Wall clock time and date at job start Tue Mar 31 2020 12:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86797 * 119.99714 * 2 1 4 4 H 1.48497 * 109.47170 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.47411 * 30.00710 * 3 2 1 6 6 H 1.48503 * 109.46601 * 150.00151 * 3 2 1 7 7 C 1.38704 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99206 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.35501 * 117.00154 * 185.06377 * 9 7 2 11 11 C 1.38836 * 120.16548 * 354.39973 * 10 9 7 12 12 C 1.38025 * 120.07943 * 180.29611 * 11 10 9 13 13 C 1.38598 * 120.41080 * 359.68408 * 12 11 10 14 14 C 1.37803 * 120.33095 * 359.97438 * 13 12 11 15 15 C 1.39733 * 119.91453 * 0.02562 * 14 13 12 16 16 C 1.47400 * 120.20149 * 180.02562 * 15 14 13 17 17 O 1.21513 * 119.99824 * 180.02562 * 16 15 14 18 18 O 1.34760 * 120.00009 * 359.72817 * 16 15 14 19 19 C 1.45196 * 116.99778 * 180.27492 * 18 16 15 20 20 C 1.53005 * 109.47076 * 180.02562 * 19 18 16 21 21 H 1.09002 * 109.46730 * 305.00268 * 20 19 18 22 22 C 1.52998 * 109.47192 * 64.99742 * 20 19 18 23 23 C 1.52997 * 109.47290 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47253 * 300.00060 * 23 22 20 25 25 C 1.53006 * 109.46941 * 59.99961 * 24 23 22 26 26 H 1.08997 * 109.47178 * 180.02562 * 25 24 23 27 27 O 1.42894 * 109.47230 * 59.99936 * 25 24 23 28 28 C 1.52989 * 109.47285 * 184.99905 * 20 19 18 29 29 H 0.96998 * 119.99565 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.96265 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.79675 * 179.69660 * 12 11 10 32 32 H 1.07995 * 119.82973 * 180.02562 * 13 12 11 33 33 H 1.08000 * 120.04459 * 180.02562 * 14 13 12 34 34 H 1.09003 * 109.47236 * 299.99420 * 19 18 16 35 35 H 1.09001 * 109.47431 * 60.00109 * 19 18 16 36 36 H 1.09005 * 109.47093 * 300.00217 * 22 20 19 37 37 H 1.08995 * 109.47264 * 60.00076 * 22 20 19 38 38 H 1.08998 * 109.47167 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.47314 * 60.00101 * 23 22 20 40 40 H 1.09001 * 109.46994 * 300.00238 * 24 23 22 41 41 H 1.08997 * 109.47362 * 179.97438 * 24 23 22 42 42 H 0.96700 * 113.99920 * 60.00072 * 27 25 24 43 43 H 1.09002 * 109.47533 * 299.99872 * 28 20 19 44 44 H 1.09004 * 109.47259 * 59.99576 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3347 -2.3687 -0.0005 10 6 2.0686 -3.5028 0.1055 11 6 3.4555 -3.4402 0.0910 12 6 4.2013 -4.5971 0.1930 13 6 3.5747 -5.8271 0.3169 14 6 2.1993 -5.9083 0.3402 15 6 1.4308 -4.7457 0.2380 16 6 -0.0408 -4.8251 0.2627 17 8 -0.7055 -3.8118 0.1731 18 8 -0.6492 -6.0219 0.3788 19 6 -2.1011 -6.0250 0.3902 20 6 -2.6071 -7.4623 0.5285 21 1 -2.1773 -8.0764 -0.2628 22 6 -2.1904 -8.0208 1.8906 23 6 -2.6958 -9.4583 2.0287 24 6 -4.2214 -9.4756 1.9154 25 6 -4.6381 -8.9171 0.5532 26 1 -5.7250 -8.9291 0.4727 27 8 -4.0743 -9.7219 -0.4842 28 6 -4.1327 -7.4791 0.4155 29 1 -0.4849 0.8401 0.0004 30 1 3.9513 -2.4856 -0.0054 31 1 5.2798 -4.5436 0.1763 32 1 4.1675 -6.7264 0.3965 33 1 1.7158 -6.8691 0.4374 34 1 -2.4591 -5.4317 1.2316 35 1 -2.4727 -5.5966 -0.5407 36 1 -1.1034 -8.0088 1.9711 37 1 -2.6201 -7.4067 2.6820 38 1 -2.3993 -9.8560 2.9993 39 1 -2.2657 -10.0722 1.2373 40 1 -4.6515 -8.8617 2.7068 41 1 -4.5814 -10.4998 2.0134 42 1 -4.3518 -10.6479 -0.4585 43 1 -4.5625 -6.8649 1.2068 44 1 -4.4296 -7.0811 -0.5549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795353331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:10 Heat of formation + Delta-G solvation = -177.841447 kcal Electronic energy + Delta-G solvation = -26845.052892 eV Core-core repulsion = 22919.558153 eV Total energy + Delta-G solvation = -3925.494739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60387 -40.59039 -39.94714 -38.14536 -37.43559 -36.01750 -34.38114 -32.95054 -32.12337 -30.78484 -30.64594 -27.64511 -27.18513 -24.93024 -23.50009 -23.28265 -22.32133 -21.77850 -20.72828 -19.92241 -19.22795 -18.32340 -17.71728 -17.49108 -17.33592 -16.55054 -16.36810 -16.16044 -15.78886 -15.54849 -15.45620 -15.31486 -15.03509 -14.77799 -14.40330 -14.10429 -13.67910 -13.59105 -13.52484 -13.25633 -13.09614 -13.02036 -12.72495 -12.56389 -12.48256 -12.36914 -12.13363 -12.02435 -11.85776 -11.62166 -11.54331 -11.37989 -11.16244 -10.94861 -10.86716 -10.54166 -9.93582 -9.13070 -8.49290 -6.20731 -0.05526 0.67895 1.32492 1.44018 1.51866 1.71675 1.73554 2.13633 2.81086 3.13894 3.35966 3.40204 3.58069 3.66799 3.85165 3.98486 4.07884 4.09358 4.22977 4.24142 4.26482 4.37749 4.43179 4.50409 4.52569 4.57785 4.63309 4.70001 4.78186 4.92553 5.03494 5.04115 5.06766 5.11331 5.19843 5.22445 5.29929 5.38599 5.40490 5.46657 5.55296 5.60844 5.65274 5.92291 6.11457 6.89151 6.98076 7.00104 7.70778 8.71004 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.003024 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.005439 B = 9257.361283 C =10546.346234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.021 4.021 3 Si 1.025 2.975 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.429 4.429 8 H 0.112 0.888 9 O -0.188 6.188 10 C 0.157 3.843 11 C -0.256 4.256 12 C -0.027 4.027 13 C -0.203 4.203 14 C -0.012 4.012 15 C -0.238 4.238 16 C 0.496 3.504 17 O -0.533 6.533 18 O -0.350 6.350 19 C 0.067 3.933 20 C -0.066 4.066 21 H 0.080 0.920 22 C -0.115 4.115 23 C -0.109 4.109 24 C -0.148 4.148 25 C 0.111 3.889 26 H 0.073 0.927 27 O -0.581 6.581 28 C -0.112 4.112 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.086 0.914 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 -20.643 3.793 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.221 4.221 3 Si 0.843 3.157 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.504 4.504 8 H 0.129 0.871 9 O -0.091 6.091 10 C 0.102 3.898 11 C -0.275 4.275 12 C -0.044 4.044 13 C -0.221 4.221 14 C -0.030 4.030 15 C -0.241 4.241 16 C 0.344 3.656 17 O -0.424 6.424 18 O -0.267 6.267 19 C -0.007 4.007 20 C -0.085 4.085 21 H 0.098 0.902 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.186 4.186 25 C 0.052 3.948 26 H 0.091 0.909 27 O -0.390 6.390 28 C -0.149 4.149 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.172 0.828 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.242 0.758 43 H 0.105 0.895 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.035 -19.597 3.593 20.153 hybrid contribution -0.501 0.977 -0.040 1.099 sum -3.536 -18.620 3.553 19.283 Atomic orbital electron populations 1.70314 1.08447 1.28822 1.46366 1.26819 0.96769 1.03219 0.95249 0.84525 0.77933 0.73887 0.79401 1.18601 1.19756 1.16886 1.22108 0.92937 0.81434 1.53915 0.87066 1.84147 1.35513 1.12367 1.77046 1.19976 0.91891 0.86898 0.91035 1.21301 0.91716 1.01309 1.13175 1.21541 1.01060 0.90940 0.90909 1.21222 0.93492 0.98830 1.08600 1.21376 0.94497 0.95723 0.91443 1.18505 0.88590 0.93539 1.23457 1.21467 0.89816 0.81156 0.73184 1.90978 1.67163 1.37308 1.46945 1.86473 1.23639 1.32154 1.84472 1.23255 0.76279 0.99897 1.01229 1.21011 0.96142 0.91459 0.99865 0.90204 1.21579 1.01010 0.97412 0.95225 1.21403 0.95813 0.95304 1.02163 1.22257 0.96335 1.02589 0.97426 1.21722 0.96516 0.89572 0.86944 0.90870 1.86523 1.74226 1.25626 1.52607 1.21608 0.93502 0.96866 1.02934 0.91852 0.85051 0.82058 0.81626 0.82822 0.92506 0.93052 0.92251 0.92198 0.90990 0.91608 0.90571 0.89579 0.75835 0.89504 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.53 13.67 21.62 0.30 -58.24 16 2 C -0.02 -1.23 5.49 84.85 0.47 -0.76 16 3 Si 1.02 43.50 29.55 68.60 2.03 45.53 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.43 -25.61 9.49 67.93 0.64 -24.96 16 8 H 0.11 5.89 5.21 -2.91 -0.02 5.88 16 9 O -0.19 -11.98 7.84 1.12 0.01 -11.97 16 10 C 0.16 8.20 6.66 22.92 0.15 8.35 16 11 C -0.26 -10.83 9.16 22.36 0.20 -10.62 16 12 C -0.03 -0.82 10.03 22.31 0.22 -0.60 16 13 C -0.20 -5.76 10.02 22.25 0.22 -5.53 16 14 C -0.01 -0.42 9.61 22.53 0.22 -0.21 16 15 C -0.24 -11.07 5.89 -20.00 -0.12 -11.19 16 16 C 0.50 24.57 7.89 70.23 0.55 25.12 16 17 O -0.53 -32.13 14.96 26.79 0.40 -31.73 16 18 O -0.35 -13.85 9.01 -56.71 -0.51 -14.36 16 19 C 0.07 2.32 4.85 71.98 0.35 2.67 16 20 C -0.07 -1.68 2.29 -10.80 -0.02 -1.70 16 21 H 0.08 2.19 7.68 -2.39 -0.02 2.17 16 22 C -0.11 -2.53 5.10 30.59 0.16 -2.38 16 23 C -0.11 -1.75 5.78 30.59 0.18 -1.57 16 24 C -0.15 -1.83 5.64 30.60 0.17 -1.66 16 25 C 0.11 1.67 3.78 30.61 0.12 1.78 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 O -0.58 -9.57 11.97 -148.98 -1.78 -11.35 16 28 C -0.11 -2.30 4.95 30.61 0.15 -2.14 16 29 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 30 H 0.13 5.51 5.64 -2.91 -0.02 5.49 16 31 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.15 4.35 7.61 -2.91 -0.02 4.33 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.46 7.82 -2.38 -0.02 1.44 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.11 7.68 -2.39 -0.02 1.09 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.39 2.92 9.08 -74.06 -0.67 2.25 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -84.89 363.36 4.45 -80.44 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.35 Total: 27.09 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 3.66 Total: -25.41 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.30 Total: -58.24 kcal Atomic # 8 Polarization: -67.53 SS G_CDS: -1.89 Total: -69.41 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -84.89 4.45 -80.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795353331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.400 kcal (2) G-P(sol) polarization free energy of solvation -84.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds