Wall clock time and date at job start Tue Mar 31 2020 12:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34710 * 117.00244 * 2 1 4 4 O 1.21465 * 119.99877 * 0.02562 * 3 2 1 5 5 C 1.47741 * 120.00320 * 179.97438 * 3 2 1 6 6 C 1.39762 * 120.07808 * 180.02562 * 5 3 2 7 7 C 1.38051 * 120.15066 * 179.97438 * 6 5 3 8 8 C 1.50700 * 119.84739 * 180.02562 * 7 6 5 9 9 C 1.38096 * 120.30650 * 359.97379 * 7 6 5 10 10 C 1.39723 * 120.14943 * 0.05027 * 9 7 6 11 11 C 1.47746 * 120.07221 * 179.97438 * 10 9 7 12 12 O 1.21465 * 120.00459 * 359.97438 * 11 10 9 13 13 O 1.34705 * 119.99575 * 179.97438 * 11 10 9 14 14 C 1.45201 * 116.99881 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47245 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47449 * 300.00172 * 15 14 13 17 17 C 1.53001 * 109.46969 * 60.00090 * 15 14 13 18 18 C 1.50697 * 109.47221 * 180.02562 * 15 14 13 19 19 H 1.08002 * 120.00353 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99929 * 180.02562 * 18 15 14 21 21 N 1.31506 * 120.00114 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99896 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47211 * 89.99894 * 22 20 18 24 24 H 1.48497 * 109.47129 * 209.99989 * 22 20 18 25 25 H 1.48504 * 109.46877 * 329.99889 * 22 20 18 26 26 C 1.39335 * 120.07463 * 0.02562 * 5 3 2 27 27 H 1.08995 * 109.46880 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46753 * 299.99932 * 1 2 3 29 29 H 1.09001 * 109.46887 * 59.99848 * 1 2 3 30 30 H 1.07994 * 119.92445 * 0.02562 * 6 5 3 31 31 H 1.09002 * 109.47124 * 89.99767 * 8 7 6 32 32 H 1.08996 * 109.47138 * 209.99879 * 8 7 6 33 33 H 1.08996 * 109.47114 * 329.99915 * 8 7 6 34 34 H 1.08000 * 119.92371 * 180.02562 * 9 7 6 35 35 H 1.08990 * 109.47536 * 299.99845 * 14 13 11 36 36 H 1.09006 * 109.47213 * 59.99872 * 14 13 11 37 37 H 1.09003 * 109.46824 * 59.99372 * 16 15 14 38 38 H 1.08992 * 109.47666 * 179.97438 * 16 15 14 39 39 H 1.09003 * 109.47131 * 300.00246 * 16 15 14 40 40 H 1.09003 * 109.46906 * 60.00097 * 17 15 14 41 41 H 1.09005 * 109.46806 * 179.97438 * 17 15 14 42 42 H 1.08994 * 109.47170 * 299.99874 * 17 15 14 43 43 H 0.97007 * 120.00184 * 180.02562 * 21 20 18 44 44 H 1.08009 * 120.15352 * 359.73995 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.1752 2.5220 0.0011 7 6 5.5537 2.5960 0.0022 8 6 6.2326 3.9415 0.0033 9 6 6.3135 1.4429 0.0033 10 6 5.6907 0.1921 0.0022 11 6 6.5052 -1.0405 0.0028 12 8 7.7177 -0.9674 0.0037 13 8 5.9032 -2.2455 0.0023 14 6 6.7660 -3.4134 0.0024 15 6 5.9088 -4.6808 0.0025 16 6 5.0256 -4.6991 1.2516 17 6 5.0256 -4.6992 -1.2468 18 6 6.8042 -5.8929 0.0032 19 1 7.8774 -5.7715 0.0039 20 6 6.2534 -7.1569 0.0028 21 7 4.9466 -7.3047 0.0024 22 14 7.3633 -8.6594 0.0029 23 1 7.6570 -9.0577 1.4030 24 1 6.6824 -9.7779 -0.6975 25 1 8.6329 -8.3369 -0.6967 26 6 4.2994 0.1100 0.0006 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.5871 3.4278 0.0015 31 1 6.3954 4.2654 1.0313 32 1 7.1912 3.8652 -0.5098 33 1 5.6021 4.6670 -0.5106 34 1 7.3915 1.5080 0.0045 35 1 7.3954 -3.4003 -0.8873 36 1 7.3949 -3.4006 0.8926 37 1 4.3779 -3.8223 1.2516 38 1 4.4146 -5.6017 1.2515 39 1 5.6547 -4.6860 2.1417 40 1 5.6549 -4.6862 -2.1368 41 1 4.4153 -5.6023 -1.2470 42 1 4.3780 -3.8225 -1.2468 43 1 4.5591 -8.1940 0.0025 44 1 3.8129 -0.8543 0.0044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838858113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:29 Heat of formation + Delta-G solvation = -171.229050 kcal Electronic energy + Delta-G solvation = -26757.172806 eV Core-core repulsion = 22831.964802 eV Total energy + Delta-G solvation = -3925.208004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92044 -41.38291 -39.91408 -38.25092 -37.54849 -36.63348 -34.25479 -33.28511 -32.75299 -28.90250 -28.13377 -27.55801 -27.55769 -27.15365 -25.43481 -24.73511 -21.99053 -21.50916 -20.71456 -18.98946 -18.75738 -18.04381 -17.74288 -17.47958 -17.34345 -17.24776 -17.13236 -16.53197 -16.14085 -15.07865 -15.04956 -14.88653 -14.62067 -14.60013 -14.25844 -14.23760 -13.66046 -13.35974 -13.24767 -13.12811 -12.97538 -12.96969 -12.81288 -12.79681 -12.70230 -12.61789 -12.32284 -12.12935 -11.84566 -11.84156 -11.73180 -11.64627 -11.28256 -11.19734 -10.72889 -10.39649 -10.36243 -9.95279 -8.03629 -6.21660 -0.66946 -0.28404 1.10145 1.44074 1.45647 1.53828 1.59733 1.59919 1.68310 2.45933 2.56845 3.19973 3.33355 3.58582 3.65228 3.94877 4.00401 4.06958 4.22793 4.26644 4.27522 4.30358 4.34526 4.56423 4.64063 4.71089 4.73211 4.84978 4.87995 4.92396 5.06154 5.09171 5.19167 5.20827 5.21967 5.24541 5.30327 5.37274 5.53716 5.58119 5.65164 5.65766 6.08952 6.18792 6.37834 6.55592 6.65797 6.83337 7.46326 8.95961 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.014826 B = 0.003268 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.088937 B = 8567.150176 C =10253.578264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.515 3.485 4 O -0.525 6.525 5 C -0.145 4.145 6 C -0.017 4.017 7 C -0.096 4.096 8 C -0.112 4.112 9 C -0.021 4.021 10 C -0.141 4.141 11 C 0.500 3.500 12 O -0.537 6.537 13 O -0.346 6.346 14 C 0.097 3.903 15 C 0.061 3.939 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.534 4.534 19 H 0.050 0.950 20 C 0.029 3.971 21 N -0.899 5.899 22 Si 0.952 3.048 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.012 4.012 27 H 0.126 0.874 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.162 0.838 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 20.800 0.020 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.361 3.639 4 O -0.417 6.417 5 C -0.146 4.146 6 C -0.035 4.035 7 C -0.096 4.096 8 C -0.168 4.168 9 C -0.040 4.040 10 C -0.142 4.142 11 C 0.347 3.653 12 O -0.429 6.429 13 O -0.261 6.261 14 C 0.024 3.976 15 C 0.061 3.939 16 C -0.176 4.176 17 C -0.176 4.176 18 C -0.572 4.572 19 H 0.068 0.932 20 C -0.171 4.171 21 N -0.537 5.537 22 Si 0.778 3.222 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.030 4.030 27 H 0.144 0.856 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.179 0.821 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.170 0.830 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.187 20.885 0.015 21.519 hybrid contribution 0.489 -1.408 0.016 1.490 sum -4.697 19.477 0.030 20.036 Atomic orbital electron populations 1.23616 0.73869 1.05812 1.03051 1.86599 1.25677 1.31895 1.83531 1.21152 0.89069 0.81605 0.72035 1.90804 1.67102 1.36464 1.47288 1.19080 0.89170 0.94945 1.11372 1.21643 0.94481 0.96762 0.90616 1.20089 0.92484 0.96759 1.00288 1.20911 1.01140 0.90544 1.04232 1.21643 1.01874 0.89599 0.90835 1.19084 0.93037 0.90912 1.11135 1.21565 0.86555 0.84947 0.72248 1.90777 1.16105 1.88382 1.47634 1.86555 1.42036 1.14784 1.82755 1.23333 0.92341 0.81761 1.00192 1.18273 0.93073 0.88502 0.94047 1.21618 0.98983 1.00467 0.96517 1.21617 0.98989 1.00470 0.96515 1.21201 0.92645 0.91158 1.52222 0.93173 1.25492 0.96253 1.00993 0.94376 1.69937 1.10594 1.23068 1.50080 0.85660 0.79098 0.79359 0.78114 1.20315 1.20747 1.19782 1.21760 0.92230 0.99397 0.89619 0.85570 0.91229 0.91219 0.82053 0.89263 0.89963 0.89321 0.83030 0.92933 0.92923 0.94884 0.91795 0.96164 0.96155 0.91792 0.94870 0.92845 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -8.59 9.81 -56.20 -0.55 -9.14 16 3 C 0.52 12.65 7.90 70.33 0.56 13.20 16 4 O -0.53 -14.06 16.13 19.95 0.32 -13.74 16 5 C -0.14 -3.30 5.87 -20.13 -0.12 -3.42 16 6 C -0.02 -0.31 9.24 22.59 0.21 -0.10 16 7 C -0.10 -1.56 5.87 -19.94 -0.12 -1.67 16 8 C -0.11 -1.01 10.00 71.24 0.71 -0.30 16 9 C -0.02 -0.46 9.24 22.60 0.21 -0.25 16 10 C -0.14 -3.87 5.87 -20.13 -0.12 -3.99 16 11 C 0.50 17.76 7.90 70.34 0.56 18.32 16 12 O -0.54 -21.15 16.13 19.95 0.32 -20.82 16 13 O -0.35 -13.62 8.12 -56.15 -0.46 -14.07 16 14 C 0.10 4.28 4.27 71.98 0.31 4.59 16 15 C 0.06 2.99 0.58 -52.93 -0.03 2.96 16 16 C -0.12 -5.63 8.11 71.98 0.58 -5.05 16 17 C -0.12 -5.63 8.11 71.98 0.58 -5.05 16 18 C -0.53 -28.51 8.01 25.60 0.21 -28.31 16 19 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 20 C 0.03 1.54 5.15 84.66 0.44 1.97 16 21 N -0.90 -48.57 9.35 21.45 0.20 -48.37 16 22 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.01 -0.30 9.18 22.81 0.21 -0.09 16 27 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.16 2.32 7.64 -2.91 -0.02 2.30 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 33 H 0.09 0.56 8.08 -2.39 -0.02 0.54 16 34 H 0.15 3.02 7.64 -2.91 -0.02 3.00 16 35 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 38 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 3.32 6.07 -2.38 -0.01 3.30 16 42 H 0.03 1.42 7.68 -2.39 -0.02 1.41 16 43 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 44 H 0.15 4.09 7.15 -2.91 -0.02 4.07 16 Total: -1.00 -63.76 373.49 8.24 -55.52 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.00 Total: 11.74 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.38 Total: -5.50 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.20 Total: -48.37 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -0.36 Total: -57.78 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -63.76 8.24 -55.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838858113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.710 kcal (2) G-P(sol) polarization free energy of solvation -63.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds