Wall clock time and date at job start Tue Mar 31 2020 12:40:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.37972 * 119.82661 * 2 1
4 4 C 1.39239 * 120.24259 * 180.02562 * 3 2 1
5 5 C 1.38997 * 118.86325 * 359.64190 * 4 3 2
6 6 C 1.37648 * 120.77777 * 0.47474 * 5 4 3
7 7 C 1.38238 * 119.81971 * 179.97438 * 2 1 3
8 8 C 1.50702 * 120.12427 * 0.16930 * 7 2 1
9 9 C 1.51645 * 106.98928 * 180.58852 * 5 4 3
10 10 H 1.09007 * 110.93685 * 257.47877 * 9 5 4
11 11 C 1.50703 * 110.94302 * 133.82709 * 9 5 4
12 12 O 1.20821 * 119.99879 * 3.01583 * 11 9 5
13 13 O 1.34222 * 119.99985 * 183.01320 * 11 9 5
14 14 C 1.45200 * 117.00094 * 179.97438 * 13 11 9
15 15 C 1.53006 * 109.47003 * 180.02562 * 14 13 11
16 16 O 1.42903 * 109.47256 * 65.00164 * 15 14 13
17 17 C 1.42891 * 113.99823 * 180.02562 * 16 15 14
18 18 C 1.50702 * 109.47131 * 179.97438 * 17 16 15
19 19 H 1.08001 * 120.00143 * 359.97438 * 18 17 16
20 20 C 1.37881 * 120.00302 * 179.97438 * 18 17 16
21 21 N 1.31513 * 119.99901 * 359.97438 * 20 18 17
22 22 Si 1.86794 * 120.00127 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.47230 * 0.02562 * 22 20 18
24 24 H 1.48497 * 109.47361 * 119.99936 * 22 20 18
25 25 H 1.48501 * 109.47491 * 240.00418 * 22 20 18
26 26 C 1.54699 * 101.94045 * 15.65240 * 9 5 4
27 27 O 1.36130 * 129.88453 * 179.55020 * 4 3 2
28 28 H 1.09001 * 109.47684 * 89.99424 * 1 2 3
29 29 H 1.09000 * 109.47242 * 210.00098 * 1 2 3
30 30 H 1.09001 * 109.47239 * 330.00125 * 1 2 3
31 31 H 1.08001 * 119.87744 * 359.97438 * 3 2 1
32 32 H 1.07995 * 119.98712 * 179.68872 * 6 5 4
33 33 H 1.09003 * 109.47074 * 90.00082 * 8 7 2
34 34 H 1.08990 * 109.47706 * 210.00627 * 8 7 2
35 35 H 1.09011 * 109.46744 * 330.00641 * 8 7 2
36 36 H 1.08993 * 109.47475 * 60.00347 * 14 13 11
37 37 H 1.09000 * 109.47147 * 300.00141 * 14 13 11
38 38 H 1.09004 * 109.46579 * 184.99602 * 15 14 13
39 39 H 1.08992 * 109.47046 * 304.99785 * 15 14 13
40 40 H 1.09007 * 109.47137 * 299.99376 * 17 16 15
41 41 H 1.08997 * 109.47704 * 59.99595 * 17 16 15
42 42 H 0.96993 * 119.99882 * 179.97438 * 21 20 18
43 43 H 1.09003 * 110.75059 * 92.98697 * 26 9 5
44 44 H 1.09004 * 110.74927 * 216.32165 * 26 9 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1932 1.1970 0.0000
4 6 3.5856 1.2071 -0.0005
5 6 4.2654 -0.0053 0.0065
6 6 3.5784 -1.1981 0.0042
7 6 2.1944 -1.1993 0.0005
8 6 1.4396 -2.5037 -0.0027
9 6 5.7470 0.3175 0.0190
10 1 6.1831 0.1838 -0.9710
11 6 6.4720 -0.5191 1.0415
12 8 5.8707 -1.3535 1.6755
13 8 7.7858 -0.3373 1.2478
14 6 8.4185 -1.1781 2.2483
15 6 9.9050 -0.8280 2.3425
16 8 10.0499 0.5089 2.8259
17 6 11.4072 0.9378 2.9510
18 6 11.4412 2.3540 3.4651
19 1 10.5185 2.8747 3.6748
20 6 12.6502 2.9851 3.6677
21 7 13.7738 2.3510 3.4128
22 14 12.6922 4.7408 4.3041
23 1 11.3040 5.2257 4.5113
24 1 13.4280 4.7825 5.5933
25 1 13.3780 5.6099 3.3144
26 6 5.7460 1.8101 0.4258
27 8 4.4509 2.2579 -0.0088
28 1 -0.3634 0.0001 -1.0276
29 1 -0.3634 -0.8900 0.5138
30 1 -0.3634 0.8900 0.5138
31 1 1.6484 2.1295 -0.0004
32 1 4.1195 -2.1327 0.0047
33 1 1.2603 -2.8172 -1.0312
34 1 2.0265 -3.2644 0.5119
35 1 0.4859 -2.3729 0.5088
36 1 8.3087 -2.2249 1.9654
37 1 7.9444 -1.0114 3.2155
38 1 10.3978 -1.5176 3.0280
39 1 10.3606 -0.9090 1.3557
40 1 11.9316 0.2850 3.6489
41 1 11.8936 0.8936 1.9766
42 1 14.6243 2.7951 3.5550
43 1 5.8488 1.9160 1.5058
44 1 6.5363 2.3524 -0.0932
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000815241703.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:40:59
Heat of formation + Delta-G solvation = -145.179007 kcal
Electronic energy + Delta-G solvation = -26178.253516 eV
Core-core repulsion = 22254.175127 eV
Total energy + Delta-G solvation = -3924.078389 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.71566 -40.07774 -38.39909 -37.15088 -36.11750 -33.58805 -32.80907 -32.24927
-31.51088 -30.02257 -27.31548 -26.95266 -26.57811 -24.44676 -22.71310 -22.45642
-22.08969 -21.13060 -20.35515 -17.98129 -17.40359 -17.06012 -16.54743 -16.45795
-16.24666 -15.65258 -15.37537 -14.92754 -14.64785 -14.53871 -14.36578 -14.23142
-13.95830 -13.63945 -13.31373 -13.07160 -13.03880 -12.63720 -12.57220 -12.32246
-12.27004 -12.16070 -11.95126 -11.57264 -11.48339 -11.00999 -10.97005 -10.90261
-10.79084 -10.76220 -10.47961 -10.41350 -10.08116 -9.15333 -8.97046 -8.92332
-8.25747 -8.19913 -6.15253 -4.17028 0.98726 1.17907 2.09011 2.57622
3.00915 3.27019 3.33718 3.40088 3.48256 3.92574 4.21011 4.29274
4.56495 4.61812 4.63586 4.69306 4.75901 4.91611 4.96707 5.06455
5.15334 5.21545 5.22835 5.33998 5.36370 5.38285 5.39178 5.44382
5.49813 5.58270 5.73339 5.80046 5.86501 5.90696 6.01956 6.05139
6.18409 6.34740 6.43842 6.49066 6.96005 7.01049 7.35545 7.70595
7.75017 8.08597 8.47578 8.95613 9.47969 10.96303
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.020897 B = 0.002424 C = 0.002227
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1339.557404 B =11546.110906 C =12567.549851
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.047 4.047
3 C -0.140 4.140
4 C 0.113 3.887
5 C -0.166 4.166
6 C -0.035 4.035
7 C -0.122 4.122
8 C -0.110 4.110
9 C -0.071 4.071
10 H 0.133 0.867
11 C 0.470 3.530
12 O -0.500 6.500
13 O -0.338 6.338
14 C 0.074 3.926
15 C 0.061 3.939
16 O -0.391 6.391
17 C 0.194 3.806
18 C -0.514 4.514
19 H 0.067 0.933
20 C 0.056 3.944
21 N -0.898 5.898
22 Si 0.908 3.092
23 H -0.270 1.270
24 H -0.282 1.282
25 H -0.282 1.282
26 C 0.068 3.932
27 O -0.298 6.298
28 H 0.073 0.927
29 H 0.073 0.927
30 H 0.068 0.932
31 H 0.130 0.870
32 H 0.127 0.873
33 H 0.068 0.932
34 H 0.065 0.935
35 H 0.069 0.931
36 H 0.079 0.921
37 H 0.078 0.922
38 H 0.064 0.936
39 H 0.051 0.949
40 H 0.006 0.994
41 H 0.008 0.992
42 H 0.264 0.736
43 H 0.088 0.912
44 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.861 -8.340 -9.704 27.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.048 4.048
3 C -0.159 4.159
4 C 0.068 3.932
5 C -0.167 4.167
6 C -0.053 4.053
7 C -0.122 4.122
8 C -0.166 4.166
9 C -0.090 4.090
10 H 0.151 0.849
11 C 0.312 3.688
12 O -0.388 6.388
13 O -0.254 6.254
14 C 0.001 3.999
15 C -0.016 4.016
16 O -0.311 6.311
17 C 0.120 3.880
18 C -0.553 4.553
19 H 0.085 0.915
20 C -0.145 4.145
21 N -0.537 5.537
22 Si 0.735 3.265
23 H -0.194 1.194
24 H -0.208 1.208
25 H -0.208 1.208
26 C -0.007 4.007
27 O -0.212 6.212
28 H 0.092 0.908
29 H 0.092 0.908
30 H 0.087 0.913
31 H 0.148 0.852
32 H 0.145 0.855
33 H 0.087 0.913
34 H 0.084 0.916
35 H 0.088 0.912
36 H 0.097 0.903
37 H 0.096 0.904
38 H 0.081 0.919
39 H 0.069 0.931
40 H 0.024 0.976
41 H 0.025 0.975
42 H 0.073 0.927
43 H 0.106 0.894
44 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -23.984 -8.218 -9.481 27.067
hybrid contribution 0.861 0.464 0.409 1.060
sum -23.123 -7.754 -9.072 26.021
Atomic orbital electron populations
1.20875 0.90629 1.03177 1.02608 1.19446 0.95998 0.91560 0.97753
1.20023 0.89617 0.98627 1.07614 1.19492 0.91482 0.85849 0.96412
1.20150 0.92434 0.94392 1.09741 1.20159 0.92917 0.96668 0.95589
1.19599 0.93007 0.95123 1.04468 1.20764 0.99910 0.93793 1.02161
1.21143 0.92377 0.95823 0.99629 0.84933 1.23004 0.81380 0.82088
0.82342 1.90657 1.67866 1.33566 1.46708 1.86592 1.22570 1.59903
1.56289 1.23265 0.93110 0.92847 0.90684 1.22325 0.92001 0.88285
0.99016 1.87911 1.31137 1.25988 1.86056 1.20249 0.76775 0.95336
0.95651 1.21075 0.93090 0.97336 1.43763 0.91463 1.24957 0.95112
0.98903 0.95578 1.69966 0.97499 1.37500 1.48774 0.86273 0.78315
0.83461 0.78416 1.19446 1.20833 1.20783 1.23840 0.84228 0.90574
1.02038 1.86869 1.19820 1.32200 1.82288 0.90800 0.90791 0.91347
0.85247 0.85518 0.91347 0.91569 0.91196 0.90316 0.90391 0.91851
0.93124 0.97594 0.97463 0.92658 0.89396 0.85455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.74 9.59 36.01 0.35 -0.40 16
2 C -0.05 -0.46 5.87 -104.72 -0.61 -1.07 16
3 C -0.14 -1.53 9.71 -39.31 -0.38 -1.91 16
4 C 0.11 1.43 7.04 -38.93 -0.27 1.16 16
5 C -0.17 -2.10 5.42 -104.09 -0.56 -2.66 16
6 C -0.04 -0.42 8.72 -39.74 -0.35 -0.76 16
7 C -0.12 -1.23 5.89 -104.56 -0.62 -1.85 16
8 C -0.11 -0.80 9.61 36.01 0.35 -0.45 16
9 C -0.07 -0.85 3.63 -91.56 -0.33 -1.18 16
10 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16
11 C 0.47 6.83 7.19 36.01 0.26 7.09 16
12 O -0.50 -8.13 14.83 -18.75 -0.28 -8.41 16
13 O -0.34 -5.37 10.19 -42.00 -0.43 -5.80 16
14 C 0.07 1.14 5.85 37.16 0.22 1.36 16
15 C 0.06 1.09 6.33 37.16 0.24 1.32 16
16 O -0.39 -9.25 10.30 -38.79 -0.40 -9.65 16
17 C 0.19 5.22 5.69 36.01 0.20 5.43 16
18 C -0.51 -14.99 9.43 -34.44 -0.32 -15.31 16
19 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16
20 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16
21 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16
22 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16
23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16
25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
26 C 0.07 0.81 7.54 38.05 0.29 1.10 16
27 O -0.30 -3.87 11.10 -20.15 -0.22 -4.09 16
28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
29 H 0.07 0.40 5.94 -51.93 -0.31 0.09 16
30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16
31 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16
32 H 0.13 1.44 7.72 -52.49 -0.41 1.03 16
33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16
35 H 0.07 0.41 5.94 -51.92 -0.31 0.11 16
36 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16
37 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16
38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
40 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
41 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16
42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
43 H 0.09 1.11 7.91 -51.93 -0.41 0.69 16
44 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16
LS Contribution 372.79 15.07 5.62 5.62
Total: -1.00 -33.58 372.79 -8.12 -41.70
By element:
Atomic # 1 Polarization: 2.95 SS G_CDS: -6.47 Total: -3.52 kcal
Atomic # 6 Polarization: -5.00 SS G_CDS: -1.66 Total: -6.65 kcal
Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal
Atomic # 8 Polarization: -26.63 SS G_CDS: -1.33 Total: -27.96 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -33.58 -8.12 -41.70 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815241703.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -103.480 kcal
(2) G-P(sol) polarization free energy of solvation -33.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.059 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal
(6) G-S(sol) free energy of system = (1) + (5) -145.179 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds