1.25 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 2.58 7.93 -2.39 -0.02 2.57 16 Total: -1.00 -73.05 351.70 1.54 -71.51 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.22 Total: 15.55 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.86 Total: -5.89 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -3.90 Total: -112.27 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.67 Total: 49.80 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.25 Total: 2.19 kcal Total: -73.05 1.54 -71.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609332411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.141 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds