Wall clock time and date at job start Tue Mar 31 2020 12:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47220 * 239.99904 * 3 2 1 5 5 H 1.48502 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47112 * 119.99635 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00106 * 185.05736 * 9 7 2 11 11 C 1.38875 * 120.07087 * 354.45526 * 10 9 7 12 12 C 1.38098 * 119.93249 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07035 * 0.27809 * 12 11 10 14 14 C 1.50694 * 119.93377 * 179.69926 * 13 12 11 15 15 O 1.45204 * 109.46874 * 90.00332 * 14 13 12 16 16 C 1.34231 * 117.00030 * 180.02562 * 15 14 13 17 17 O 1.20825 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00311 * 180.02562 * 16 15 14 19 19 C 1.52992 * 109.47614 * 179.97438 * 18 16 15 20 20 H 1.09003 * 109.52113 * 305.12509 * 19 18 16 21 21 C 1.53180 * 109.52468 * 184.99865 * 19 18 16 22 22 C 1.53184 * 109.03278 * 183.11477 * 21 19 18 23 23 C 1.53085 * 109.16648 * 56.97980 * 22 21 19 24 24 O 1.42901 * 109.41655 * 302.39382 * 23 22 21 25 25 C 1.42898 * 114.10041 * 61.15257 * 24 23 22 26 26 C 1.38308 * 120.13453 * 359.45154 * 13 12 11 27 27 C 1.38098 * 120.06835 * 0.54471 * 26 13 12 28 28 H 0.96992 * 119.99905 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.03162 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.96373 * 180.02562 * 12 11 10 31 31 H 1.09005 * 109.47384 * 210.00167 * 14 13 12 32 32 H 1.09002 * 109.47262 * 330.00468 * 14 13 12 33 33 H 1.09004 * 109.46747 * 300.00351 * 18 16 15 34 34 H 1.09003 * 109.47235 * 59.99321 * 18 16 15 35 35 H 1.08997 * 109.54033 * 302.97534 * 21 19 18 36 36 H 1.08997 * 109.54578 * 63.15922 * 21 19 18 37 37 H 1.09006 * 109.51644 * 176.88385 * 22 21 19 38 38 H 1.09002 * 109.52063 * 297.00758 * 22 21 19 39 39 H 1.09008 * 109.48211 * 62.36960 * 23 22 21 40 40 H 1.08995 * 109.48380 * 182.40099 * 23 22 21 41 41 H 1.09007 * 109.47843 * 178.86435 * 25 24 23 42 42 H 1.09003 * 109.47985 * 58.83003 * 25 24 23 43 43 H 1.08004 * 119.96386 * 180.25534 * 26 13 12 44 44 H 1.08005 * 120.03204 * 179.74352 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4572 -3.4395 0.0951 12 6 4.2024 -4.5970 0.2037 13 6 3.5687 -5.8208 0.3193 14 6 4.3848 -7.0827 0.4308 15 8 4.6539 -7.3629 1.8300 16 6 5.3759 -8.4609 2.1037 17 8 5.7697 -9.1648 1.2040 18 6 5.6945 -8.8163 3.5330 19 6 6.5217 -10.1029 3.5665 20 1 5.9927 -10.8901 3.0292 21 6 6.7402 -10.5334 5.0203 22 6 7.6339 -11.7772 5.0440 23 6 8.9496 -11.4646 4.3266 24 8 8.6730 -11.0410 2.9902 25 6 7.8804 -9.8549 2.9062 26 6 2.1874 -5.8884 0.3378 27 6 1.4366 -4.7344 0.2295 28 1 -0.4849 0.8400 -0.0004 29 1 3.9527 -2.4845 0.0004 30 1 5.2812 -4.5470 0.1944 31 1 3.8309 -7.9136 -0.0061 32 1 5.3272 -6.9542 -0.1017 33 1 6.2627 -8.0065 3.9908 34 1 4.7669 -8.9666 4.0855 35 1 7.2238 -9.7264 5.5707 36 1 5.7795 -10.7641 5.4806 37 1 7.8400 -12.0579 6.0770 38 1 7.1279 -12.5990 4.5372 39 1 9.4738 -10.6704 4.8584 40 1 9.5723 -12.3588 4.3031 41 1 7.7328 -9.5898 1.8592 42 1 8.3906 -9.0397 3.4194 43 1 1.6954 -6.8453 0.4322 44 1 0.3580 -4.7883 0.2399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795899920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:20 Heat of formation + Delta-G solvation = -168.083903 kcal Electronic energy + Delta-G solvation = -25647.221351 eV Core-core repulsion = 21722.149731 eV Total energy + Delta-G solvation = -3925.071620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71103 -40.82160 -40.15068 -38.57705 -37.36436 -35.46688 -34.37193 -33.08061 -32.13556 -31.83438 -29.12819 -27.71369 -26.40935 -25.96468 -23.98872 -23.69751 -22.24924 -21.73612 -20.96244 -19.90573 -18.92553 -18.61210 -17.76170 -17.54479 -17.11392 -16.89442 -16.39537 -16.29607 -15.92532 -15.73597 -15.57600 -15.33596 -15.16368 -14.68969 -14.37992 -14.33359 -13.94711 -13.74614 -13.54629 -13.54150 -13.37566 -13.03574 -12.81552 -12.57377 -12.44453 -12.24065 -12.15711 -12.13232 -11.99249 -11.88096 -11.64892 -11.37013 -11.21439 -11.11336 -10.80932 -10.39738 -9.85092 -9.06680 -8.49124 -6.17752 0.43553 0.54587 1.21234 1.35831 1.45261 1.51947 1.85444 2.17005 2.81340 2.96694 3.13463 3.45052 3.60632 3.74980 3.78221 3.87751 3.91237 3.99944 4.05015 4.13990 4.24035 4.29054 4.32868 4.46268 4.52404 4.54175 4.58804 4.67014 4.73176 4.75333 4.84132 4.96611 4.98155 5.06018 5.11227 5.11400 5.21597 5.22815 5.40002 5.45470 5.57706 5.65080 5.68097 5.99524 6.11186 6.28376 6.77239 6.95105 7.72930 8.73247 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027862 B = 0.001941 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.702636 B =14424.132664 C =14755.010539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.226 6.226 10 C 0.125 3.875 11 C -0.245 4.245 12 C -0.044 4.044 13 C -0.182 4.182 14 C 0.130 3.870 15 O -0.360 6.360 16 C 0.456 3.544 17 O -0.536 6.536 18 C -0.104 4.104 19 C -0.107 4.107 20 H 0.070 0.930 21 C -0.115 4.115 22 C -0.154 4.154 23 C 0.048 3.952 24 O -0.408 6.408 25 C 0.058 3.942 26 C -0.042 4.042 27 C -0.206 4.206 28 H 0.274 0.726 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.149 0.851 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.966 -20.043 11.411 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.121 0.879 9 O -0.132 6.132 10 C 0.074 3.926 11 C -0.265 4.265 12 C -0.062 4.062 13 C -0.183 4.183 14 C 0.057 3.943 15 O -0.277 6.277 16 C 0.301 3.699 17 O -0.427 6.427 18 C -0.142 4.142 19 C -0.126 4.126 20 H 0.089 0.911 21 C -0.152 4.152 22 C -0.191 4.191 23 C -0.028 4.028 24 O -0.327 6.327 25 C -0.019 4.019 26 C -0.060 4.060 27 C -0.225 4.225 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.167 0.833 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.712 -20.143 10.929 27.786 hybrid contribution -0.232 1.056 -0.341 1.134 sum 15.480 -19.087 10.588 26.759 Atomic orbital electron populations 1.70171 1.08029 1.29005 1.48287 1.26613 0.96860 1.02790 0.95664 0.84643 0.77405 0.74183 0.79979 1.18146 1.19671 1.18076 1.21816 0.92627 0.81289 1.53482 0.87856 1.83948 1.36031 1.12648 1.80587 1.19993 0.91633 0.88001 0.92975 1.21252 0.93063 1.00039 1.12101 1.20960 0.99987 0.90685 0.94524 1.19273 0.93507 0.93760 1.11712 1.21629 0.99237 0.94621 0.78776 1.86635 1.66032 1.43719 1.31269 1.24441 0.73976 0.77561 0.93941 1.90646 1.51008 1.51281 1.49723 1.21560 1.04277 0.99744 0.88576 1.21587 0.96065 0.96447 0.98456 0.91150 1.21668 1.01468 0.98307 0.93806 1.22179 0.96375 0.98346 1.02230 1.22832 0.96914 1.00566 0.82535 1.87938 1.71723 1.44627 1.28458 1.22832 0.90158 0.86973 1.01930 1.20901 0.92968 0.97312 0.94802 1.20452 1.00226 0.90308 1.11532 0.91730 0.85774 0.84082 0.89932 0.90107 0.85403 0.85038 0.89995 0.89645 0.88612 0.91909 0.92125 0.88143 0.89808 0.92130 0.83306 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 13.67 21.61 0.30 -55.15 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 3 Si 1.02 41.92 29.55 68.60 2.03 43.95 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.42 -23.77 9.49 67.92 0.64 -23.12 16 8 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -13.38 9.76 -22.71 -0.22 -13.60 16 10 C 0.13 6.11 6.65 22.58 0.15 6.26 16 11 C -0.25 -10.42 9.17 22.39 0.21 -10.22 16 12 C -0.04 -1.48 9.69 22.25 0.22 -1.26 16 13 C -0.18 -5.71 5.52 -19.84 -0.11 -5.82 16 14 C 0.13 3.34 5.58 71.23 0.40 3.74 16 15 O -0.36 -8.97 10.20 -51.43 -0.52 -9.49 16 16 C 0.46 9.90 7.69 71.24 0.55 10.45 16 17 O -0.54 -14.49 13.74 21.97 0.30 -14.18 16 18 C -0.10 -1.37 5.29 29.84 0.16 -1.21 16 19 C -0.11 -1.54 2.03 -10.71 -0.02 -1.56 16 20 H 0.07 1.30 7.95 -2.39 -0.02 1.28 16 21 C -0.12 -1.05 5.31 30.72 0.16 -0.89 16 22 C -0.15 -1.48 6.14 30.68 0.19 -1.30 16 23 C 0.05 0.60 6.84 72.01 0.49 1.09 16 24 O -0.41 -8.38 10.77 -148.98 -1.60 -9.98 16 25 C 0.06 1.05 5.84 72.01 0.42 1.47 16 26 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 27 C -0.21 -8.55 9.99 22.39 0.22 -8.33 16 28 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 30 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 31 H 0.08 1.97 8.08 -2.38 -0.02 1.95 16 32 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 33 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.94 6.04 -2.38 -0.01 1.92 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 43 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 44 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -73.37 366.20 5.63 -67.74 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 1.00 Total: 23.31 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 4.36 Total: -32.59 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.30 Total: -55.15 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -2.05 Total: -47.26 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -73.37 5.63 -67.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795899920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.349 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds