Wall clock time and date at job start Tue Mar 31 2020 12:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86797 * 119.99714 * 2 1 4 4 H 1.48497 * 109.47170 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.47411 * 30.00710 * 3 2 1 6 6 H 1.48503 * 109.46601 * 150.00151 * 3 2 1 7 7 C 1.38704 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99206 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.35501 * 117.00154 * 185.06377 * 9 7 2 11 11 C 1.38836 * 120.16548 * 354.39973 * 10 9 7 12 12 C 1.38025 * 120.07943 * 180.29611 * 11 10 9 13 13 C 1.38598 * 120.41080 * 359.68408 * 12 11 10 14 14 C 1.37803 * 120.33095 * 359.97438 * 13 12 11 15 15 C 1.39733 * 119.91453 * 0.02562 * 14 13 12 16 16 C 1.47400 * 120.20149 * 180.02562 * 15 14 13 17 17 O 1.21513 * 119.99824 * 180.02562 * 16 15 14 18 18 O 1.34760 * 120.00009 * 359.72817 * 16 15 14 19 19 C 1.45196 * 116.99778 * 180.27492 * 18 16 15 20 20 C 1.53005 * 109.47076 * 180.02562 * 19 18 16 21 21 H 1.09002 * 109.46730 * 305.00268 * 20 19 18 22 22 C 1.52998 * 109.47192 * 64.99742 * 20 19 18 23 23 C 1.52997 * 109.47290 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47253 * 300.00060 * 23 22 20 25 25 C 1.53006 * 109.46941 * 59.99961 * 24 23 22 26 26 H 1.08997 * 109.47178 * 180.02562 * 25 24 23 27 27 O 1.42894 * 109.47230 * 59.99936 * 25 24 23 28 28 C 1.52989 * 109.47285 * 184.99905 * 20 19 18 29 29 H 0.96998 * 119.99565 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.96265 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.79675 * 179.69660 * 12 11 10 32 32 H 1.07995 * 119.82973 * 180.02562 * 13 12 11 33 33 H 1.08000 * 120.04459 * 180.02562 * 14 13 12 34 34 H 1.09003 * 109.47236 * 299.99420 * 19 18 16 35 35 H 1.09001 * 109.47431 * 60.00109 * 19 18 16 36 36 H 1.09005 * 109.47093 * 300.00217 * 22 20 19 37 37 H 1.08995 * 109.47264 * 60.00076 * 22 20 19 38 38 H 1.08998 * 109.47167 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.47314 * 60.00101 * 23 22 20 40 40 H 1.09001 * 109.46994 * 300.00238 * 24 23 22 41 41 H 1.08997 * 109.47362 * 179.97438 * 24 23 22 42 42 H 0.96700 * 113.99920 * 60.00072 * 27 25 24 43 43 H 1.09002 * 109.47533 * 299.99872 * 28 20 19 44 44 H 1.09004 * 109.47259 * 59.99576 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3347 -2.3687 -0.0005 10 6 2.0686 -3.5028 0.1055 11 6 3.4555 -3.4402 0.0910 12 6 4.2013 -4.5971 0.1930 13 6 3.5747 -5.8271 0.3169 14 6 2.1993 -5.9083 0.3402 15 6 1.4308 -4.7457 0.2380 16 6 -0.0408 -4.8251 0.2627 17 8 -0.7055 -3.8118 0.1731 18 8 -0.6492 -6.0219 0.3788 19 6 -2.1011 -6.0250 0.3902 20 6 -2.6071 -7.4623 0.5285 21 1 -2.1773 -8.0764 -0.2628 22 6 -2.1904 -8.0208 1.8906 23 6 -2.6958 -9.4583 2.0287 24 6 -4.2214 -9.4756 1.9154 25 6 -4.6381 -8.9171 0.5532 26 1 -5.7250 -8.9291 0.4727 27 8 -4.0743 -9.7219 -0.4842 28 6 -4.1327 -7.4791 0.4155 29 1 -0.4849 0.8401 0.0004 30 1 3.9513 -2.4856 -0.0054 31 1 5.2798 -4.5436 0.1763 32 1 4.1675 -6.7264 0.3965 33 1 1.7158 -6.8691 0.4374 34 1 -2.4591 -5.4317 1.2316 35 1 -2.4727 -5.5966 -0.5407 36 1 -1.1034 -8.0088 1.9711 37 1 -2.6201 -7.4067 2.6820 38 1 -2.3993 -9.8560 2.9993 39 1 -2.2657 -10.0722 1.2373 40 1 -4.6515 -8.8617 2.7068 41 1 -4.5814 -10.4998 2.0134 42 1 -4.3518 -10.6479 -0.4585 43 1 -4.5625 -6.8649 1.2068 44 1 -4.4296 -7.0811 -0.5549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795353331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:11 Heat of formation + Delta-G solvation = -155.247562 kcal Electronic energy + Delta-G solvation = -26844.073147 eV Core-core repulsion = 22919.558153 eV Total energy + Delta-G solvation = -3924.514995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93136 -39.34527 -38.49619 -36.41153 -35.92968 -34.92286 -32.39887 -31.90868 -30.59706 -29.95893 -28.95638 -26.21710 -25.40650 -23.35430 -22.64317 -21.69515 -21.22145 -20.13728 -19.83865 -18.05843 -17.49286 -16.97130 -16.54354 -16.05031 -15.84342 -15.38663 -14.80430 -14.67066 -14.44964 -14.28200 -13.93008 -13.88346 -13.58932 -13.44871 -12.94173 -12.65358 -12.54511 -12.35981 -12.20732 -12.09663 -11.75103 -11.58342 -11.35315 -11.14842 -11.08113 -10.93356 -10.87944 -10.78660 -10.56104 -10.48339 -10.23825 -9.96731 -9.80385 -9.71315 -9.20587 -8.92294 -8.30782 -7.36656 -6.50023 -4.09924 1.62915 2.32084 3.09299 3.10598 3.15277 3.32147 3.50668 3.89610 4.03229 4.50295 4.53556 4.57336 4.70888 4.94474 5.02731 5.07976 5.14953 5.16574 5.28003 5.34802 5.38603 5.53386 5.58146 5.62358 5.65702 5.71752 5.76574 5.84606 5.84726 5.98969 6.05688 6.11001 6.14033 6.14826 6.32099 6.44716 6.59356 6.67174 6.91199 7.03831 7.14359 7.24511 7.33546 7.44251 7.67200 7.88475 8.78409 8.90242 9.59806 10.63754 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.003024 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.005439 B = 9257.361283 C =10546.346234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.403 4.403 8 H 0.096 0.904 9 O -0.126 6.126 10 C 0.191 3.809 11 C -0.240 4.240 12 C -0.044 4.044 13 C -0.235 4.235 14 C -0.015 4.015 15 C -0.215 4.215 16 C 0.497 3.503 17 O -0.478 6.478 18 O -0.364 6.364 19 C 0.073 3.927 20 C -0.079 4.079 21 H 0.089 0.911 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.153 4.153 25 C 0.108 3.892 26 H 0.054 0.946 27 O -0.561 6.561 28 C -0.107 4.107 29 H 0.272 0.728 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.373 0.627 43 H 0.078 0.922 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -17.273 3.020 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.479 4.479 8 H 0.113 0.887 9 O -0.024 6.024 10 C 0.132 3.868 11 C -0.259 4.259 12 C -0.063 4.063 13 C -0.254 4.254 14 C -0.034 4.034 15 C -0.218 4.218 16 C 0.342 3.658 17 O -0.365 6.365 18 O -0.283 6.283 19 C -0.001 4.001 20 C -0.098 4.098 21 H 0.107 0.893 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.191 4.191 25 C 0.049 3.951 26 H 0.072 0.928 27 O -0.366 6.366 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.220 0.780 43 H 0.097 0.903 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.413 -16.118 2.815 17.234 hybrid contribution 0.090 0.392 0.192 0.446 sum -5.322 -15.726 3.007 16.873 Atomic orbital electron populations 1.70126 1.06032 1.27883 1.42314 1.25418 0.95838 0.99045 0.96050 0.85694 0.78999 0.79775 0.78860 1.19675 1.20086 1.18985 1.21528 0.91994 0.80945 1.53405 0.88667 1.84144 1.33797 1.11147 1.73285 1.19238 0.90013 0.87022 0.90560 1.21109 0.93026 0.99459 1.12266 1.20964 0.98754 0.92292 0.94260 1.20539 0.94118 0.97187 1.13529 1.20964 0.93521 0.96238 0.92660 1.18057 0.88514 0.92516 1.22716 1.21086 0.89136 0.80978 0.74599 1.90996 1.65902 1.35258 1.44326 1.86486 1.21943 1.34487 1.85392 1.22922 0.78006 0.97012 1.02189 1.21058 0.94675 0.94794 0.99249 0.89255 1.21574 1.01812 0.95488 0.96298 1.21439 0.94598 0.97522 1.01607 1.22272 0.97667 1.01075 0.98067 1.21743 0.95655 0.91217 0.86471 0.92798 1.86568 1.73747 1.24030 1.52289 1.21534 0.95337 0.94563 1.03049 0.91758 0.84858 0.86989 0.87009 0.85768 0.91762 0.91673 0.90826 0.92206 0.92216 0.91306 0.91058 0.91996 0.78000 0.90315 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.91 13.67 55.48 0.76 -24.16 16 2 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 3 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.40 -11.35 9.49 30.90 0.29 -11.05 16 8 H 0.10 2.42 5.21 -52.49 -0.27 2.15 16 9 O -0.13 -3.71 7.84 -20.98 -0.16 -3.87 16 10 C 0.19 4.80 6.66 -38.58 -0.26 4.54 16 11 C -0.24 -5.15 9.16 -39.44 -0.36 -5.52 16 12 C -0.04 -0.79 10.03 -39.53 -0.40 -1.18 16 13 C -0.23 -3.99 10.02 -39.61 -0.40 -4.38 16 14 C -0.02 -0.29 9.61 -39.18 -0.38 -0.66 16 15 C -0.22 -4.91 5.89 -104.82 -0.62 -5.53 16 16 C 0.50 11.63 7.89 34.46 0.27 11.90 16 17 O -0.48 -13.23 14.96 -26.59 -0.40 -13.63 16 18 O -0.36 -6.96 9.01 -40.66 -0.37 -7.33 16 19 C 0.07 1.19 4.85 37.16 0.18 1.37 16 20 C -0.08 -1.00 2.29 -90.62 -0.21 -1.20 16 21 H 0.09 1.23 7.68 -51.93 -0.40 0.83 16 22 C -0.11 -1.31 5.10 -26.73 -0.14 -1.44 16 23 C -0.11 -1.04 5.78 -26.73 -0.15 -1.20 16 24 C -0.15 -1.17 5.64 -26.73 -0.15 -1.32 16 25 C 0.11 0.92 3.78 -26.70 -0.10 0.82 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 O -0.56 -5.18 11.97 -35.23 -0.42 -5.60 16 28 C -0.11 -1.12 4.95 -26.71 -0.13 -1.26 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.12 1.99 7.61 -52.49 -0.40 1.59 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.37 1.88 9.08 45.56 0.41 2.29 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -34.34 363.36 -8.32 -42.66 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.54 Total: 6.10 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.64 Total: -14.98 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.76 Total: -24.16 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.35 Total: -30.43 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.34 -8.32 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795353331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.590 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds