Wall clock time and date at job start Tue Mar 31 2020 12:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 120.00387 * 2 1 4 4 H 1.48504 * 109.46948 * 239.99813 * 3 2 1 5 5 H 1.48495 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47176 * 120.00482 * 3 2 1 7 7 C 1.38664 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00235 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99654 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99977 * 185.05865 * 9 7 2 11 11 C 1.38901 * 120.06355 * 354.48703 * 10 9 7 12 12 C 1.38076 * 119.92603 * 179.97438 * 11 10 9 13 13 C 1.38330 * 120.07085 * 359.74430 * 12 11 10 14 14 C 1.38272 * 120.13527 * 0.50735 * 13 12 11 15 15 C 1.50707 * 119.96543 * 179.76807 * 14 13 12 16 16 C 1.50700 * 109.46923 * 269.72693 * 15 14 13 17 17 O 1.20820 * 120.00196 * 359.97438 * 16 15 14 18 18 O 1.34234 * 119.99823 * 179.97438 * 16 15 14 19 19 C 1.45193 * 116.99988 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47038 * 180.02562 * 19 18 16 21 21 C 1.53004 * 109.47361 * 180.02562 * 20 19 18 22 22 O 1.42907 * 112.90670 * 53.74472 * 21 20 19 23 23 C 1.53780 * 113.61296 * 282.50048 * 21 20 19 24 24 C 1.53785 * 87.07884 * 220.01472 * 23 21 20 25 25 C 1.53781 * 87.08171 * 25.43329 * 24 23 21 26 26 C 1.38121 * 120.07200 * 359.49391 * 14 13 12 27 27 H 0.96999 * 119.99463 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03839 * 359.95454 * 11 10 9 29 29 H 1.08007 * 119.96576 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.92965 * 180.28258 * 13 12 11 31 31 H 1.08996 * 109.47095 * 149.72536 * 15 14 13 32 32 H 1.08998 * 109.46701 * 29.72467 * 15 14 13 33 33 H 1.09009 * 109.47185 * 60.00685 * 19 18 16 34 34 H 1.08999 * 109.47860 * 300.00058 * 19 18 16 35 35 H 1.09000 * 109.47397 * 60.00162 * 20 19 18 36 36 H 1.09000 * 109.47274 * 300.00063 * 20 19 18 37 37 H 0.96696 * 114.00072 * 311.25596 * 22 21 20 38 38 H 1.09002 * 113.61342 * 334.55984 * 23 21 20 39 39 H 1.08998 * 113.61787 * 105.47066 * 23 21 20 40 40 H 1.08997 * 113.61562 * 270.88301 * 24 23 21 41 41 H 1.09002 * 113.61140 * 139.97594 * 24 23 21 42 42 H 1.09000 * 113.61367 * 220.01930 * 25 24 23 43 43 H 1.08998 * 113.61994 * 89.11271 * 25 24 23 44 44 H 1.08003 * 120.03558 * 180.22948 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6962 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3346 -2.3685 -0.0016 10 6 2.0697 -3.5048 0.1046 11 6 3.4571 -3.4396 0.0927 12 6 4.2021 -4.5971 0.2014 13 6 3.5681 -5.8201 0.3274 14 6 2.1871 -5.8887 0.3343 15 6 1.5004 -7.2237 0.4665 16 6 1.2653 -7.8055 -0.9036 17 8 1.6187 -7.1982 -1.8866 18 8 0.6634 -8.9984 -1.0320 19 6 0.4692 -9.4969 -2.3818 20 6 -0.2273 -10.8581 -2.3275 21 6 -0.4314 -11.3837 -3.7498 22 8 0.7785 -11.4166 -4.5096 23 6 -1.6052 -10.7203 -4.4892 24 6 -1.9344 -12.1126 -5.0530 25 6 -1.2344 -12.6937 -3.8131 26 6 1.4363 -4.7345 0.2259 27 1 -0.4849 0.8401 0.0004 28 1 3.9527 -2.4847 -0.0018 29 1 5.2809 -4.5472 0.1918 30 1 4.1530 -6.7236 0.4168 31 1 0.5449 -7.0921 0.9742 32 1 2.1293 -7.9000 1.0454 33 1 1.4367 -9.6028 -2.8727 34 1 -0.1482 -8.7955 -2.9430 35 1 -1.1948 -10.7519 -1.8367 36 1 0.3897 -11.5598 -1.7662 37 1 1.2879 -10.5955 -4.4736 38 1 -2.3733 -10.3258 -3.8239 39 1 -1.2936 -10.0040 -5.2494 40 1 -1.4226 -12.3370 -5.9887 41 1 -3.0026 -12.3266 -5.0917 42 1 -0.6234 -13.5705 -4.0275 43 1 -1.9010 -12.8387 -2.9630 44 1 0.3576 -4.7884 0.2351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840388187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:59 Heat of formation + Delta-G solvation = -122.864152 kcal Electronic energy + Delta-G solvation = -25718.260059 eV Core-core repulsion = 21795.149315 eV Total energy + Delta-G solvation = -3923.110745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63637 -39.98702 -38.97131 -36.95236 -36.17126 -35.05819 -32.57960 -32.22138 -31.75012 -29.27306 -27.53326 -26.27997 -25.47898 -25.13036 -22.35031 -21.78363 -21.50775 -20.36745 -20.06603 -17.83570 -17.68128 -17.03304 -16.77644 -16.68484 -16.26234 -15.54278 -15.30241 -15.15876 -14.80623 -14.42814 -14.33114 -14.01948 -13.61896 -13.53522 -13.23969 -12.89756 -12.77537 -12.59992 -12.47217 -11.99739 -11.94503 -11.75577 -11.56439 -11.50653 -11.28515 -11.26098 -10.88024 -10.82655 -10.69034 -10.67873 -10.65757 -10.47071 -10.29496 -10.03301 -9.35882 -8.83745 -8.13419 -7.24858 -6.44256 -4.03470 1.93754 2.32235 2.35535 2.74232 3.13635 3.14817 3.17363 3.59643 3.96827 4.04936 4.18450 4.37490 4.42647 4.55699 4.63592 4.75345 4.83466 4.95969 5.03437 5.09208 5.13837 5.27143 5.28418 5.36519 5.43014 5.46827 5.54156 5.56168 5.62149 5.68366 5.72262 5.85239 5.89830 5.95437 6.14163 6.30456 6.39185 6.63153 6.88175 7.05024 7.20886 7.21085 7.33988 7.41777 7.78237 7.85713 8.00363 9.01201 9.71083 10.73778 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.002157 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.015716 B =12978.142367 C =13745.293341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.227 4.227 12 C -0.074 4.074 13 C -0.195 4.195 14 C -0.044 4.044 15 C -0.064 4.064 16 C 0.460 3.540 17 O -0.489 6.489 18 O -0.361 6.361 19 C 0.063 3.937 20 C -0.137 4.137 21 C 0.110 3.890 22 O -0.543 6.543 23 C -0.169 4.169 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.173 4.173 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.380 0.620 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -22.208 -3.470 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.100 3.900 11 C -0.246 4.246 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.045 4.045 15 C -0.101 4.101 16 C 0.302 3.698 17 O -0.374 6.374 18 O -0.279 6.279 19 C -0.011 4.011 20 C -0.175 4.175 21 C 0.068 3.932 22 O -0.350 6.350 23 C -0.207 4.207 24 C -0.173 4.173 25 C -0.162 4.162 26 C -0.192 4.192 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.457 -22.407 -3.962 22.801 hybrid contribution 0.766 1.499 -0.076 1.685 sum -0.691 -20.908 -4.037 21.305 Atomic orbital electron populations 1.70030 1.05953 1.27752 1.46096 1.25288 0.95851 0.98816 0.96567 0.85780 0.78693 0.79767 0.79181 1.19507 1.20286 1.19498 1.21275 0.91770 0.80817 1.52975 0.89125 1.83977 1.34232 1.11368 1.78553 1.19267 0.90266 0.87978 0.92474 1.21207 0.93825 0.99047 1.10537 1.20695 0.98485 0.92250 0.97826 1.20372 0.93174 0.97109 1.10775 1.18659 0.93352 0.91501 1.00947 1.20266 1.03628 0.95212 0.91020 1.23884 0.74304 0.78551 0.93107 1.90722 1.46548 1.59661 1.40433 1.86495 1.72669 1.36353 1.32348 1.22926 1.00818 0.95412 0.81994 1.22132 1.02686 0.95216 0.97452 1.22184 0.84691 0.97651 0.88634 1.86484 1.34898 1.41624 1.71965 1.23686 0.98670 0.97649 1.00710 1.22753 1.00564 0.95941 0.98008 1.23028 0.97808 0.96309 0.99065 1.19963 0.99152 0.89980 1.10126 0.91986 0.85488 0.87303 0.87739 0.87014 0.87148 0.91424 0.90926 0.89335 0.89842 0.77045 0.89074 0.90704 0.89777 0.91202 0.90430 0.88632 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.14 9.76 0.04 0.00 -5.14 16 10 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.23 -5.03 9.17 -39.40 -0.36 -5.39 16 12 C -0.07 -1.39 10.04 -39.61 -0.40 -1.79 16 13 C -0.20 -3.43 9.70 -39.53 -0.38 -3.82 16 14 C -0.04 -0.79 4.37 -104.65 -0.46 -1.25 16 15 C -0.06 -0.85 5.94 -29.03 -0.17 -1.02 16 16 C 0.46 6.75 7.95 36.01 0.29 7.04 16 17 O -0.49 -9.00 15.78 -18.75 -0.30 -9.30 16 18 O -0.36 -4.41 10.22 -39.27 -0.40 -4.81 16 19 C 0.06 0.63 5.03 37.16 0.19 0.82 16 20 C -0.14 -1.06 5.23 -26.73 -0.14 -1.20 16 21 C 0.11 0.86 1.39 -89.81 -0.12 0.73 16 22 O -0.54 -4.90 13.40 -35.23 -0.47 -5.37 16 23 C -0.17 -1.26 7.32 -25.92 -0.19 -1.45 16 24 C -0.14 -0.93 8.02 -25.92 -0.21 -1.14 16 25 C -0.12 -0.85 7.47 -25.92 -0.19 -1.04 16 26 C -0.17 -3.71 9.65 -39.40 -0.38 -4.09 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 29 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.11 1.28 8.08 -51.93 -0.42 0.86 16 32 H 0.11 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.07 0.65 6.71 -51.92 -0.35 0.30 16 34 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 35 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.38 2.61 7.13 45.56 0.32 2.93 16 38 H 0.09 0.61 8.04 -51.93 -0.42 0.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 44 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -33.88 372.89 -8.04 -41.91 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.62 Total: 6.07 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.60 Total: -19.87 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.76 Total: -24.71 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -1.17 Total: -24.62 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.88 -8.04 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840388187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.953 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds