Wall clock time and date at job start Tue Mar 31 2020 12:40:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.37972 * 119.82661 * 2 1
4 4 C 1.39239 * 120.24259 * 180.02562 * 3 2 1
5 5 C 1.38997 * 118.86325 * 359.64190 * 4 3 2
6 6 C 1.37648 * 120.77777 * 0.47474 * 5 4 3
7 7 C 1.38238 * 119.81971 * 179.97438 * 2 1 3
8 8 C 1.50702 * 120.12427 * 0.16930 * 7 2 1
9 9 C 1.51645 * 106.98928 * 180.58852 * 5 4 3
10 10 H 1.09007 * 110.93685 * 257.47877 * 9 5 4
11 11 C 1.50703 * 110.94302 * 133.82709 * 9 5 4
12 12 O 1.20821 * 119.99879 * 3.01583 * 11 9 5
13 13 O 1.34222 * 119.99985 * 183.01320 * 11 9 5
14 14 C 1.45200 * 117.00094 * 179.97438 * 13 11 9
15 15 C 1.53006 * 109.47003 * 180.02562 * 14 13 11
16 16 O 1.42903 * 109.47256 * 65.00164 * 15 14 13
17 17 C 1.42891 * 113.99823 * 180.02562 * 16 15 14
18 18 C 1.50702 * 109.47131 * 179.97438 * 17 16 15
19 19 H 1.08001 * 120.00143 * 359.97438 * 18 17 16
20 20 C 1.37881 * 120.00302 * 179.97438 * 18 17 16
21 21 N 1.31513 * 119.99901 * 359.97438 * 20 18 17
22 22 Si 1.86794 * 120.00127 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.47230 * 0.02562 * 22 20 18
24 24 H 1.48497 * 109.47361 * 119.99936 * 22 20 18
25 25 H 1.48501 * 109.47491 * 240.00418 * 22 20 18
26 26 C 1.54699 * 101.94045 * 15.65240 * 9 5 4
27 27 O 1.36130 * 129.88453 * 179.55020 * 4 3 2
28 28 H 1.09001 * 109.47684 * 89.99424 * 1 2 3
29 29 H 1.09000 * 109.47242 * 210.00098 * 1 2 3
30 30 H 1.09001 * 109.47239 * 330.00125 * 1 2 3
31 31 H 1.08001 * 119.87744 * 359.97438 * 3 2 1
32 32 H 1.07995 * 119.98712 * 179.68872 * 6 5 4
33 33 H 1.09003 * 109.47074 * 90.00082 * 8 7 2
34 34 H 1.08990 * 109.47706 * 210.00627 * 8 7 2
35 35 H 1.09011 * 109.46744 * 330.00641 * 8 7 2
36 36 H 1.08993 * 109.47475 * 60.00347 * 14 13 11
37 37 H 1.09000 * 109.47147 * 300.00141 * 14 13 11
38 38 H 1.09004 * 109.46579 * 184.99602 * 15 14 13
39 39 H 1.08992 * 109.47046 * 304.99785 * 15 14 13
40 40 H 1.09007 * 109.47137 * 299.99376 * 17 16 15
41 41 H 1.08997 * 109.47704 * 59.99595 * 17 16 15
42 42 H 0.96993 * 119.99882 * 179.97438 * 21 20 18
43 43 H 1.09003 * 110.75059 * 92.98697 * 26 9 5
44 44 H 1.09004 * 110.74927 * 216.32165 * 26 9 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1932 1.1970 0.0000
4 6 3.5856 1.2071 -0.0005
5 6 4.2654 -0.0053 0.0065
6 6 3.5784 -1.1981 0.0042
7 6 2.1944 -1.1993 0.0005
8 6 1.4396 -2.5037 -0.0027
9 6 5.7470 0.3175 0.0190
10 1 6.1831 0.1838 -0.9710
11 6 6.4720 -0.5191 1.0415
12 8 5.8707 -1.3535 1.6755
13 8 7.7858 -0.3373 1.2478
14 6 8.4185 -1.1781 2.2483
15 6 9.9050 -0.8280 2.3425
16 8 10.0499 0.5089 2.8259
17 6 11.4072 0.9378 2.9510
18 6 11.4412 2.3540 3.4651
19 1 10.5185 2.8747 3.6748
20 6 12.6502 2.9851 3.6677
21 7 13.7738 2.3510 3.4128
22 14 12.6922 4.7408 4.3041
23 1 11.3040 5.2257 4.5113
24 1 13.4280 4.7825 5.5933
25 1 13.3780 5.6099 3.3144
26 6 5.7460 1.8101 0.4258
27 8 4.4509 2.2579 -0.0088
28 1 -0.3634 0.0001 -1.0276
29 1 -0.3634 -0.8900 0.5138
30 1 -0.3634 0.8900 0.5138
31 1 1.6484 2.1295 -0.0004
32 1 4.1195 -2.1327 0.0047
33 1 1.2603 -2.8172 -1.0312
34 1 2.0265 -3.2644 0.5119
35 1 0.4859 -2.3729 0.5088
36 1 8.3087 -2.2249 1.9654
37 1 7.9444 -1.0114 3.2155
38 1 10.3978 -1.5176 3.0280
39 1 10.3606 -0.9090 1.3557
40 1 11.9316 0.2850 3.6489
41 1 11.8936 0.8936 1.9766
42 1 14.6243 2.7951 3.5550
43 1 5.8488 1.9160 1.5058
44 1 6.5363 2.3524 -0.0932
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815241703.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:40:58
Heat of formation + Delta-G solvation = -164.449007 kcal
Electronic energy + Delta-G solvation = -26179.089126 eV
Core-core repulsion = 22254.175127 eV
Total energy + Delta-G solvation = -3924.913999 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.67065 -41.21646 -39.20864 -38.77907 -37.53702 -34.96082 -34.47946 -33.01258
-32.40977 -31.43910 -29.05194 -27.97173 -27.32859 -25.54429 -24.55316 -23.63127
-23.28831 -22.13482 -21.31166 -19.09972 -18.71379 -18.32463 -18.06087 -17.79957
-17.34168 -17.00397 -16.58730 -16.40183 -16.24921 -15.72244 -15.30528 -15.11345
-15.03017 -14.76788 -14.56281 -14.12501 -14.04027 -13.69729 -13.55288 -13.39567
-13.25172 -13.15737 -13.01297 -12.90700 -12.84339 -12.72852 -12.45719 -12.18285
-12.02887 -11.83797 -11.77004 -11.69699 -11.51450 -11.27651 -10.91238 -10.28537
-9.78742 -9.04222 -8.33424 -6.45193 0.14912 0.32659 0.93953 1.40281
1.41011 1.46357 1.55759 2.12729 2.33631 2.63213 2.99507 3.00734
3.03731 3.30435 3.56033 3.77347 3.88314 3.90869 3.93634 4.07300
4.21422 4.23259 4.31632 4.38453 4.43747 4.48666 4.51610 4.63634
4.70747 4.75724 4.77429 4.84643 4.94171 5.00564 5.12823 5.16566
5.20991 5.27564 5.28314 5.35322 5.53734 5.60386 5.69232 5.94161
6.11221 6.47508 6.54512 6.78631 7.26381 8.78889
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.020897 B = 0.002424 C = 0.002227
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1339.557404 B =11546.110906 C =12567.549851
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.048 4.048
3 C -0.147 4.147
4 C 0.087 3.913
5 C -0.183 4.183
6 C -0.052 4.052
7 C -0.124 4.124
8 C -0.109 4.109
9 C -0.067 4.067
10 H 0.156 0.844
11 C 0.474 3.526
12 O -0.520 6.520
13 O -0.351 6.351
14 C 0.078 3.922
15 C 0.053 3.947
16 O -0.408 6.408
17 C 0.208 3.792
18 C -0.548 4.548
19 H 0.060 0.940
20 C 0.007 3.993
21 N -0.929 5.929
22 Si 0.981 3.019
23 H -0.266 1.266
24 H -0.272 1.272
25 H -0.271 1.271
26 C 0.067 3.933
27 O -0.308 6.308
28 H 0.089 0.911
29 H 0.087 0.913
30 H 0.076 0.924
31 H 0.144 0.856
32 H 0.124 0.876
33 H 0.083 0.917
34 H 0.063 0.937
35 H 0.087 0.913
36 H 0.111 0.889
37 H 0.071 0.929
38 H 0.082 0.918
39 H 0.059 0.941
40 H -0.008 1.008
41 H -0.009 1.009
42 H 0.271 0.729
43 H 0.074 0.926
44 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.484 -8.169 -10.026 28.577
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.048 4.048
3 C -0.166 4.166
4 C 0.042 3.958
5 C -0.184 4.184
6 C -0.070 4.070
7 C -0.125 4.125
8 C -0.165 4.165
9 C -0.085 4.085
10 H 0.173 0.827
11 C 0.317 3.683
12 O -0.408 6.408
13 O -0.267 6.267
14 C 0.005 3.995
15 C -0.023 4.023
16 O -0.329 6.329
17 C 0.133 3.867
18 C -0.585 4.585
19 H 0.078 0.922
20 C -0.192 4.192
21 N -0.568 5.568
22 Si 0.804 3.196
23 H -0.190 1.190
24 H -0.197 1.197
25 H -0.196 1.196
26 C -0.008 4.008
27 O -0.223 6.223
28 H 0.107 0.893
29 H 0.105 0.895
30 H 0.095 0.905
31 H 0.161 0.839
32 H 0.142 0.858
33 H 0.101 0.899
34 H 0.082 0.918
35 H 0.105 0.895
36 H 0.129 0.871
37 H 0.089 0.911
38 H 0.100 0.900
39 H 0.077 0.923
40 H 0.010 0.990
41 H 0.009 0.991
42 H 0.080 0.920
43 H 0.092 0.908
44 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -25.620 -8.069 -9.812 28.597
hybrid contribution 1.287 0.298 0.481 1.406
sum -24.333 -7.771 -9.331 27.195
Atomic orbital electron populations
1.20962 0.88015 1.04275 1.03860 1.19865 0.97847 0.90831 0.96297
1.20376 0.89143 0.99930 1.07143 1.19789 0.92271 0.85767 0.97959
1.20296 0.92588 0.94837 1.10705 1.20326 0.93920 0.96311 0.96472
1.19999 0.92622 0.96716 1.03132 1.20836 1.00210 0.92144 1.03314
1.21226 0.92218 0.95276 0.99803 0.82700 1.23428 0.80734 0.81879
0.82279 1.90639 1.68025 1.34589 1.47578 1.86586 1.23441 1.60307
1.56381 1.23244 0.91284 0.94380 0.90615 1.22649 0.94157 0.85853
0.99669 1.87857 1.29053 1.29371 1.86583 1.19875 0.78158 0.94571
0.94109 1.21399 0.93349 0.98672 1.45104 0.92188 1.25931 0.94427
1.03600 0.95220 1.70059 0.98215 1.39511 1.49010 0.85158 0.78607
0.77596 0.78196 1.18969 1.19707 1.19576 1.23891 0.84549 0.90810
1.01502 1.86841 1.20173 1.32672 1.82582 0.89301 0.89474 0.90514
0.83855 0.85758 0.89892 0.91769 0.89478 0.87124 0.91087 0.89993
0.92313 0.99046 0.99126 0.92009 0.90788 0.83685
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.15 9.59 71.24 0.68 -0.46 16
2 C -0.05 -0.85 5.87 -19.93 -0.12 -0.97 16
3 C -0.15 -3.10 9.71 22.45 0.22 -2.88 16
4 C 0.09 2.21 7.04 22.69 0.16 2.37 16
5 C -0.18 -4.65 5.42 -19.52 -0.11 -4.76 16
6 C -0.05 -1.22 8.72 22.17 0.19 -1.02 16
7 C -0.12 -2.36 5.89 -19.83 -0.12 -2.48 16
8 C -0.11 -1.35 9.61 71.24 0.68 -0.66 16
9 C -0.07 -1.60 3.63 -11.40 -0.04 -1.65 16
10 H 0.16 2.93 8.14 -2.38 -0.02 2.91 16
11 C 0.47 13.78 7.19 71.24 0.51 14.29 16
12 O -0.52 -16.93 14.83 21.98 0.33 -16.60 16
13 O -0.35 -11.12 10.19 -48.70 -0.50 -11.61 16
14 C 0.08 2.35 5.85 71.98 0.42 2.77 16
15 C 0.05 1.88 6.33 71.98 0.46 2.34 16
16 O -0.41 -19.66 10.30 -145.58 -1.50 -21.16 16
17 C 0.21 11.47 5.69 71.24 0.41 11.87 16
18 C -0.55 -32.42 9.43 25.60 0.24 -32.18 16
19 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16
20 C 0.01 0.39 5.46 84.66 0.46 0.85 16
21 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16
22 Si 0.98 44.18 29.54 68.60 2.03 46.20 16
23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16
25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
26 C 0.07 1.62 7.54 72.56 0.55 2.17 16
27 O -0.31 -8.10 11.10 -95.03 -1.05 -9.16 16
28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16
29 H 0.09 0.65 5.94 -2.39 -0.01 0.64 16
30 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16
31 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16
32 H 0.12 2.85 7.72 -2.91 -0.02 2.82 16
33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
34 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16
35 H 0.09 0.78 5.94 -2.38 -0.01 0.76 16
36 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16
37 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16
38 H 0.08 2.58 8.14 -2.39 -0.02 2.57 16
39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
40 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16
41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16
42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16
43 H 0.07 1.94 7.91 -2.39 -0.02 1.93 16
44 H 0.15 2.86 8.14 -2.39 -0.02 2.84 16
Total: -1.00 -72.50 372.79 5.19 -67.31
By element:
Atomic # 1 Polarization: 9.30 SS G_CDS: 1.00 Total: 10.30 kcal
Atomic # 6 Polarization: -14.99 SS G_CDS: 4.60 Total: -10.39 kcal
Atomic # 7 Polarization: -55.17 SS G_CDS: 0.28 Total: -54.88 kcal
Atomic # 8 Polarization: -55.82 SS G_CDS: -2.72 Total: -58.54 kcal
Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal
Total: -72.50 5.19 -67.31 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815241703.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.138 kcal
(2) G-P(sol) polarization free energy of solvation -72.502 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.640 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) -164.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds