Wall clock time and date at job start Tue Mar 31 2020 12:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00105 * 2 1 4 4 H 1.48493 * 109.47409 * 270.00443 * 3 2 1 5 5 H 1.48497 * 109.47000 * 30.00589 * 3 2 1 6 6 H 1.48503 * 109.47285 * 149.99921 * 3 2 1 7 7 C 1.38709 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99971 * 359.97438 * 7 2 1 9 9 O 1.34811 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.35507 * 117.00182 * 185.05488 * 9 7 2 11 11 C 1.38835 * 120.16363 * 354.39294 * 10 9 7 12 12 C 1.38015 * 120.07756 * 180.02562 * 11 10 9 13 13 C 1.38587 * 120.41879 * 359.97438 * 12 11 10 14 14 C 1.37813 * 120.32666 * 359.74332 * 13 12 11 15 15 C 1.39728 * 119.91217 * 0.51114 * 14 13 12 16 16 C 1.47395 * 120.20056 * 179.77140 * 15 14 13 17 17 O 1.21513 * 119.99949 * 179.72064 * 16 15 14 18 18 O 1.34760 * 120.00353 * 359.44459 * 16 15 14 19 19 C 1.45191 * 117.00116 * 180.27932 * 18 16 15 20 20 C 1.52997 * 109.47183 * 180.02562 * 19 18 16 21 21 H 1.09010 * 109.46942 * 304.99678 * 20 19 18 22 22 C 1.52999 * 109.47479 * 64.99702 * 20 19 18 23 23 C 1.53003 * 109.47261 * 180.02562 * 22 20 19 24 24 C 1.52995 * 109.47000 * 299.99948 * 23 22 20 25 25 C 1.52999 * 109.47408 * 60.00109 * 24 23 22 26 26 H 1.08996 * 109.47095 * 60.00062 * 25 24 23 27 27 O 1.42898 * 109.47380 * 180.02562 * 25 24 23 28 28 C 1.53003 * 109.46951 * 299.99921 * 25 24 23 29 29 H 0.97002 * 120.00145 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.96026 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.79376 * 179.97438 * 12 11 10 32 32 H 1.07995 * 119.84293 * 179.97438 * 13 12 11 33 33 H 1.08000 * 120.04099 * 180.25821 * 14 13 12 34 34 H 1.08997 * 109.47434 * 299.99708 * 19 18 16 35 35 H 1.08999 * 109.47511 * 60.00168 * 19 18 16 36 36 H 1.09003 * 109.46745 * 299.99921 * 22 20 19 37 37 H 1.08996 * 109.47122 * 60.00102 * 22 20 19 38 38 H 1.08996 * 109.47336 * 59.99783 * 23 22 20 39 39 H 1.09000 * 109.47076 * 179.97438 * 23 22 20 40 40 H 1.08997 * 109.47305 * 180.02562 * 24 23 22 41 41 H 1.09010 * 109.46928 * 300.00170 * 24 23 22 42 42 H 0.96704 * 114.00106 * 300.00162 * 27 25 24 43 43 H 1.08996 * 109.47336 * 299.99994 * 28 25 24 44 44 H 1.08995 * 109.46826 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0087 -1.2012 -0.0005 8 1 1.4687 -2.1365 -0.0005 9 8 3.3568 -1.2012 -0.0011 10 6 3.9720 -2.4038 -0.1079 11 6 3.2243 -3.5736 -0.0936 12 6 3.8528 -4.7976 -0.2021 13 6 5.2312 -4.8700 -0.3264 14 6 5.9893 -3.7194 -0.3483 15 6 5.3678 -2.4731 -0.2341 16 6 6.1730 -1.2387 -0.2518 17 8 5.6282 -0.1566 -0.1573 18 8 7.5137 -1.3102 -0.3671 19 6 8.2429 -0.0547 -0.3712 20 6 9.7406 -0.3352 -0.5097 21 1 10.0566 -1.0188 0.2784 22 6 10.0168 -0.9682 -1.8750 23 6 11.5145 -1.2492 -2.0132 24 6 12.2927 0.0624 -1.8923 25 6 12.0166 0.6955 -0.5271 26 1 12.3322 0.0118 0.2609 27 8 12.7430 1.9209 -0.4144 28 6 10.5189 0.9765 -0.3889 29 1 -0.4850 0.8400 0.0004 30 1 2.1497 -3.5257 0.0033 31 1 3.2668 -5.7047 -0.1900 32 1 5.7134 -5.8327 -0.4102 33 1 7.0628 -3.7810 -0.4496 34 1 7.9091 0.5566 -1.2096 35 1 8.0572 0.4764 0.5624 36 1 9.4627 -1.9029 -1.9608 37 1 9.7008 -0.2846 -2.6630 38 1 11.8301 -1.9329 -1.2252 39 1 11.7112 -1.7006 -2.9856 40 1 13.3596 -0.1377 -1.9912 41 1 11.9770 0.7462 -2.6804 42 1 13.7014 1.8186 -0.4929 43 1 10.2033 1.6602 -1.1769 44 1 10.3221 1.4271 0.5839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795353327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:08 Heat of formation + Delta-G solvation = -177.774903 kcal Electronic energy + Delta-G solvation = -26803.007733 eV Core-core repulsion = 22877.515879 eV Total energy + Delta-G solvation = -3925.491853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69694 -40.67498 -39.91427 -38.27509 -37.55613 -36.44126 -34.57276 -33.03722 -32.18736 -30.86783 -30.54176 -27.65687 -27.12930 -25.00473 -23.41288 -23.20205 -22.40207 -21.87263 -20.86160 -19.90906 -19.39778 -18.44388 -18.12105 -17.56906 -17.38594 -16.61494 -16.38155 -15.97361 -15.82729 -15.60954 -15.48584 -15.42488 -15.11963 -14.86094 -14.37852 -14.12872 -14.06466 -14.01921 -13.60960 -13.35794 -13.18781 -13.04801 -12.87327 -12.63576 -12.44433 -12.33537 -12.11291 -12.06707 -11.78973 -11.69012 -11.52562 -11.49620 -11.24639 -11.10472 -11.00929 -10.68030 -9.98106 -9.23211 -8.62117 -6.31547 -0.12198 0.61106 1.22281 1.26839 1.53346 1.62131 1.66616 2.24761 2.70171 2.91315 3.07997 3.20141 3.55282 3.63406 3.88029 3.97198 4.03269 4.05834 4.15717 4.21588 4.22520 4.34759 4.41239 4.45202 4.49048 4.52533 4.58421 4.63004 4.69018 4.78831 5.01818 5.05681 5.10793 5.15221 5.16394 5.24532 5.25989 5.33833 5.36902 5.47561 5.50449 5.58364 5.67865 5.79803 6.10649 6.73345 6.88694 6.91268 7.49811 8.48000 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.003359 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.113273 B = 8334.763277 C =10036.193851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.029 3.971 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.404 4.404 8 H 0.097 0.903 9 O -0.210 6.210 10 C 0.169 3.831 11 C -0.251 4.251 12 C -0.029 4.029 13 C -0.192 4.192 14 C -0.010 4.010 15 C -0.226 4.226 16 C 0.505 3.495 17 O -0.539 6.539 18 O -0.343 6.343 19 C 0.067 3.933 20 C -0.067 4.067 21 H 0.097 0.903 22 C -0.118 4.118 23 C -0.111 4.111 24 C -0.148 4.148 25 C 0.110 3.890 26 H 0.070 0.930 27 O -0.589 6.589 28 C -0.109 4.109 29 H 0.287 0.713 30 H 0.122 0.878 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.396 0.604 43 H 0.061 0.939 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.557 -7.240 -2.762 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.480 4.480 8 H 0.114 0.886 9 O -0.114 6.114 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.047 4.047 13 C -0.211 4.211 14 C -0.028 4.028 15 C -0.228 4.228 16 C 0.353 3.647 17 O -0.430 6.430 18 O -0.260 6.260 19 C -0.007 4.007 20 C -0.086 4.086 21 H 0.115 0.885 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.185 4.185 25 C 0.052 3.948 26 H 0.088 0.912 27 O -0.398 6.398 28 C -0.147 4.147 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.175 0.825 32 H 0.187 0.813 33 H 0.182 0.818 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.246 0.754 43 H 0.080 0.920 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 25.710 -6.280 -2.639 26.597 hybrid contribution -0.285 1.111 -0.027 1.148 sum 25.425 -5.169 -2.666 26.082 Atomic orbital electron populations 1.69665 1.06383 1.29707 1.48830 1.25024 0.95618 1.01340 0.95199 0.85484 0.79136 0.78750 0.79144 1.20043 1.18782 1.19149 1.20919 0.78008 0.96520 1.52559 0.88556 1.83738 1.21288 1.26996 1.79354 1.19692 0.91392 0.86047 0.91305 1.21319 1.00786 0.92529 1.12340 1.21548 0.95733 0.96422 0.90991 1.21293 0.93121 0.99286 1.07353 1.21456 1.01166 0.89085 0.91092 1.18470 0.88946 0.92909 1.22495 1.21294 0.81232 0.89445 0.72741 1.90906 1.73045 1.31668 1.47393 1.86458 1.18737 1.36615 1.84220 1.23189 0.92185 0.83529 1.01778 1.21025 0.89341 0.97794 1.00434 0.88496 1.21636 0.97690 1.01127 0.95132 1.21453 0.93216 0.96955 1.03206 1.22256 1.01552 0.97463 0.97275 1.21711 0.90765 0.85414 0.96940 0.91184 1.86477 1.24443 1.32722 1.96121 1.21417 0.94194 0.96411 1.02678 0.90289 0.86022 0.82484 0.81296 0.81801 0.92469 0.92243 0.90969 0.92680 0.90479 0.90498 0.89644 0.92230 0.75406 0.91991 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.70 13.96 21.62 0.30 -54.39 16 2 C 0.03 1.75 5.49 84.85 0.47 2.22 16 3 Si 0.95 50.08 28.62 68.60 1.96 52.04 16 4 H -0.27 -14.28 7.11 99.48 0.71 -13.57 16 5 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -15.08 7.11 99.48 0.71 -14.37 16 7 C -0.40 -24.29 9.95 67.93 0.68 -23.62 16 8 H 0.10 5.80 5.44 -2.91 -0.02 5.79 16 9 O -0.21 -12.08 6.67 1.02 0.01 -12.07 16 10 C 0.17 8.10 6.66 22.92 0.15 8.26 16 11 C -0.25 -10.37 9.16 22.36 0.20 -10.17 16 12 C -0.03 -0.85 10.03 22.30 0.22 -0.63 16 13 C -0.19 -4.77 10.02 22.25 0.22 -4.55 16 14 C -0.01 -0.29 9.61 22.53 0.22 -0.08 16 15 C -0.23 -9.16 5.89 -20.00 -0.12 -9.28 16 16 C 0.51 21.31 7.89 70.23 0.55 21.87 16 17 O -0.54 -27.78 14.96 26.79 0.40 -27.38 16 18 O -0.34 -11.08 9.01 -56.71 -0.51 -11.59 16 19 C 0.07 1.89 4.85 71.98 0.35 2.24 16 20 C -0.07 -1.30 2.43 -10.79 -0.03 -1.33 16 21 H 0.10 1.65 8.14 -2.38 -0.02 1.64 16 22 C -0.12 -2.02 5.10 30.60 0.16 -1.86 16 23 C -0.11 -1.29 5.92 30.59 0.18 -1.11 16 24 C -0.15 -1.69 5.54 30.59 0.17 -1.52 16 25 C 0.11 1.56 3.47 30.59 0.11 1.67 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 O -0.59 -9.21 13.32 -148.98 -1.98 -11.19 16 28 C -0.11 -2.05 4.85 30.60 0.15 -1.90 16 29 H 0.29 15.95 8.31 -92.71 -0.77 15.18 16 30 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 31 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.16 3.57 7.61 -2.91 -0.02 3.55 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.30 7.82 -2.39 -0.02 1.29 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.40 2.48 9.08 -74.05 -0.67 1.81 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -77.07 364.30 4.20 -72.86 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.34 Total: 11.53 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.68 Total: -19.80 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.30 Total: -54.39 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -2.09 Total: -62.23 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 1.96 Total: 52.04 kcal Total: -77.07 4.20 -72.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795353327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.913 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds