Wall clock time and date at job start Tue Mar 31 2020 12:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47220 * 239.99904 * 3 2 1 5 5 H 1.48502 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47112 * 119.99635 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00106 * 185.05736 * 9 7 2 11 11 C 1.38875 * 120.07087 * 354.45526 * 10 9 7 12 12 C 1.38098 * 119.93249 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07035 * 0.27809 * 12 11 10 14 14 C 1.50694 * 119.93377 * 179.69926 * 13 12 11 15 15 O 1.45204 * 109.46874 * 90.00332 * 14 13 12 16 16 C 1.34231 * 117.00030 * 180.02562 * 15 14 13 17 17 O 1.20825 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00311 * 180.02562 * 16 15 14 19 19 C 1.52992 * 109.47614 * 179.97438 * 18 16 15 20 20 H 1.09003 * 109.52113 * 305.12509 * 19 18 16 21 21 C 1.53180 * 109.52468 * 184.99865 * 19 18 16 22 22 C 1.53184 * 109.03278 * 183.11477 * 21 19 18 23 23 C 1.53085 * 109.16648 * 56.97980 * 22 21 19 24 24 O 1.42901 * 109.41655 * 302.39382 * 23 22 21 25 25 C 1.42898 * 114.10041 * 61.15257 * 24 23 22 26 26 C 1.38308 * 120.13453 * 359.45154 * 13 12 11 27 27 C 1.38098 * 120.06835 * 0.54471 * 26 13 12 28 28 H 0.96992 * 119.99905 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.03162 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.96373 * 180.02562 * 12 11 10 31 31 H 1.09005 * 109.47384 * 210.00167 * 14 13 12 32 32 H 1.09002 * 109.47262 * 330.00468 * 14 13 12 33 33 H 1.09004 * 109.46747 * 300.00351 * 18 16 15 34 34 H 1.09003 * 109.47235 * 59.99321 * 18 16 15 35 35 H 1.08997 * 109.54033 * 302.97534 * 21 19 18 36 36 H 1.08997 * 109.54578 * 63.15922 * 21 19 18 37 37 H 1.09006 * 109.51644 * 176.88385 * 22 21 19 38 38 H 1.09002 * 109.52063 * 297.00758 * 22 21 19 39 39 H 1.09008 * 109.48211 * 62.36960 * 23 22 21 40 40 H 1.08995 * 109.48380 * 182.40099 * 23 22 21 41 41 H 1.09007 * 109.47843 * 178.86435 * 25 24 23 42 42 H 1.09003 * 109.47985 * 58.83003 * 25 24 23 43 43 H 1.08004 * 119.96386 * 180.25534 * 26 13 12 44 44 H 1.08005 * 120.03204 * 179.74352 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4572 -3.4395 0.0951 12 6 4.2024 -4.5970 0.2037 13 6 3.5687 -5.8208 0.3193 14 6 4.3848 -7.0827 0.4308 15 8 4.6539 -7.3629 1.8300 16 6 5.3759 -8.4609 2.1037 17 8 5.7697 -9.1648 1.2040 18 6 5.6945 -8.8163 3.5330 19 6 6.5217 -10.1029 3.5665 20 1 5.9927 -10.8901 3.0292 21 6 6.7402 -10.5334 5.0203 22 6 7.6339 -11.7772 5.0440 23 6 8.9496 -11.4646 4.3266 24 8 8.6730 -11.0410 2.9902 25 6 7.8804 -9.8549 2.9062 26 6 2.1874 -5.8884 0.3378 27 6 1.4366 -4.7344 0.2295 28 1 -0.4849 0.8400 -0.0004 29 1 3.9527 -2.4845 0.0004 30 1 5.2812 -4.5470 0.1944 31 1 3.8309 -7.9136 -0.0061 32 1 5.3272 -6.9542 -0.1017 33 1 6.2627 -8.0065 3.9908 34 1 4.7669 -8.9666 4.0855 35 1 7.2238 -9.7264 5.5707 36 1 5.7795 -10.7641 5.4806 37 1 7.8400 -12.0579 6.0770 38 1 7.1279 -12.5990 4.5372 39 1 9.4738 -10.6704 4.8584 40 1 9.5723 -12.3588 4.3031 41 1 7.7328 -9.5898 1.8592 42 1 8.3906 -9.0397 3.4194 43 1 1.6954 -6.8453 0.4322 44 1 0.3580 -4.7883 0.2399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795899920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:20 Heat of formation + Delta-G solvation = -150.055474 kcal Electronic energy + Delta-G solvation = -25646.439580 eV Core-core repulsion = 21722.149731 eV Total energy + Delta-G solvation = -3924.289849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73922 -39.50649 -39.04980 -37.08577 -36.09704 -34.76929 -32.51940 -32.42187 -30.65624 -30.26163 -28.31123 -26.02607 -25.35617 -24.88145 -23.24448 -22.08026 -21.00628 -20.59715 -20.31077 -18.10073 -17.64245 -17.18165 -16.87314 -16.44045 -16.40380 -16.03456 -15.16963 -14.82357 -14.70044 -14.65709 -14.45488 -13.82313 -13.73381 -13.50285 -13.35999 -13.00162 -12.88157 -12.80153 -12.61986 -12.28862 -12.13522 -11.74225 -11.60788 -11.40884 -11.37195 -11.24021 -11.03948 -10.84884 -10.74583 -10.67200 -10.52336 -10.45733 -10.25730 -9.76608 -9.43538 -8.92008 -8.28922 -7.35243 -6.53866 -4.12659 1.92947 2.13242 2.15937 2.90856 3.08669 3.10971 3.12637 3.59996 3.89773 4.27162 4.34672 4.38341 4.51610 4.53797 4.69801 4.85960 4.99212 5.04000 5.07641 5.13338 5.14229 5.18833 5.22334 5.23494 5.25911 5.41331 5.49504 5.56565 5.61387 5.63201 5.64366 5.74914 5.84570 5.94855 6.11025 6.31270 6.53448 6.57867 6.78912 6.91712 6.94952 7.13034 7.24920 7.33659 7.69532 7.76333 7.90716 8.91162 9.58888 10.63451 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.001941 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.702636 B =14424.132664 C =14755.010539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.045 4.045 13 C -0.205 4.205 14 C 0.129 3.871 15 O -0.351 6.351 16 C 0.456 3.544 17 O -0.512 6.512 18 C -0.111 4.111 19 C -0.112 4.112 20 H 0.090 0.910 21 C -0.118 4.118 22 C -0.155 4.155 23 C 0.056 3.944 24 O -0.379 6.379 25 C 0.059 3.941 26 C -0.049 4.049 27 C -0.196 4.196 28 H 0.272 0.728 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.047 0.953 43 H 0.113 0.887 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.624 -18.421 9.653 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.057 3.943 15 O -0.268 6.268 16 C 0.299 3.701 17 O -0.402 6.402 18 C -0.149 4.149 19 C -0.131 4.131 20 H 0.109 0.891 21 C -0.156 4.156 22 C -0.193 4.193 23 C -0.021 4.021 24 O -0.297 6.297 25 C -0.017 4.017 26 C -0.067 4.067 27 C -0.215 4.215 28 H 0.082 0.918 29 H 0.147 0.853 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.065 0.935 43 H 0.131 0.869 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.333 -18.456 9.159 24.542 hybrid contribution 0.313 0.998 0.177 1.061 sum 13.646 -17.458 9.336 24.045 Atomic orbital electron populations 1.70025 1.06012 1.28020 1.45210 1.25329 0.95876 0.98954 0.96297 0.85754 0.78722 0.79547 0.79276 1.19413 1.20197 1.19397 1.21324 0.91878 0.80705 1.53097 0.88920 1.83976 1.34522 1.11566 1.77319 1.19437 0.90323 0.88043 0.91390 1.21140 0.93780 0.98881 1.11934 1.20615 0.98408 0.91517 0.95770 1.18876 0.93345 0.92847 1.15548 1.21714 0.98955 0.95804 0.77833 1.86664 1.65310 1.42588 1.32193 1.23675 0.75117 0.78707 0.92566 1.90637 1.50210 1.50726 1.48593 1.21421 1.02999 0.99299 0.91190 1.21656 0.97243 0.96962 0.97213 0.89135 1.21651 1.00562 0.97921 0.95444 1.22180 0.97167 0.98626 1.01329 1.22601 0.95907 0.99818 0.83775 1.87987 1.71380 1.44224 1.26139 1.22879 0.89100 0.86657 1.03081 1.20510 0.92631 0.96973 0.96585 1.20197 0.99708 0.90168 1.11458 0.91795 0.85263 0.87339 0.91175 0.91206 0.87573 0.87257 0.91427 0.90991 0.90741 0.90901 0.93270 0.89006 0.87194 0.93499 0.86907 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.75 9.49 30.89 0.29 -10.45 16 8 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 9 O -0.17 -4.78 9.76 0.06 0.00 -4.78 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.24 -5.05 9.17 -39.40 -0.36 -5.41 16 12 C -0.04 -0.81 9.69 -39.61 -0.38 -1.19 16 13 C -0.21 -3.52 5.52 -104.58 -0.58 -4.10 16 14 C 0.13 1.89 5.58 36.00 0.20 2.09 16 15 O -0.35 -4.98 10.20 -39.26 -0.40 -5.38 16 16 C 0.46 5.58 7.69 36.00 0.28 5.86 16 17 O -0.51 -7.38 13.74 -18.75 -0.26 -7.63 16 18 C -0.11 -0.92 5.29 -27.89 -0.15 -1.07 16 19 C -0.11 -0.94 2.03 -90.48 -0.18 -1.12 16 20 H 0.09 0.90 7.95 -51.93 -0.41 0.48 16 21 C -0.12 -0.74 5.31 -26.54 -0.14 -0.88 16 22 C -0.16 -0.96 6.14 -26.59 -0.16 -1.12 16 23 C 0.06 0.41 6.84 37.20 0.25 0.66 16 24 O -0.38 -4.08 10.77 -35.23 -0.38 -4.46 16 25 C 0.06 0.58 5.84 37.21 0.22 0.80 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 27 C -0.20 -4.05 9.99 -39.40 -0.39 -4.44 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.13 2.72 5.64 -52.48 -0.30 2.42 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.11 1.30 6.04 -51.92 -0.31 0.98 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 44 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -31.49 366.20 -7.98 -39.46 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.34 Total: 3.20 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -1.85 Total: -17.04 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.76 Total: -23.87 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.04 Total: -22.25 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.49 -7.98 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795899920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.590 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds