Wall clock time and date at job start Tue Mar 31 2020 12:05:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31558 * 1
3 3 Si 1.86795 * 120.00286 * 2 1
4 4 H 1.48499 * 109.47412 * 240.00015 * 3 2 1
5 5 H 1.48503 * 109.46923 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47149 * 120.00092 * 3 2 1
7 7 C 1.38655 * 119.99702 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00079 * 180.02562 * 7 2 1
9 9 O 1.34827 * 120.00380 * 0.02562 * 7 2 1
10 10 C 1.35745 * 117.00305 * 185.05993 * 9 7 2
11 11 C 1.38881 * 120.06815 * 354.46214 * 10 9 7
12 12 C 1.38096 * 119.92922 * 179.97438 * 11 10 9
13 13 C 1.38301 * 120.07080 * 359.97438 * 12 11 10
14 14 C 1.50705 * 119.93161 * 179.97438 * 13 12 11
15 15 O 1.45206 * 109.47084 * 89.99826 * 14 13 12
16 16 C 1.34222 * 116.99789 * 180.02562 * 15 14 13
17 17 O 1.20826 * 120.00199 * 359.97438 * 16 15 14
18 18 C 1.50699 * 119.99755 * 180.02562 * 16 15 14
19 19 C 1.53007 * 109.47196 * 180.02562 * 18 16 15
20 20 C 1.52999 * 109.46958 * 179.97438 * 19 18 16
21 21 H 1.08996 * 109.82527 * 305.70177 * 20 19 18
22 22 C 1.54386 * 109.82943 * 184.81057 * 20 19 18
23 23 C 1.55447 * 102.18626 * 219.18489 * 22 20 19
24 24 C 1.54942 * 100.99016 * 34.04001 * 23 22 20
25 25 O 1.43242 * 109.82954 * 66.59127 * 20 19 18
26 26 C 1.38303 * 120.13902 * 0.27786 * 13 12 11
27 27 C 1.38095 * 120.06586 * 359.48493 * 26 13 12
28 28 H 0.97005 * 120.00004 * 359.97438 * 1 2 3
29 29 H 1.07993 * 120.03369 * 0.02562 * 11 10 9
30 30 H 1.08004 * 119.96845 * 179.97438 * 12 11 10
31 31 H 1.08994 * 109.46973 * 329.99928 * 14 13 12
32 32 H 1.08996 * 109.47082 * 209.99714 * 14 13 12
33 33 H 1.09008 * 109.47021 * 299.99814 * 18 16 15
34 34 H 1.08999 * 109.47344 * 59.99801 * 18 16 15
35 35 H 1.09003 * 109.46931 * 299.99335 * 19 18 16
36 36 H 1.08999 * 109.47176 * 59.99649 * 19 18 16
37 37 H 1.09004 * 110.84512 * 337.32194 * 22 20 19
38 38 H 1.08994 * 110.84352 * 100.93819 * 22 20 19
39 39 H 1.09007 * 111.05871 * 276.11898 * 23 22 20
40 40 H 1.09001 * 111.17926 * 152.01134 * 23 22 20
41 41 H 1.08999 * 110.30555 * 204.68860 * 24 23 22
42 42 H 1.09000 * 110.39649 * 82.56951 * 24 23 22
43 43 H 1.08004 * 119.96449 * 179.72987 * 26 13 12
44 44 H 1.08003 * 120.03471 * 180.25601 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6176 0.0000
4 1 3.1034 1.6963 -1.2125
5 1 1.2846 2.7464 0.0006
6 1 3.1034 1.6963 1.2125
7 6 2.0088 -1.2008 -0.0005
8 1 3.0888 -1.2009 -0.0001
9 8 1.3347 -2.3685 -0.0016
10 6 2.0698 -3.5047 0.1046
11 6 3.4571 -3.4396 0.0922
12 6 4.2021 -4.5972 0.2010
13 6 3.5683 -5.8204 0.3227
14 6 4.3845 -7.0818 0.4406
15 8 4.6537 -7.3550 1.8411
16 6 5.3757 -8.4515 2.1201
17 8 5.7693 -9.1599 1.2240
18 6 5.6943 -8.7997 3.5513
19 6 6.5226 -10.0856 3.5911
20 6 6.8467 -10.4387 5.0441
21 1 7.3257 -9.5903 5.5327
22 6 7.7825 -11.6658 5.0886
23 6 7.2256 -12.4593 6.3038
24 6 5.7123 -12.1459 6.1927
25 8 5.6434 -10.7844 5.7401
26 6 2.1870 -5.8891 0.3301
27 6 1.4364 -4.7346 0.2266
28 1 -0.4850 0.8401 0.0004
29 1 3.9525 -2.4846 -0.0015
30 1 5.2810 -4.5474 0.1910
31 1 5.3267 -6.9560 -0.0927
32 1 3.8305 -7.9148 0.0079
33 1 6.2627 -7.9877 4.0049
34 1 4.7668 -8.9473 4.1045
35 1 5.9546 -10.8978 3.1374
36 1 7.4501 -9.9376 3.0379
37 1 7.6991 -12.2507 4.1726
38 1 8.8142 -11.3606 5.2627
39 1 7.6373 -12.0819 7.2399
40 1 7.4145 -13.5274 6.1967
41 1 5.2329 -12.2455 7.1666
42 1 5.2390 -12.8096 5.4692
43 1 1.6950 -6.8462 0.4208
44 1 0.3577 -4.7884 0.2366
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000733438839.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:06
Heat of formation + Delta-G solvation = -148.610753 kcal
Electronic energy + Delta-G solvation = -25227.327101 eV
Core-core repulsion = 21303.099900 eV
Total energy + Delta-G solvation = -3924.227201 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.48393 -39.78065 -39.05328 -37.04082 -36.02117 -33.90868 -32.51066 -32.42394
-30.64030 -30.23093 -29.12428 -26.20032 -25.23971 -24.32495 -22.21859 -22.04603
-21.42285 -20.61535 -20.40439 -18.06992 -17.62415 -17.42176 -17.14144 -16.53273
-16.40026 -15.98751 -14.98012 -14.70945 -14.59057 -14.41809 -14.19372 -13.92663
-13.70750 -13.62515 -13.39288 -12.92350 -12.76469 -12.72582 -12.26776 -12.22182
-12.09732 -11.76225 -11.71346 -11.42315 -11.33625 -11.30750 -11.17373 -11.01462
-10.80849 -10.69994 -10.50641 -10.40361 -10.33826 -9.88597 -9.40512 -8.89332
-8.25461 -7.31783 -6.51227 -4.09970 1.97975 2.16773 2.26931 2.98862
3.10448 3.13681 3.14528 3.43675 3.92102 4.04853 4.28950 4.42950
4.49058 4.63923 4.71636 4.76726 4.90180 5.01650 5.08345 5.17418
5.17972 5.23267 5.25256 5.27144 5.32227 5.37226 5.41022 5.43391
5.60237 5.65994 5.68234 5.78140 5.79603 5.91069 6.14291 6.34684
6.59146 6.61753 6.65650 6.82346 6.98124 7.16423 7.28386 7.36651
7.73034 7.85279 7.93428 8.93833 9.61927 10.66153
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.024801 B = 0.001834 C = 0.001806
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1128.693995 B =15259.613098 C =15498.332470
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.859 5.859
2 C 0.040 3.960
3 Si 0.943 3.057
4 H -0.269 1.269
5 H -0.277 1.277
6 H -0.269 1.269
7 C -0.394 4.394
8 H 0.093 0.907
9 O -0.172 6.172
10 C 0.163 3.837
11 C -0.238 4.238
12 C -0.045 4.045
13 C -0.204 4.204
14 C 0.129 3.871
15 O -0.351 6.351
16 C 0.458 3.542
17 O -0.521 6.521
18 C -0.113 4.113
19 C -0.117 4.117
20 C 0.079 3.921
21 H 0.084 0.916
22 C -0.152 4.152
23 C -0.158 4.158
24 C 0.049 3.951
25 O -0.377 6.377
26 C -0.049 4.049
27 C -0.196 4.196
28 H 0.272 0.728
29 H 0.130 0.870
30 H 0.108 0.892
31 H 0.069 0.931
32 H 0.069 0.931
33 H 0.104 0.896
34 H 0.111 0.889
35 H 0.076 0.924
36 H 0.081 0.919
37 H 0.080 0.920
38 H 0.083 0.917
39 H 0.078 0.922
40 H 0.082 0.918
41 H 0.085 0.915
42 H 0.060 0.940
43 H 0.113 0.887
44 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.309 -20.985 10.224 27.380
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.493 5.493
2 C -0.165 4.165
3 Si 0.767 3.233
4 H -0.194 1.194
5 H -0.202 1.202
6 H -0.194 1.194
7 C -0.470 4.470
8 H 0.111 0.889
9 O -0.074 6.074
10 C 0.108 3.892
11 C -0.257 4.257
12 C -0.064 4.064
13 C -0.205 4.205
14 C 0.057 3.943
15 O -0.268 6.268
16 C 0.302 3.698
17 O -0.410 6.410
18 C -0.150 4.150
19 C -0.155 4.155
20 C 0.022 3.978
21 H 0.102 0.898
22 C -0.189 4.189
23 C -0.195 4.195
24 C -0.027 4.027
25 O -0.296 6.296
26 C -0.067 4.067
27 C -0.215 4.215
28 H 0.082 0.918
29 H 0.147 0.853
30 H 0.127 0.873
31 H 0.087 0.913
32 H 0.087 0.913
33 H 0.122 0.878
34 H 0.129 0.871
35 H 0.095 0.905
36 H 0.100 0.900
37 H 0.099 0.901
38 H 0.102 0.898
39 H 0.097 0.903
40 H 0.101 0.899
41 H 0.103 0.897
42 H 0.078 0.922
43 H 0.131 0.869
44 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 13.778 -20.786 9.921 26.838
hybrid contribution 0.686 0.659 -0.204 0.973
sum 14.464 -20.127 9.717 26.621
Atomic orbital electron populations
1.70031 1.06004 1.27976 1.45308 1.25323 0.95872 0.98935 0.96327
0.85755 0.78714 0.79574 0.79258 1.19435 1.20209 1.19409 1.21320
0.91874 0.80726 1.53068 0.88937 1.83975 1.34508 1.11545 1.77413
1.19437 0.90319 0.88042 0.91405 1.21138 0.93783 0.98852 1.11946
1.20614 0.98403 0.91527 0.95815 1.18878 0.93368 0.92907 1.15347
1.21688 0.98862 0.95803 0.77984 1.86667 1.65387 1.42842 1.31866
1.23776 0.74862 0.78515 0.92678 1.90632 1.50718 1.50650 1.49030
1.21358 1.03663 0.99440 0.90569 1.21825 1.00925 0.96935 0.95775
1.22798 0.85282 0.97564 0.92204 0.89807 1.23203 1.00104 0.96438
0.99177 1.23294 0.95952 1.01308 0.98958 1.23378 0.95858 0.83774
0.99734 1.88457 1.38569 1.28363 1.74230 1.20512 0.92629 0.96990
0.96590 1.20198 0.99706 0.90141 1.11446 0.91825 0.85269 0.87349
0.91315 0.91270 0.87823 0.87070 0.90491 0.90002 0.90125 0.89826
0.90333 0.89927 0.89717 0.92186 0.86888 0.86193
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16
2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16
3 Si 0.94 20.22 29.55 -169.99 -5.02 15.19 16
4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16
5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16
6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16
7 C -0.39 -10.87 9.49 30.89 0.29 -10.57 16
8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16
9 O -0.17 -4.86 9.76 0.07 0.00 -4.86 16
10 C 0.16 3.91 6.65 -39.10 -0.26 3.65 16
11 C -0.24 -5.14 9.17 -39.40 -0.36 -5.50 16
12 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16
13 C -0.20 -3.63 5.52 -104.57 -0.58 -4.21 16
14 C 0.13 1.99 5.59 36.01 0.20 2.19 16
15 O -0.35 -5.38 10.20 -39.24 -0.40 -5.78 16
16 C 0.46 6.18 7.96 36.01 0.29 6.47 16
17 O -0.52 -8.10 15.73 -18.75 -0.29 -8.39 16
18 C -0.11 -1.11 5.72 -27.88 -0.16 -1.26 16
19 C -0.12 -1.00 4.07 -26.73 -0.11 -1.11 16
20 C 0.08 0.58 3.51 -26.01 -0.09 0.49 16
21 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
22 C -0.15 -0.83 6.56 -24.71 -0.16 -0.99 16
23 C -0.16 -0.77 7.16 -24.41 -0.17 -0.95 16
24 C 0.05 0.32 7.78 38.18 0.30 0.62 16
25 O -0.38 -3.45 10.64 -35.23 -0.37 -3.82 16
26 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16
27 C -0.20 -4.13 9.99 -39.40 -0.39 -4.52 16
28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16
29 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16
30 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16
31 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16
32 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16
33 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16
34 H 0.11 1.08 7.89 -51.93 -0.41 0.67 16
35 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16
36 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16
37 H 0.08 0.44 7.85 -51.93 -0.41 0.03 16
38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
39 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16
40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16
41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
43 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16
44 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16
LS Contribution 373.32 15.07 5.63 5.63
Total: -1.00 -32.15 373.32 -8.21 -40.36
By element:
Atomic # 1 Polarization: 9.42 SS G_CDS: -6.43 Total: 2.99 kcal
Atomic # 6 Polarization: -15.13 SS G_CDS: -2.08 Total: -17.21 kcal
Atomic # 7 Polarization: -24.87 SS G_CDS: 0.76 Total: -24.11 kcal
Atomic # 8 Polarization: -21.78 SS G_CDS: -1.07 Total: -22.85 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -32.15 -8.21 -40.36 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000733438839.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.251 kcal
(2) G-P(sol) polarization free energy of solvation -32.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) -148.611 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds