Wall clock time and date at job start Tue Mar 31 2020 12:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86791 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47328 * 240.00016 * 3 2 1 5 5 H 1.48506 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47524 * 119.99900 * 3 2 1 7 7 C 1.38654 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00203 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99770 * 185.05576 * 9 7 2 11 11 C 1.38902 * 120.07174 * 354.45791 * 10 9 7 12 12 C 1.38072 * 119.93310 * 180.02562 * 11 10 9 13 13 C 1.38326 * 120.07169 * 0.02562 * 12 11 10 14 14 C 1.38278 * 120.13550 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.96624 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46522 * 89.99864 * 15 14 13 17 17 O 1.20823 * 120.00431 * 0.02562 * 16 15 14 18 18 O 1.34238 * 119.99857 * 179.97438 * 16 15 14 19 19 C 1.45195 * 117.00234 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47187 * 180.02562 * 19 18 16 21 21 C 1.53006 * 109.47166 * 180.02562 * 20 19 18 22 22 H 1.09002 * 110.27569 * 55.63471 * 21 20 19 23 23 C 1.54947 * 110.30928 * 177.83386 * 21 20 19 24 24 C 1.55303 * 100.94191 * 155.36102 * 23 21 20 25 25 C 1.54385 * 102.25183 * 325.86229 * 24 23 21 26 26 O 1.43237 * 107.58950 * 21.35922 * 25 24 23 27 27 C 1.38122 * 120.06865 * 0.25248 * 14 13 12 28 28 H 0.97003 * 119.99818 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.03047 * 0.03037 * 11 10 9 30 30 H 1.08005 * 119.96567 * 180.02562 * 12 11 10 31 31 H 1.07997 * 119.92921 * 180.02562 * 13 12 11 32 32 H 1.09002 * 109.47158 * 330.00450 * 15 14 13 33 33 H 1.08991 * 109.47280 * 209.99690 * 15 14 13 34 34 H 1.09006 * 109.47174 * 300.00135 * 19 18 16 35 35 H 1.08997 * 109.47117 * 59.99903 * 19 18 16 36 36 H 1.08995 * 109.47057 * 299.99640 * 20 19 18 37 37 H 1.09000 * 109.47118 * 60.00062 * 20 19 18 38 38 H 1.09003 * 111.12177 * 273.27928 * 23 21 20 39 39 H 1.08997 * 111.12458 * 37.43769 * 23 21 20 40 40 H 1.08997 * 110.84727 * 207.67781 * 24 23 21 41 41 H 1.08995 * 111.02384 * 84.13151 * 24 23 21 42 42 H 1.09004 * 109.83117 * 261.85033 * 25 24 23 43 43 H 1.09000 * 109.83041 * 140.87241 * 25 24 23 44 44 H 1.08006 * 120.03340 * 179.72544 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4572 -3.4396 0.0951 12 6 4.2022 -4.5970 0.2037 13 6 3.5683 -5.8205 0.3244 14 6 2.1873 -5.8887 0.3362 15 6 1.5007 -7.2238 0.4674 16 6 1.2772 -7.5325 1.9254 17 8 1.6381 -6.7487 2.7712 18 8 0.6764 -8.6779 2.2845 19 6 0.4937 -8.9089 3.7063 20 6 -0.2021 -10.2548 3.9190 21 6 -0.3952 -10.4979 5.4173 22 1 -0.9417 -9.6689 5.8671 23 6 -1.1476 -11.8318 5.6531 24 6 -0.6732 -12.1880 7.0883 25 6 0.7741 -11.6507 7.0979 26 8 0.8769 -10.6656 6.0632 27 6 1.4364 -4.7350 0.2222 28 1 -0.4850 0.8401 0.0004 29 1 3.9527 -2.4846 0.0005 30 1 5.2811 -4.5470 0.1944 31 1 4.1533 -6.7243 0.4097 32 1 2.1255 -7.9988 0.0235 33 1 0.5410 -7.1910 -0.0482 34 1 1.4652 -8.9204 4.2004 35 1 -0.1190 -8.1121 4.1280 36 1 -1.1736 -10.2437 3.4250 37 1 0.4109 -11.0514 3.4974 38 1 -2.2272 -11.6847 5.6213 39 1 -0.8351 -12.5910 4.9362 40 1 -0.6876 -13.2666 7.2451 41 1 -1.2803 -11.6807 7.8380 42 1 1.4721 -12.4651 6.9036 43 1 0.9935 -11.1965 8.0641 44 1 0.3577 -4.7894 0.2270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787759164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:04 Heat of formation + Delta-G solvation = -145.008344 kcal Electronic energy + Delta-G solvation = -25502.121453 eV Core-core repulsion = 21578.050464 eV Total energy + Delta-G solvation = -3924.070989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40212 -39.80548 -38.92286 -36.90156 -36.10591 -33.34329 -32.50915 -32.36592 -31.99274 -29.25860 -28.42270 -27.11805 -25.24425 -23.89511 -22.16367 -21.74088 -21.41360 -21.24430 -20.22820 -17.64485 -17.50643 -17.42065 -16.96431 -16.44758 -16.25620 -15.90728 -15.23247 -15.03739 -14.64589 -14.38221 -14.20377 -13.82326 -13.57294 -13.51589 -13.46153 -13.09469 -12.68089 -12.43179 -12.27283 -12.14525 -11.87271 -11.81311 -11.60720 -11.47846 -11.38655 -11.25440 -11.24735 -10.84011 -10.76177 -10.60948 -10.46822 -10.43273 -10.20244 -9.89004 -9.31748 -8.80121 -8.08218 -7.20068 -6.40631 -3.99718 2.00865 2.39897 2.46245 2.86963 3.15859 3.17946 3.19985 3.37747 4.00049 4.03040 4.25328 4.43378 4.57873 4.65839 4.71600 4.79667 4.89686 4.91167 5.05120 5.14619 5.19726 5.23805 5.24356 5.28811 5.34772 5.38632 5.48756 5.53652 5.60571 5.67531 5.74714 5.77030 5.82262 5.95145 6.18902 6.35331 6.54296 6.64136 6.69098 6.93105 7.09328 7.26244 7.38568 7.46015 7.83325 7.99161 8.04097 9.04891 9.75110 10.77489 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.002044 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.459633 B =13693.708925 C =14238.577059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.227 4.227 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.043 4.043 15 C -0.064 4.064 16 C 0.459 3.541 17 O -0.488 6.488 18 O -0.365 6.365 19 C 0.068 3.932 20 C -0.116 4.116 21 C 0.082 3.918 22 H 0.076 0.924 23 C -0.150 4.150 24 C -0.157 4.157 25 C 0.050 3.950 26 O -0.379 6.379 27 C -0.173 4.173 28 H 0.270 0.730 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -24.105 8.763 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.044 4.044 15 C -0.101 4.101 16 C 0.301 3.699 17 O -0.373 6.373 18 O -0.283 6.283 19 C -0.006 4.006 20 C -0.153 4.153 21 C 0.024 3.976 22 H 0.094 0.906 23 C -0.187 4.187 24 C -0.195 4.195 25 C -0.027 4.027 26 O -0.298 6.298 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.237 -23.534 8.987 25.221 hybrid contribution 0.362 0.766 0.351 0.917 sum -0.875 -22.768 9.338 24.624 Atomic orbital electron populations 1.70033 1.05936 1.27695 1.46227 1.25281 0.95853 0.98801 0.96618 0.85781 0.78682 0.79797 0.79160 1.19527 1.20312 1.19517 1.21270 0.91761 0.80834 1.52895 0.89144 1.83977 1.34227 1.11361 1.78645 1.19265 0.90272 0.87963 0.92478 1.21200 0.93827 0.99003 1.10645 1.20690 0.98466 0.92233 0.97888 1.20378 0.93199 0.97177 1.10624 1.18677 0.93360 0.91750 1.00595 1.20257 1.03571 0.97096 0.89192 1.23812 0.74461 0.78680 0.92969 1.90727 1.46199 1.47485 1.52907 1.86448 1.72689 1.40863 1.28330 1.22945 1.01847 0.97236 0.78543 1.21704 1.02200 0.96911 0.94535 1.22944 0.84766 0.97479 0.92388 0.90592 1.23287 1.01323 0.97230 0.96903 1.23126 0.96505 1.02378 0.97466 1.23124 0.96508 0.91508 0.91541 1.88470 1.31262 1.59990 1.50113 1.19964 0.99159 0.89903 1.10162 0.92029 0.85515 0.87323 0.87727 0.87221 0.87095 0.90568 0.91317 0.89394 0.89981 0.89579 0.89942 0.89929 0.90406 0.91269 0.91351 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.79 13.67 55.48 0.76 -25.04 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.39 -11.21 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 9 O -0.18 -5.24 9.76 0.04 0.00 -5.24 16 10 C 0.15 3.87 6.65 -39.10 -0.26 3.61 16 11 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 12 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.56 9.70 -39.53 -0.38 -3.94 16 14 C -0.04 -0.81 4.37 -104.65 -0.46 -1.27 16 15 C -0.06 -0.90 5.94 -29.04 -0.17 -1.07 16 16 C 0.46 7.32 7.95 36.01 0.29 7.60 16 17 O -0.49 -9.78 15.78 -18.75 -0.30 -10.07 16 18 O -0.37 -4.95 10.22 -39.28 -0.40 -5.35 16 19 C 0.07 0.82 5.38 37.16 0.20 1.02 16 20 C -0.12 -1.00 5.34 -26.73 -0.14 -1.14 16 21 C 0.08 0.66 3.43 -25.70 -0.09 0.57 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 C -0.15 -0.83 6.57 -24.48 -0.16 -0.99 16 24 C -0.16 -0.80 7.02 -24.78 -0.17 -0.97 16 25 C 0.05 0.35 7.79 37.88 0.30 0.65 16 26 O -0.38 -3.86 10.69 -35.23 -0.38 -4.24 16 27 C -0.17 -3.81 9.64 -39.39 -0.38 -4.19 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 30 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.11 1.21 8.08 -51.93 -0.42 0.79 16 33 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 34 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -34.63 373.68 -8.15 -42.78 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.45 Total: 2.99 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.00 Total: -17.40 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.76 Total: -25.04 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.07 Total: -24.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.63 -8.15 -42.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787759164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.226 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds