Wall clock time and date at job start Tue Mar 31 2020 12:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48496 * 109.47111 * 269.99667 * 3 2 1 5 5 H 1.48497 * 109.47003 * 30.00037 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99498 * 3 2 1 7 7 C 1.37877 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47221 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47562 * 180.02562 * 10 9 7 12 12 C 1.35891 * 117.00338 * 180.02562 * 11 10 9 13 13 C 1.38812 * 120.02164 * 359.72017 * 12 11 10 14 14 C 1.38166 * 120.08830 * 179.76822 * 13 12 11 15 15 C 1.38166 * 120.12604 * 0.51027 * 14 13 12 16 16 C 1.38901 * 120.03796 * 359.74482 * 15 14 13 17 17 N 1.39882 * 120.04263 * 179.97438 * 16 15 14 18 18 C 1.34776 * 120.00023 * 221.91900 * 17 16 15 19 19 S 1.71196 * 120.00045 * 5.54301 * 18 17 16 20 20 N 1.34779 * 119.99935 * 185.53768 * 18 17 16 21 21 C 1.46497 * 119.99890 * 180.02562 * 20 18 17 22 22 C 1.53784 * 113.61866 * 254.13816 * 21 20 18 23 23 C 1.53953 * 87.02161 * 220.05053 * 22 21 20 24 24 C 1.53786 * 87.11279 * 25.36167 * 23 22 21 25 25 C 1.38579 * 120.02099 * 179.97438 * 12 11 10 26 26 H 0.97008 * 120.00028 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47390 * 59.99874 * 9 7 2 28 28 H 1.09001 * 109.47443 * 299.99266 * 9 7 2 29 29 H 1.08997 * 109.46899 * 59.99748 * 10 9 7 30 30 H 1.09002 * 109.46888 * 299.99734 * 10 9 7 31 31 H 1.08001 * 119.95250 * 0.02562 * 13 12 11 32 32 H 1.07999 * 119.93854 * 180.25849 * 14 13 12 33 33 H 1.07997 * 119.97925 * 179.71992 * 15 14 13 34 34 H 0.97003 * 119.99888 * 41.92566 * 17 16 15 35 35 H 0.97004 * 120.00121 * 0.02562 * 20 18 17 36 36 H 1.08998 * 112.85301 * 25.34019 * 21 20 18 37 37 H 1.09003 * 113.61150 * 334.56971 * 22 21 20 38 38 H 1.08996 * 113.61420 * 105.46716 * 22 21 20 39 39 H 1.08997 * 113.53914 * 270.80973 * 23 22 21 40 40 H 1.09005 * 113.66459 * 139.93028 * 23 22 21 41 41 H 1.08994 * 113.61231 * 220.09034 * 24 23 22 42 42 H 1.09005 * 113.68916 * 89.19751 * 24 23 22 43 43 H 1.08001 * 120.06235 * 359.95471 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5306 -4.8997 -0.0001 12 6 2.2706 -6.0394 0.0004 13 6 3.6569 -5.9674 -0.0045 14 6 4.4107 -7.1253 0.0008 15 6 3.7875 -8.3584 0.0003 16 6 2.4007 -8.4367 -0.0001 17 7 1.7697 -9.6851 -0.0012 18 6 0.6909 -9.8942 -0.7814 19 16 0.1777 -8.6816 -1.8755 20 7 0.0160 -11.0581 -0.7004 21 6 -1.1563 -11.2856 -1.5489 22 6 -2.4915 -11.2016 -0.7905 23 6 -2.9546 -12.4027 -1.6349 24 6 -1.4692 -12.7733 -1.7812 25 6 1.6419 -7.2743 0.0004 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 2.8717 -3.6044 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 4.1468 -5.0049 -0.0082 32 1 5.4891 -7.0664 0.0013 33 1 4.3791 -9.2620 -0.0001 34 1 2.1086 -10.4002 0.5598 35 1 0.3066 -11.7451 -0.0803 36 1 -1.1367 -10.6954 -2.4651 37 1 -2.4041 -11.4235 0.2732 38 1 -3.0493 -10.2864 -0.9885 39 1 -3.4280 -12.1176 -2.5744 40 1 -3.5340 -13.1352 -1.0729 41 1 -1.2031 -13.1250 -2.7780 42 1 -1.1006 -13.4257 -0.9897 43 1 0.5634 -7.3324 0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814194587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:40 Heat of formation + Delta-G solvation = 25.705518 kcal Electronic energy + Delta-G solvation = -23274.254750 eV Core-core repulsion = 19832.632092 eV Total energy + Delta-G solvation = -3441.622658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46156 -39.71692 -38.40049 -36.56303 -34.11020 -33.28426 -30.83986 -29.55848 -29.05159 -26.19055 -25.74216 -24.95558 -24.11114 -22.45665 -22.13337 -20.77863 -20.18931 -18.91637 -18.30561 -17.20303 -16.30132 -15.98367 -15.83694 -15.62597 -15.54940 -15.19929 -15.07101 -14.64752 -14.34091 -13.53375 -13.45872 -13.09378 -12.98203 -12.73891 -12.42292 -12.26792 -11.77574 -11.70671 -11.52567 -11.35595 -11.17262 -11.05756 -10.90681 -10.82950 -10.73728 -10.45522 -9.98156 -9.75286 -9.58226 -9.22672 -8.64440 -8.38259 -7.92652 -7.74455 -7.02572 -6.03613 -4.08052 0.84192 1.62653 1.69560 1.84847 2.33926 3.15326 3.32069 3.37681 3.40483 3.94789 3.97161 3.99518 4.12707 4.40016 4.42494 4.46932 5.00734 5.12019 5.15069 5.18717 5.21868 5.32056 5.32589 5.40778 5.43443 5.49173 5.62162 5.65329 5.68878 5.78589 6.07501 6.11708 6.13964 6.25575 6.46830 6.48652 6.56316 6.66263 6.81164 6.95435 7.10733 7.59356 7.73747 7.88738 8.16279 8.31431 8.97705 9.55739 11.07992 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.002428 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.472336 B =11527.313887 C =12818.932499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.309 6.309 12 C 0.156 3.844 13 C -0.207 4.207 14 C -0.074 4.074 15 C -0.175 4.175 16 C 0.157 3.843 17 N -0.630 5.630 18 C 0.551 3.449 19 S -0.599 6.599 20 N -0.675 5.675 21 C 0.120 3.880 22 C -0.149 4.149 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.114 4.114 26 H 0.263 0.737 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.404 0.596 35 H 0.395 0.605 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 -30.112 1.232 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.222 6.222 12 C 0.107 3.893 13 C -0.226 4.226 14 C -0.094 4.094 15 C -0.196 4.196 16 C 0.064 3.936 17 N -0.255 5.255 18 C 0.195 3.805 19 S -0.470 6.470 20 N -0.304 5.304 21 C 0.016 3.984 22 C -0.188 4.188 23 C -0.175 4.175 24 C -0.186 4.186 25 C -0.136 4.136 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.242 0.758 35 H 0.232 0.768 36 H 0.162 0.838 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.016 -29.117 0.407 29.137 hybrid contribution 1.302 -0.366 1.101 1.744 sum 2.318 -29.483 1.508 29.612 Atomic orbital electron populations 1.69984 1.06086 1.26884 1.49765 1.24992 0.94896 0.99343 0.95015 0.86496 0.79703 0.83025 0.78199 1.20507 1.21106 1.19801 1.20975 0.93018 0.90237 1.52094 0.92377 1.19125 0.94207 0.88959 0.98959 1.23334 0.97085 0.80877 0.99593 1.86203 1.36275 1.12967 1.86750 1.18835 0.89686 0.87328 0.93446 1.21455 0.93204 0.99948 1.07986 1.20590 0.99377 0.91101 0.98291 1.20572 0.91748 0.98303 1.08949 1.16899 0.90758 0.82402 1.03562 1.42163 1.27474 1.13989 1.41874 1.22616 0.82278 0.89263 0.86331 1.93784 1.76949 1.37578 1.38663 1.45129 1.29317 1.14696 1.41235 1.23312 0.81699 0.97232 0.96188 1.23421 0.96137 0.99809 0.99396 1.22700 0.95542 0.98165 1.01093 1.23371 0.97078 0.95249 1.02899 1.20407 1.01770 0.88412 1.02981 0.92749 0.95272 0.95409 0.93168 0.93064 0.84954 0.85638 0.86354 0.75826 0.76839 0.83830 0.89999 0.89826 0.89268 0.90658 0.90275 0.89899 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.45 4.68 37.16 0.17 1.62 16 11 O -0.31 -6.78 10.13 -19.40 -0.20 -6.98 16 12 C 0.16 2.88 6.68 -39.24 -0.26 2.62 16 13 C -0.21 -3.27 9.04 -39.40 -0.36 -3.62 16 14 C -0.07 -0.95 10.03 -39.63 -0.40 -1.34 16 15 C -0.17 -2.05 9.97 -39.36 -0.39 -2.44 16 16 C 0.16 2.06 5.90 -83.73 -0.49 1.57 16 17 N -0.63 -6.06 5.33 -11.42 -0.06 -6.12 16 18 C 0.55 6.13 7.74 -86.92 -0.67 5.46 16 19 S -0.60 -10.09 24.48 -107.50 -2.63 -12.73 16 20 N -0.68 -4.78 5.37 -54.73 -0.29 -5.08 16 21 C 0.12 0.88 3.99 -67.12 -0.27 0.61 16 22 C -0.15 -1.00 7.89 -25.83 -0.20 -1.20 16 23 C -0.14 -0.67 8.09 -25.83 -0.21 -0.88 16 24 C -0.15 -0.68 7.83 -25.91 -0.20 -0.88 16 25 C -0.11 -1.92 7.79 -39.24 -0.31 -2.22 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 30 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 31 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.40 2.20 8.84 -40.82 -0.36 1.84 16 35 H 0.40 1.45 8.73 -40.82 -0.36 1.09 16 36 H 0.14 1.43 6.64 -51.93 -0.34 1.09 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.27 8.11 -51.93 -0.42 -0.15 16 43 H 0.15 2.72 6.27 -50.03 -0.31 2.40 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -35.17 368.37 -12.34 -47.50 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.27 Total: 1.37 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -4.15 Total: -13.83 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.38 Total: -37.53 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.20 Total: -6.98 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -10.09 SS G_CDS: -2.63 Total: -12.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.17 -12.34 -47.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814194587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.208 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds