Wall clock time and date at job start Tue Mar 31 2020 12:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34710 * 117.00244 * 2 1 4 4 O 1.21465 * 119.99877 * 0.02562 * 3 2 1 5 5 C 1.47741 * 120.00320 * 179.97438 * 3 2 1 6 6 C 1.39762 * 120.07808 * 180.02562 * 5 3 2 7 7 C 1.38051 * 120.15066 * 179.97438 * 6 5 3 8 8 C 1.50700 * 119.84739 * 180.02562 * 7 6 5 9 9 C 1.38096 * 120.30650 * 359.97379 * 7 6 5 10 10 C 1.39723 * 120.14943 * 0.05027 * 9 7 6 11 11 C 1.47746 * 120.07221 * 179.97438 * 10 9 7 12 12 O 1.21465 * 120.00459 * 359.97438 * 11 10 9 13 13 O 1.34705 * 119.99575 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99881 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47245 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47449 * 300.00172 * 15 14 13 17 17 C 1.53001 * 109.46969 * 60.00090 * 15 14 13 18 18 C 1.50697 * 109.47221 * 180.02562 * 15 14 13 19 19 H 1.08002 * 120.00353 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99929 * 180.02562 * 18 15 14 21 21 N 1.31506 * 120.00114 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99896 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47211 * 89.99894 * 22 20 18 24 24 H 1.48497 * 109.47129 * 209.99989 * 22 20 18 25 25 H 1.48504 * 109.46877 * 329.99889 * 22 20 18 26 26 C 1.39335 * 120.07463 * 0.02562 * 5 3 2 27 27 H 1.08995 * 109.46880 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46753 * 299.99932 * 1 2 3 29 29 H 1.09001 * 109.46887 * 59.99848 * 1 2 3 30 30 H 1.07994 * 119.92445 * 0.02562 * 6 5 3 31 31 H 1.09002 * 109.47124 * 89.99767 * 8 7 6 32 32 H 1.08996 * 109.47138 * 209.99879 * 8 7 6 33 33 H 1.08996 * 109.47114 * 329.99915 * 8 7 6 34 34 H 1.08000 * 119.92371 * 180.02562 * 9 7 6 35 35 H 1.08990 * 109.47536 * 299.99845 * 14 13 11 36 36 H 1.09006 * 109.47213 * 59.99872 * 14 13 11 37 37 H 1.09003 * 109.46824 * 59.99372 * 16 15 14 38 38 H 1.08992 * 109.47666 * 179.97438 * 16 15 14 39 39 H 1.09003 * 109.47131 * 300.00246 * 16 15 14 40 40 H 1.09003 * 109.46906 * 60.00097 * 17 15 14 41 41 H 1.09005 * 109.46806 * 179.97438 * 17 15 14 42 42 H 1.08994 * 109.47170 * 299.99874 * 17 15 14 43 43 H 0.97007 * 120.00184 * 180.02562 * 21 20 18 44 44 H 1.08009 * 120.15352 * 359.73995 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.1752 2.5220 0.0011 7 6 5.5537 2.5960 0.0022 8 6 6.2326 3.9415 0.0033 9 6 6.3135 1.4429 0.0033 10 6 5.6907 0.1921 0.0022 11 6 6.5052 -1.0405 0.0028 12 8 7.7177 -0.9674 0.0037 13 8 5.9032 -2.2455 0.0023 14 6 6.7660 -3.4134 0.0024 15 6 5.9088 -4.6808 0.0025 16 6 5.0256 -4.6991 1.2516 17 6 5.0256 -4.6992 -1.2468 18 6 6.8042 -5.8929 0.0032 19 1 7.8774 -5.7715 0.0039 20 6 6.2534 -7.1569 0.0028 21 7 4.9466 -7.3047 0.0024 22 14 7.3633 -8.6594 0.0029 23 1 7.6570 -9.0577 1.4030 24 1 6.6824 -9.7779 -0.6975 25 1 8.6329 -8.3369 -0.6967 26 6 4.2994 0.1100 0.0006 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.5871 3.4278 0.0015 31 1 6.3954 4.2654 1.0313 32 1 7.1912 3.8652 -0.5098 33 1 5.6021 4.6670 -0.5106 34 1 7.3915 1.5080 0.0045 35 1 7.3954 -3.4003 -0.8873 36 1 7.3949 -3.4006 0.8926 37 1 4.3779 -3.8223 1.2516 38 1 4.4146 -5.6017 1.2515 39 1 5.6547 -4.6860 2.1417 40 1 5.6549 -4.6862 -2.1368 41 1 4.4153 -5.6023 -1.2470 42 1 4.3780 -3.8225 -1.2468 43 1 4.5591 -8.1940 0.0025 44 1 3.8129 -0.8543 0.0044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838858113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:29 Heat of formation + Delta-G solvation = -157.855448 kcal Electronic energy + Delta-G solvation = -26756.592884 eV Core-core repulsion = 22831.964802 eV Total energy + Delta-G solvation = -3924.628081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87861 -40.10600 -38.84584 -36.66823 -36.50641 -34.88502 -33.40334 -31.86199 -31.21030 -28.16812 -27.24845 -26.04154 -25.62520 -25.23178 -24.34807 -23.56059 -21.01381 -20.30178 -18.87129 -17.89585 -17.65706 -16.79101 -16.53657 -16.31203 -15.98860 -15.83640 -15.67529 -15.14722 -14.71389 -14.16442 -14.07229 -13.50611 -13.48685 -13.13905 -13.10822 -12.87507 -12.57550 -12.28842 -12.14682 -12.02638 -11.86654 -11.75996 -11.49312 -11.21139 -10.98617 -10.98201 -10.79284 -10.71810 -10.42755 -10.31257 -10.14114 -9.92735 -9.46019 -9.36508 -9.34061 -9.09651 -8.77210 -8.38651 -6.03114 -4.14746 0.29442 0.70529 2.10576 2.45772 2.78703 3.04848 3.27205 3.34235 3.38266 3.57911 4.30630 4.37142 4.44872 4.65058 4.82408 4.85724 4.94531 5.01755 5.02135 5.19928 5.23470 5.31031 5.38286 5.43412 5.47566 5.73608 5.84717 5.99782 6.03536 6.07860 6.10032 6.16752 6.40828 6.45291 6.71791 6.97353 6.98790 7.13463 7.13593 7.38824 7.50082 7.61368 7.69069 8.04396 8.08991 8.19095 8.37769 8.85055 9.50857 10.98041 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014826 B = 0.003268 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.088937 B = 8567.150176 C =10253.578264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.347 6.347 3 C 0.514 3.486 4 O -0.509 6.509 5 C -0.138 4.138 6 C -0.028 4.028 7 C -0.111 4.111 8 C -0.112 4.112 9 C -0.024 4.024 10 C -0.124 4.124 11 C 0.500 3.500 12 O -0.513 6.513 13 O -0.341 6.341 14 C 0.085 3.915 15 C 0.070 3.930 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.513 4.513 19 H 0.057 0.943 20 C 0.069 3.931 21 N -0.882 5.882 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.008 4.008 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.017 0.983 38 H 0.084 0.916 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.084 0.916 42 H 0.017 0.983 43 H 0.261 0.739 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 18.924 0.011 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.263 6.263 3 C 0.359 3.641 4 O -0.399 6.399 5 C -0.139 4.139 6 C -0.046 4.046 7 C -0.111 4.111 8 C -0.168 4.168 9 C -0.042 4.042 10 C -0.125 4.125 11 C 0.345 3.655 12 O -0.404 6.404 13 O -0.257 6.257 14 C 0.012 3.988 15 C 0.070 3.930 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.551 4.551 19 H 0.075 0.925 20 C -0.133 4.133 21 N -0.520 5.520 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.027 4.027 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.146 19.004 0.005 19.688 hybrid contribution 0.540 -0.928 0.017 1.074 sum -4.606 18.075 0.022 18.653 Atomic orbital electron populations 1.23334 0.75544 1.04249 1.02480 1.86606 1.23874 1.32032 1.83822 1.21064 0.88859 0.81663 0.72496 1.90819 1.66746 1.36073 1.46280 1.19018 0.89429 0.94604 1.10876 1.21344 0.94002 0.96858 0.92424 1.19770 0.92872 0.95963 1.02484 1.20791 1.00697 0.92405 1.02943 1.21476 1.01294 0.90010 0.91422 1.19255 0.93107 0.91826 1.08289 1.20957 0.86376 0.84807 0.73383 1.90798 1.15047 1.88234 1.46324 1.86571 1.42391 1.14473 1.82232 1.23749 0.92833 0.81389 1.00782 1.18257 0.92945 0.87964 0.93853 1.21772 0.99265 1.00897 0.96779 1.21771 0.99269 1.00902 0.96775 1.20932 0.92581 0.89839 1.51722 0.92489 1.24847 0.95063 0.98725 0.94658 1.69826 1.09564 1.22576 1.49998 0.86544 0.80689 0.82331 0.78146 1.20643 1.21160 1.19897 1.21919 0.92535 0.99258 0.88969 0.87527 0.91784 0.91776 0.83973 0.90665 0.90884 0.91025 0.83723 0.92328 0.92338 0.96401 0.89719 0.95838 0.95834 0.89714 0.96385 0.92898 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.25 9.81 -40.52 -0.40 -4.65 16 3 C 0.51 6.57 7.90 34.61 0.27 6.85 16 4 O -0.51 -7.17 16.13 -19.24 -0.31 -7.48 16 5 C -0.14 -1.67 5.87 -105.04 -0.62 -2.29 16 6 C -0.03 -0.29 9.24 -39.08 -0.36 -0.65 16 7 C -0.11 -1.06 5.87 -104.74 -0.61 -1.67 16 8 C -0.11 -0.72 10.00 36.01 0.36 -0.36 16 9 C -0.02 -0.28 9.24 -39.08 -0.36 -0.64 16 10 C -0.12 -1.74 5.87 -105.04 -0.62 -2.35 16 11 C 0.50 8.85 7.90 34.62 0.27 9.13 16 12 O -0.51 -10.06 16.13 -19.24 -0.31 -10.37 16 13 O -0.34 -6.67 8.12 -40.51 -0.33 -7.00 16 14 C 0.08 1.85 4.27 37.16 0.16 2.01 16 15 C 0.07 1.69 0.58 -155.66 -0.09 1.60 16 16 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 17 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 18 C -0.51 -13.53 8.01 -34.44 -0.28 -13.80 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.07 1.82 5.15 -17.82 -0.09 1.72 16 21 N -0.88 -23.64 9.35 55.43 0.52 -23.12 16 22 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.01 -0.11 9.18 -38.75 -0.36 -0.47 16 27 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.14 1.27 7.64 -52.49 -0.40 0.87 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.37 7.68 -51.93 -0.40 -0.02 16 38 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 42 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 43 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 44 H 0.16 2.17 7.15 -52.48 -0.38 1.80 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -29.90 373.49 -7.24 -37.14 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.37 Total: -0.71 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.65 Total: -5.04 kcal Atomic # 7 Polarization: -23.64 SS G_CDS: 0.52 Total: -23.12 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.35 Total: -29.50 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.90 -7.24 -37.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838858113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.716 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds