Wall clock time and date at job start Tue Mar 31 2020 12:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48496 * 109.47111 * 269.99667 * 3 2 1 5 5 H 1.48497 * 109.47003 * 30.00037 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99498 * 3 2 1 7 7 C 1.37877 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00377 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47221 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47562 * 180.02562 * 10 9 7 12 12 C 1.35891 * 117.00338 * 180.02562 * 11 10 9 13 13 C 1.38812 * 120.02164 * 359.72017 * 12 11 10 14 14 C 1.38166 * 120.08830 * 179.76822 * 13 12 11 15 15 C 1.38166 * 120.12604 * 0.51027 * 14 13 12 16 16 C 1.38901 * 120.03796 * 359.74482 * 15 14 13 17 17 N 1.39882 * 120.04263 * 179.97438 * 16 15 14 18 18 C 1.34776 * 120.00023 * 221.91900 * 17 16 15 19 19 S 1.71196 * 120.00045 * 5.54301 * 18 17 16 20 20 N 1.34779 * 119.99935 * 185.53768 * 18 17 16 21 21 C 1.46497 * 119.99890 * 180.02562 * 20 18 17 22 22 C 1.53784 * 113.61866 * 254.13816 * 21 20 18 23 23 C 1.53953 * 87.02161 * 220.05053 * 22 21 20 24 24 C 1.53786 * 87.11279 * 25.36167 * 23 22 21 25 25 C 1.38579 * 120.02099 * 179.97438 * 12 11 10 26 26 H 0.97008 * 120.00028 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47390 * 59.99874 * 9 7 2 28 28 H 1.09001 * 109.47443 * 299.99266 * 9 7 2 29 29 H 1.08997 * 109.46899 * 59.99748 * 10 9 7 30 30 H 1.09002 * 109.46888 * 299.99734 * 10 9 7 31 31 H 1.08001 * 119.95250 * 0.02562 * 13 12 11 32 32 H 1.07999 * 119.93854 * 180.25849 * 14 13 12 33 33 H 1.07997 * 119.97925 * 179.71992 * 15 14 13 34 34 H 0.97003 * 119.99888 * 41.92566 * 17 16 15 35 35 H 0.97004 * 120.00121 * 0.02562 * 20 18 17 36 36 H 1.08998 * 112.85301 * 25.34019 * 21 20 18 37 37 H 1.09003 * 113.61150 * 334.56971 * 22 21 20 38 38 H 1.08996 * 113.61420 * 105.46716 * 22 21 20 39 39 H 1.08997 * 113.53914 * 270.80973 * 23 22 21 40 40 H 1.09005 * 113.66459 * 139.93028 * 23 22 21 41 41 H 1.08994 * 113.61231 * 220.09034 * 24 23 22 42 42 H 1.09005 * 113.68916 * 89.19751 * 24 23 22 43 43 H 1.08001 * 120.06235 * 359.95471 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5306 -4.8997 -0.0001 12 6 2.2706 -6.0394 0.0004 13 6 3.6569 -5.9674 -0.0045 14 6 4.4107 -7.1253 0.0008 15 6 3.7875 -8.3584 0.0003 16 6 2.4007 -8.4367 -0.0001 17 7 1.7697 -9.6851 -0.0012 18 6 0.6909 -9.8942 -0.7814 19 16 0.1777 -8.6816 -1.8755 20 7 0.0160 -11.0581 -0.7004 21 6 -1.1563 -11.2856 -1.5489 22 6 -2.4915 -11.2016 -0.7905 23 6 -2.9546 -12.4027 -1.6349 24 6 -1.4692 -12.7733 -1.7812 25 6 1.6419 -7.2743 0.0004 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 2.8717 -3.6044 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 4.1468 -5.0049 -0.0082 32 1 5.4891 -7.0664 0.0013 33 1 4.3791 -9.2620 -0.0001 34 1 2.1086 -10.4002 0.5598 35 1 0.3066 -11.7451 -0.0803 36 1 -1.1367 -10.6954 -2.4651 37 1 -2.4041 -11.4235 0.2732 38 1 -3.0493 -10.2864 -0.9885 39 1 -3.4280 -12.1176 -2.5744 40 1 -3.5340 -13.1352 -1.0729 41 1 -1.2031 -13.1250 -2.7780 42 1 -1.1006 -13.4257 -0.9897 43 1 0.5634 -7.3324 0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814194587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:39 Heat of formation + Delta-G solvation = 3.278994 kcal Electronic energy + Delta-G solvation = -23275.227237 eV Core-core repulsion = 19832.632092 eV Total energy + Delta-G solvation = -3442.595145 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48626 -40.65100 -39.52478 -37.67600 -35.49158 -34.92355 -32.58833 -30.99536 -30.26205 -27.02514 -26.72543 -26.41544 -24.96120 -23.91969 -23.31077 -22.32099 -20.94473 -20.05556 -19.24993 -18.55966 -17.91872 -17.07328 -17.00578 -16.88791 -16.69964 -16.54222 -16.33878 -16.05055 -15.49572 -14.56557 -14.47502 -14.32964 -14.26501 -13.95097 -13.50937 -13.41877 -13.27032 -12.95764 -12.67983 -12.62077 -12.54062 -12.30165 -12.22944 -12.08567 -11.73929 -11.56040 -11.52184 -11.43505 -11.38301 -10.75558 -10.61760 -9.73067 -9.17018 -8.97739 -8.30745 -8.25434 -6.39768 -0.19655 0.54705 0.58412 0.81583 1.35292 1.41030 1.44334 1.55315 2.26280 2.42264 2.64471 2.82042 3.08626 3.46732 3.62047 3.90296 3.93448 3.94685 4.15584 4.21223 4.23663 4.29763 4.41146 4.47730 4.57029 4.66557 4.70648 4.75846 4.78340 4.98990 5.02681 5.06654 5.09452 5.18321 5.31831 5.34730 5.44024 5.47243 5.53402 5.58596 5.66543 5.75745 6.01356 6.08557 6.32582 6.62143 6.75464 7.30329 8.88122 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018184 B = 0.002428 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.472336 B =11527.313887 C =12818.932499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.027 3.973 10 C 0.086 3.914 11 O -0.344 6.344 12 C 0.112 3.888 13 C -0.214 4.214 14 C -0.067 4.067 15 C -0.151 4.151 16 C 0.159 3.841 17 N -0.608 5.608 18 C 0.581 3.419 19 S -0.723 6.723 20 N -0.641 5.641 21 C 0.106 3.894 22 C -0.151 4.151 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.130 4.130 26 H 0.266 0.734 27 H -0.009 1.009 28 H -0.003 1.003 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.132 0.868 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.432 0.568 35 H 0.421 0.579 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 -33.423 2.465 33.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.092 0.908 9 C -0.010 4.010 10 C 0.012 3.988 11 O -0.259 6.259 12 C 0.065 3.935 13 C -0.234 4.234 14 C -0.086 4.086 15 C -0.171 4.171 16 C 0.065 3.935 17 N -0.235 5.235 18 C 0.219 3.781 19 S -0.596 6.596 20 N -0.269 5.269 21 C 0.001 3.999 22 C -0.190 4.190 23 C -0.169 4.169 24 C -0.165 4.165 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.010 0.990 28 H 0.016 0.984 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.275 0.725 35 H 0.262 0.738 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.392 -32.538 1.679 32.876 hybrid contribution 0.216 0.390 0.770 0.890 sum 4.608 -32.147 2.449 32.568 Atomic orbital electron populations 1.70147 1.08221 1.28220 1.50694 1.26118 0.95846 1.03923 0.94152 0.85232 0.78608 0.77241 0.78648 1.19620 1.20640 1.17965 1.21402 0.93902 0.90827 1.52035 0.90791 1.18972 0.94620 0.91728 0.95682 1.22860 0.95309 0.80093 1.00585 1.86105 1.37644 1.13832 1.88313 1.19151 0.91060 0.86326 0.96955 1.21594 0.91982 1.01557 1.08217 1.21067 1.01157 0.90091 0.96276 1.21084 0.90879 0.99865 1.05283 1.16970 0.91538 0.82346 1.02603 1.41862 1.26545 1.13655 1.41446 1.21839 0.82369 0.88782 0.85106 1.94119 1.79823 1.41703 1.43936 1.45074 1.27931 1.13489 1.40399 1.23418 0.81788 0.99430 0.95247 1.23450 0.95471 0.99710 1.00387 1.22687 0.96224 0.97353 1.00635 1.23333 0.96165 0.92851 1.04181 1.20346 1.00859 0.89594 1.04430 0.92476 0.99007 0.98447 0.91588 0.92343 0.84973 0.81642 0.81519 0.72475 0.73796 0.86925 0.88713 0.92559 0.89784 0.88848 0.89771 0.87176 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.20 13.29 21.45 0.28 -58.91 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.98 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.54 -31.94 9.11 25.60 0.23 -31.70 16 8 H 0.07 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.03 1.59 5.34 29.85 0.16 1.75 16 10 C 0.09 4.04 4.68 71.98 0.34 4.38 16 11 O -0.34 -16.42 10.13 -92.32 -0.94 -17.36 16 12 C 0.11 4.34 6.68 22.49 0.15 4.49 16 13 C -0.21 -6.64 9.04 22.39 0.20 -6.44 16 14 C -0.07 -1.46 10.03 22.24 0.22 -1.24 16 15 C -0.15 -2.87 9.97 22.41 0.22 -2.65 16 16 C 0.16 3.91 5.90 38.15 0.23 4.14 16 17 N -0.61 -10.05 5.33 -190.04 -1.01 -11.06 16 18 C 0.58 12.42 7.74 179.05 1.39 13.81 16 19 S -0.72 -26.33 24.48 -56.49 -1.38 -27.72 16 20 N -0.64 -7.67 5.37 -327.06 -1.75 -9.42 16 21 C 0.11 1.46 3.99 45.52 0.18 1.64 16 22 C -0.15 -1.96 7.89 31.18 0.25 -1.72 16 23 C -0.13 -1.06 8.09 31.18 0.25 -0.81 16 24 C -0.13 -0.80 7.83 31.12 0.24 -0.55 16 25 C -0.13 -4.59 7.79 22.49 0.18 -4.41 16 26 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 27 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.07 2.83 7.67 -2.39 -0.02 2.81 16 30 H 0.06 2.60 7.65 -2.39 -0.02 2.59 16 31 H 0.13 4.00 6.29 -2.91 -0.02 3.99 16 32 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.43 2.58 8.84 -92.71 -0.82 1.76 16 35 H 0.42 1.22 8.73 -92.71 -0.81 0.41 16 36 H 0.11 2.42 6.64 -2.39 -0.02 2.40 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 0.16 8.11 -2.38 -0.02 0.14 16 43 H 0.12 4.84 6.27 -4.47 -0.03 4.81 16 Total: -1.00 -86.53 368.37 1.32 -85.20 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -0.60 Total: 11.39 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 4.70 Total: -18.99 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -2.48 Total: -79.39 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.94 Total: -17.36 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -26.33 SS G_CDS: -1.38 Total: -27.72 kcal Total: -86.53 1.32 -85.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814194587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.483 kcal (2) G-P(sol) polarization free energy of solvation -86.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds