Wall clock time and date at job start Tue Mar 31 2020 12:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86793 * 119.99800 * 2 1 4 4 H 1.48498 * 109.47564 * 240.00232 * 3 2 1 5 5 H 1.48507 * 109.47389 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47030 * 120.00279 * 3 2 1 7 7 C 1.38653 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99832 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00173 * 185.05760 * 9 7 2 11 11 C 1.38883 * 120.06737 * 354.46000 * 10 9 7 12 12 C 1.38104 * 119.93211 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06771 * 0.02802 * 12 11 10 14 14 C 1.50696 * 119.92969 * 179.97438 * 13 12 11 15 15 O 1.45202 * 109.46914 * 89.99785 * 14 13 12 16 16 C 1.34231 * 116.99658 * 179.97438 * 15 14 13 17 17 O 1.20823 * 120.00163 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99734 * 179.72388 * 16 15 14 19 19 C 1.53001 * 109.47197 * 180.27737 * 18 16 15 20 20 O 1.42898 * 110.01326 * 64.30280 * 19 18 16 21 21 C 1.54264 * 110.03028 * 302.91003 * 19 18 16 22 22 C 1.54962 * 104.15585 * 217.13225 * 21 19 18 23 23 C 1.54886 * 102.78214 * 37.89453 * 22 21 19 24 24 C 1.53877 * 110.03258 * 185.69116 * 19 18 16 25 25 C 1.38298 * 120.13817 * 0.24751 * 13 12 11 26 26 C 1.38104 * 120.06788 * 359.45302 * 25 13 12 27 27 H 0.96998 * 119.99673 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.03650 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.96049 * 180.02562 * 12 11 10 30 30 H 1.08998 * 109.47158 * 330.00395 * 14 13 12 31 31 H 1.09003 * 109.47485 * 209.99888 * 14 13 12 32 32 H 1.09002 * 109.47612 * 300.28451 * 18 16 15 33 33 H 1.09010 * 109.46866 * 60.27947 * 18 16 15 34 34 H 0.96700 * 114.00411 * 300.70074 * 20 19 18 35 35 H 1.08991 * 110.49259 * 335.78394 * 21 19 18 36 36 H 1.09007 * 110.48244 * 98.43302 * 21 19 18 37 37 H 1.09000 * 110.72785 * 279.57536 * 22 21 19 38 38 H 1.09011 * 110.76255 * 156.22914 * 22 21 19 39 39 H 1.09001 * 110.48894 * 203.40290 * 23 22 21 40 40 H 1.08998 * 110.48747 * 80.75484 * 23 22 21 41 41 H 1.08997 * 110.03601 * 238.57094 * 24 19 18 42 42 H 1.08999 * 110.03137 * 0.02562 * 24 19 18 43 43 H 1.08001 * 119.96121 * 179.70433 * 25 13 12 44 44 H 1.07999 * 120.03117 * 180.27340 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3684 -0.0016 10 6 2.0699 -3.5046 0.1046 11 6 3.4572 -3.4395 0.0921 12 6 4.2024 -4.5973 0.1997 13 6 3.5686 -5.8207 0.3193 14 6 4.3848 -7.0821 0.4359 15 8 4.6530 -7.3572 1.8362 16 6 5.3741 -8.4547 2.1143 17 8 5.7684 -9.1617 1.2175 18 6 5.6976 -8.8011 3.5448 19 6 6.5289 -10.0850 3.5832 20 8 7.7887 -9.8711 2.9436 21 6 5.7675 -11.2287 2.8818 22 6 6.1025 -12.4824 3.7287 23 6 6.1087 -11.9274 5.1747 24 6 6.7462 -10.5290 5.0404 25 6 2.1873 -5.8894 0.3263 26 6 1.4366 -4.7346 0.2252 27 1 -0.4849 0.8401 0.0004 28 1 3.9527 -2.4845 -0.0017 29 1 5.2812 -4.5471 0.1905 30 1 5.3274 -6.9555 -0.0964 31 1 3.8312 -7.9146 0.0017 32 1 6.2648 -7.9873 3.9966 33 1 4.7718 -8.9510 4.1006 34 1 7.7190 -9.5993 2.0182 35 1 4.6948 -11.0362 2.8933 36 1 6.1230 -11.3524 1.8587 37 1 7.0830 -12.8772 3.4623 38 1 5.3328 -13.2452 3.6111 39 1 6.7127 -12.5612 5.8241 40 1 5.0911 -11.8476 5.5571 41 1 7.8126 -10.5822 5.2595 42 1 6.2590 -9.8300 5.7202 43 1 1.6953 -6.8467 0.4150 44 1 0.3580 -4.7886 0.2352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740981650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:01 Heat of formation + Delta-G solvation = -171.932599 kcal Electronic energy + Delta-G solvation = -25962.896638 eV Core-core repulsion = 22037.658126 eV Total energy + Delta-G solvation = -3925.238512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87905 -40.84365 -39.87948 -38.48569 -37.25211 -35.75676 -34.37940 -32.58682 -31.89565 -31.63820 -29.70145 -27.95770 -27.17257 -26.06384 -23.70612 -22.54535 -22.05171 -21.83949 -20.72394 -19.91375 -18.94095 -18.66979 -17.97455 -17.61686 -17.19403 -16.52903 -16.38905 -16.27311 -16.14653 -15.65945 -15.57554 -15.18531 -14.81646 -14.46906 -14.40671 -14.15030 -13.94337 -13.67264 -13.53321 -13.43852 -13.04217 -12.98837 -12.62017 -12.45726 -12.43870 -12.25010 -12.15812 -12.11185 -11.99780 -11.74017 -11.59517 -11.46490 -11.29851 -11.22029 -10.90468 -10.81460 -9.85708 -9.07347 -8.49750 -6.18358 0.42345 0.53930 1.14155 1.35448 1.44703 1.51484 1.80985 2.16500 2.80422 3.12111 3.20341 3.44331 3.46964 3.61660 3.77676 3.82683 3.90568 3.95349 4.13464 4.23174 4.28086 4.30197 4.41048 4.51098 4.53236 4.54180 4.67668 4.72594 4.80596 4.85526 4.97508 4.99801 5.05720 5.10682 5.13314 5.20893 5.21249 5.33530 5.43724 5.47488 5.53656 5.64575 5.67143 5.98958 6.10639 6.63995 6.76776 6.94508 7.72267 8.72591 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.029122 B = 0.002044 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.247456 B =13693.317581 C =13925.430883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.226 6.226 10 C 0.125 3.875 11 C -0.246 4.246 12 C -0.044 4.044 13 C -0.183 4.183 14 C 0.131 3.869 15 O -0.359 6.359 16 C 0.462 3.538 17 O -0.531 6.531 18 C -0.141 4.141 19 C 0.138 3.862 20 O -0.573 6.573 21 C -0.144 4.144 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.041 4.041 26 C -0.206 4.206 27 H 0.274 0.726 28 H 0.124 0.876 29 H 0.141 0.859 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.381 0.619 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.150 0.850 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.148 -21.205 8.994 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.121 0.879 9 O -0.132 6.132 10 C 0.074 3.926 11 C -0.265 4.265 12 C -0.062 4.062 13 C -0.184 4.184 14 C 0.058 3.942 15 O -0.276 6.276 16 C 0.308 3.692 17 O -0.422 6.422 18 C -0.179 4.179 19 C 0.098 3.902 20 O -0.382 6.382 21 C -0.182 4.182 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.059 4.059 26 C -0.225 4.225 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.155 0.845 34 H 0.232 0.768 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.168 0.832 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.046 -21.364 9.254 26.688 hybrid contribution -0.273 1.262 -1.075 1.680 sum 12.773 -20.102 8.179 25.182 Atomic orbital electron populations 1.70176 1.08015 1.29012 1.48275 1.26612 0.96868 1.02794 0.95669 0.84643 0.77406 0.74191 0.79974 1.18115 1.19655 1.18130 1.21809 0.92617 0.81301 1.53477 0.87881 1.83948 1.36021 1.12633 1.80567 1.20003 0.91630 0.88028 0.92971 1.21256 0.93082 1.00036 1.12127 1.20966 0.99968 0.90739 0.94519 1.19274 0.93535 0.93824 1.11728 1.21655 0.99355 0.94686 0.78484 1.86642 1.66018 1.43473 1.31463 1.24195 0.73987 0.77633 0.93434 1.90599 1.51364 1.50642 1.49575 1.22474 1.04688 1.01062 0.89644 1.21835 0.82781 0.91255 0.94348 1.86463 1.30233 1.91012 1.30472 1.23060 1.00117 0.95436 0.99547 1.22518 1.01579 0.96940 0.95237 1.22390 1.01730 0.95099 0.96639 1.22213 1.02578 0.98085 0.92154 1.20904 0.92949 0.97309 0.94771 1.20457 1.00238 0.90285 1.11545 0.91719 0.85836 0.84129 0.89902 0.89645 0.85783 0.84505 0.76803 0.91164 0.91692 0.92041 0.90644 0.90396 0.90086 0.90785 0.88649 0.83226 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.39 13.67 21.61 0.30 -55.09 16 2 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 3 Si 1.02 41.94 29.55 68.60 2.03 43.97 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.42 -23.74 9.49 67.92 0.64 -23.10 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 9 O -0.23 -13.32 9.76 -22.68 -0.22 -13.54 16 10 C 0.12 6.07 6.65 22.58 0.15 6.22 16 11 C -0.25 -10.41 9.17 22.39 0.21 -10.20 16 12 C -0.04 -1.48 9.69 22.25 0.22 -1.26 16 13 C -0.18 -5.63 5.52 -19.84 -0.11 -5.74 16 14 C 0.13 3.21 5.59 71.23 0.40 3.60 16 15 O -0.36 -8.72 10.20 -51.43 -0.52 -9.25 16 16 C 0.46 9.58 7.43 71.24 0.53 10.11 16 17 O -0.53 -12.52 12.26 27.11 0.33 -12.19 16 18 C -0.14 -2.06 4.74 29.85 0.14 -1.92 16 19 C 0.14 2.19 0.98 -10.07 -0.01 2.18 16 20 O -0.57 -11.63 12.89 -134.90 -1.74 -13.37 16 21 C -0.14 -2.34 4.65 31.69 0.15 -2.19 16 22 C -0.13 -1.65 6.91 31.91 0.22 -1.43 16 23 C -0.12 -1.24 6.83 31.67 0.22 -1.03 16 24 C -0.11 -1.37 6.27 31.32 0.20 -1.17 16 25 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 26 C -0.21 -8.49 9.99 22.39 0.22 -8.26 16 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 29 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 31 H 0.09 1.89 8.07 -2.39 -0.02 1.87 16 32 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.38 7.58 6.97 -74.06 -0.52 7.07 16 35 H 0.07 1.10 7.78 -2.39 -0.02 1.08 16 36 H 0.06 1.30 7.18 -2.38 -0.02 1.29 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 1.03 7.95 -2.39 -0.02 1.01 16 42 H 0.10 0.80 7.67 -2.39 -0.02 0.79 16 43 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 44 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -70.31 364.64 4.52 -65.79 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.50 Total: 29.72 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.85 Total: -36.04 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.30 Total: -55.09 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -2.15 Total: -48.35 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.31 4.52 -65.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740981650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.143 kcal (2) G-P(sol) polarization free energy of solvation -70.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds