Wall clock time and date at job start Tue Mar 31 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86803 * 119.99523 * 2 1 4 4 H 1.48496 * 109.47171 * 270.00098 * 3 2 1 5 5 H 1.48498 * 109.47281 * 30.00203 * 3 2 1 6 6 H 1.48500 * 109.46816 * 150.00097 * 3 2 1 7 7 C 1.38656 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99742 * 0.02562 * 7 2 1 9 9 O 1.34830 * 119.99737 * 179.97438 * 7 2 1 10 10 C 1.35760 * 116.99441 * 174.93864 * 9 7 2 11 11 C 1.38933 * 120.03686 * 185.62334 * 10 9 7 12 12 C 1.38114 * 120.04035 * 179.97438 * 11 10 9 13 13 C 1.38235 * 120.12061 * 359.78974 * 12 11 10 14 14 C 1.38782 * 120.08331 * 0.46469 * 13 12 11 15 15 O 1.35921 * 120.02484 * 179.78967 * 14 13 12 16 16 C 1.34262 * 117.00107 * 255.02300 * 15 14 13 17 17 O 1.20829 * 119.99941 * 355.00488 * 16 15 14 18 18 C 1.50703 * 120.00016 * 175.01235 * 16 15 14 19 19 O 1.42896 * 109.46878 * 179.97438 * 18 16 15 20 20 C 1.42900 * 113.99766 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47227 * 179.97438 * 20 19 18 22 22 C 1.54262 * 110.03361 * 292.91331 * 21 20 19 23 23 C 1.54963 * 104.16005 * 217.13572 * 22 21 20 24 24 C 1.54895 * 102.77768 * 37.88333 * 23 22 21 25 25 C 1.53873 * 110.03063 * 175.69102 * 21 20 19 26 26 C 1.38619 * 119.95566 * 359.51605 * 14 13 12 27 27 H 0.96989 * 120.00670 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.98551 * 359.97438 * 11 10 9 29 29 H 1.07993 * 119.94043 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.96039 * 180.22992 * 13 12 11 31 31 H 1.08997 * 109.47021 * 59.99310 * 18 16 15 32 32 H 1.09005 * 109.46800 * 299.99312 * 18 16 15 33 33 H 1.08998 * 109.47391 * 300.00265 * 20 19 18 34 34 H 1.09001 * 109.46843 * 59.99935 * 20 19 18 35 35 H 1.09001 * 110.01059 * 54.30360 * 21 20 19 36 36 H 1.09003 * 110.48614 * 335.78248 * 22 21 20 37 37 H 1.08994 * 110.49188 * 98.42517 * 22 21 20 38 38 H 1.08997 * 110.71872 * 279.57727 * 23 22 21 39 39 H 1.08999 * 110.92920 * 156.29396 * 23 22 21 40 40 H 1.09000 * 110.48791 * 203.40721 * 24 23 22 41 41 H 1.09002 * 110.59555 * 80.81851 * 24 23 22 42 42 H 1.08997 * 110.03354 * 238.57050 * 25 21 20 43 43 H 1.09000 * 110.03669 * 359.95685 * 25 21 20 44 44 H 1.07991 * 120.06033 * 180.23525 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0466 -1.4000 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4690 -2.1361 -0.0014 9 8 3.3572 -1.2006 -0.0011 10 6 3.9736 -2.4055 0.1052 11 6 5.3559 -2.4710 0.2287 12 6 5.9830 -3.6967 0.3373 13 6 5.2374 -4.8607 0.3277 14 6 3.8568 -4.8014 0.1992 15 8 3.1252 -5.9469 0.1857 16 6 2.6428 -6.3480 -1.0014 17 8 2.7888 -5.6529 -1.9789 18 6 1.9192 -7.6651 -1.1145 19 8 1.5045 -7.8660 -2.4671 20 6 0.8054 -9.0932 -2.6845 21 6 0.4113 -9.2015 -4.1589 22 6 -0.6400 -8.1270 -4.5052 23 6 -1.5925 -8.8356 -5.5011 24 6 -1.6765 -10.2733 -4.9308 25 6 -0.2471 -10.5657 -4.4297 26 6 3.2239 -3.5730 0.0904 27 1 -0.4850 0.8399 -0.0004 28 1 5.9405 -1.5630 0.2399 29 1 7.0576 -3.7458 0.4337 30 1 5.7302 -5.8176 0.4166 31 1 1.0446 -7.6561 -0.4641 32 1 2.5866 -8.4732 -0.8148 33 1 1.4500 -9.9308 -2.4178 34 1 -0.0921 -9.1145 -2.0663 35 1 1.2915 -9.0798 -4.7902 36 1 -1.1824 -7.8216 -3.6103 37 1 -0.1652 -7.2667 -4.9767 38 1 -1.1661 -8.8424 -6.5041 39 1 -2.5748 -8.3631 -5.5037 40 1 -1.9582 -10.9782 -5.7131 41 1 -2.3867 -10.3174 -4.1051 42 1 0.3130 -11.1056 -5.1931 43 1 -0.2852 -11.1509 -3.5109 44 1 2.1494 -3.5247 -0.0058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:40 Heat of formation + Delta-G solvation = -130.705818 kcal Electronic energy + Delta-G solvation = -26036.859553 eV Core-core repulsion = 22113.408769 eV Total energy + Delta-G solvation = -3923.450785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94986 -39.23425 -38.85833 -37.57208 -36.67957 -35.79484 -32.41742 -31.03910 -29.98964 -29.27158 -28.93131 -28.05720 -25.35454 -24.58168 -22.98845 -21.59864 -20.92151 -20.66609 -19.91439 -18.21852 -18.08244 -17.31057 -16.86972 -16.69188 -16.11246 -15.78902 -15.35944 -15.32728 -15.21786 -14.46194 -14.13708 -13.93685 -13.71785 -13.57153 -13.49623 -13.15846 -12.72378 -12.44406 -12.26879 -12.12793 -11.64119 -11.55590 -11.39404 -11.38289 -11.22963 -11.12998 -11.01128 -10.83924 -10.81660 -10.68447 -10.45554 -10.31878 -10.19682 -9.93585 -9.53650 -8.91502 -8.26950 -7.51970 -6.44673 -4.12355 1.59206 2.08835 2.29673 2.63244 3.21348 3.24454 3.38106 3.75609 4.21040 4.33758 4.34868 4.36200 4.54907 4.70712 4.80461 4.87083 4.93149 5.00941 5.04173 5.06839 5.14768 5.20597 5.35364 5.40240 5.45834 5.48764 5.53244 5.63482 5.68277 5.74542 5.84914 5.86962 6.02738 6.05344 6.11281 6.18694 6.22131 6.36923 6.78494 6.83126 6.92947 6.99680 7.05696 7.42420 7.71660 7.95823 8.11886 8.89225 9.47597 10.62677 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012949 B = 0.002791 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.875775 B =10028.411860 C =11770.277722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.105 0.895 9 O -0.209 6.209 10 C 0.169 3.831 11 C -0.185 4.185 12 C -0.067 4.067 13 C -0.203 4.203 14 C 0.120 3.880 15 O -0.295 6.295 16 C 0.451 3.549 17 O -0.460 6.460 18 C 0.077 3.923 19 O -0.364 6.364 20 C 0.069 3.931 21 C -0.092 4.092 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.217 4.217 27 H 0.281 0.719 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 -20.830 -4.468 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.123 0.877 9 O -0.114 6.114 10 C 0.117 3.883 11 C -0.204 4.204 12 C -0.085 4.085 13 C -0.222 4.222 14 C 0.079 3.921 15 O -0.211 6.211 16 C 0.292 3.708 17 O -0.342 6.342 18 C 0.000 4.000 19 O -0.283 6.283 20 C -0.007 4.007 21 C -0.110 4.110 22 C -0.154 4.154 23 C -0.165 4.165 24 C -0.163 4.163 25 C -0.155 4.155 26 C -0.236 4.236 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.266 -20.074 -4.955 20.715 hybrid contribution 0.021 0.507 0.223 0.555 sum 1.287 -19.567 -4.732 20.172 Atomic orbital electron populations 1.69641 1.05606 1.28631 1.47378 1.24477 0.95050 0.98888 0.95443 0.86159 0.80314 0.81244 0.79070 1.19758 1.20697 1.18249 1.20766 0.76703 0.96726 1.52496 0.87725 1.83589 1.22796 1.25167 1.79836 1.18850 0.91543 0.85044 0.92909 1.20336 0.91866 0.98277 1.09961 1.20490 0.98762 0.91026 0.98236 1.20567 0.91332 0.98775 1.11551 1.18198 0.89394 0.82878 1.01611 1.84460 1.63040 1.40217 1.33417 1.23463 0.77934 0.87904 0.81514 1.90761 1.52179 1.53802 1.37497 1.21593 0.99516 0.92549 0.86360 1.87996 1.75704 1.40156 1.24410 1.22785 0.95356 0.85536 0.97068 1.21772 0.99340 0.95395 0.94507 1.22399 0.95983 0.97644 0.99364 1.22544 0.99708 0.95320 0.98960 1.22363 0.96523 0.97030 1.00337 1.22129 0.96125 0.96003 1.01216 1.21335 1.01774 0.91063 1.09457 0.90923 0.85820 0.85743 0.86483 0.88785 0.88925 0.92966 0.92697 0.89974 0.91340 0.91007 0.91555 0.91517 0.91747 0.91608 0.91387 0.91621 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.48 0.77 -24.83 16 2 C 0.07 1.86 5.49 -17.52 -0.10 1.76 16 3 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.39 -11.32 9.95 30.89 0.31 -11.02 16 8 H 0.11 3.15 5.44 -52.49 -0.29 2.86 16 9 O -0.21 -5.63 8.59 0.02 0.00 -5.63 16 10 C 0.17 4.05 6.65 -39.13 -0.26 3.79 16 11 C -0.19 -3.68 9.99 -39.37 -0.39 -4.07 16 12 C -0.07 -1.14 10.03 -39.63 -0.40 -1.54 16 13 C -0.20 -3.61 9.99 -39.38 -0.39 -4.00 16 14 C 0.12 2.44 5.18 -39.24 -0.20 2.24 16 15 O -0.30 -5.31 10.03 -23.60 -0.24 -5.55 16 16 C 0.45 7.82 7.90 36.01 0.28 8.10 16 17 O -0.46 -10.02 15.93 -25.48 -0.41 -10.43 16 18 C 0.08 0.92 6.53 36.01 0.24 1.15 16 19 O -0.36 -4.84 9.71 -55.18 -0.54 -5.37 16 20 C 0.07 0.64 4.98 37.16 0.19 0.82 16 21 C -0.09 -0.83 3.19 -89.50 -0.29 -1.12 16 22 C -0.12 -1.18 6.22 -25.03 -0.16 -1.34 16 23 C -0.13 -1.05 6.91 -24.70 -0.17 -1.22 16 24 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 25 C -0.12 -0.81 6.46 -25.61 -0.17 -0.97 16 26 C -0.22 -5.08 8.58 -39.25 -0.34 -5.41 16 27 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.44 8.02 -51.93 -0.42 0.03 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.73 7.77 -51.93 -0.40 0.32 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.39 7.67 -51.93 -0.40 -0.01 16 44 H 0.14 3.49 5.64 -52.49 -0.30 3.19 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -33.23 371.46 -8.12 -41.35 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.43 Total: 1.78 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.02 Total: -13.86 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.77 Total: -24.83 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.18 Total: -26.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.23 -8.12 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.353 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds