Wall clock time and date at job start Tue Mar 31 2020 12:06:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86799 * 120.00257 * 2 1
4 4 H 1.48500 * 109.47184 * 269.99706 * 3 2 1
5 5 H 1.48502 * 109.46925 * 29.99324 * 3 2 1
6 6 H 1.48497 * 109.47344 * 149.99319 * 3 2 1
7 7 C 1.38701 * 119.99863 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99978 * 180.02562 * 7 2 1
9 9 O 1.34808 * 120.00282 * 0.02562 * 7 2 1
10 10 C 1.35506 * 117.00188 * 185.05917 * 9 7 2
11 11 C 1.38837 * 120.16397 * 354.40150 * 10 9 7
12 12 C 1.38026 * 120.07032 * 180.27797 * 11 10 9
13 13 C 1.38580 * 120.41988 * 359.74334 * 12 11 10
14 14 C 1.37814 * 120.33229 * 359.97438 * 13 12 11
15 15 C 1.39730 * 119.91077 * 0.02562 * 14 13 12
16 16 C 1.47391 * 120.20096 * 179.97438 * 15 14 13
17 17 O 1.21515 * 119.99852 * 180.02562 * 16 15 14
18 18 O 1.34755 * 120.00169 * 0.02562 * 16 15 14
19 19 C 1.45200 * 117.00026 * 179.97438 * 18 16 15
20 20 C 1.53003 * 109.47009 * 179.97438 * 19 18 16
21 21 O 1.42889 * 109.47420 * 65.00174 * 20 19 18
22 22 C 1.42900 * 114.00551 * 180.02562 * 21 20 19
23 23 C 1.52994 * 109.47557 * 179.97438 * 22 21 20
24 24 C 1.53783 * 113.61568 * 274.13619 * 23 22 21
25 25 C 1.53952 * 87.01894 * 220.04818 * 24 23 22
26 26 C 1.53781 * 113.61460 * 176.52704 * 23 22 21
27 27 H 0.97005 * 119.99448 * 0.02562 * 1 2 3
28 28 H 1.07989 * 119.96100 * 359.97438 * 11 10 9
29 29 H 1.08006 * 119.78994 * 179.76522 * 12 11 10
30 30 H 1.08004 * 119.84070 * 180.02562 * 13 12 11
31 31 H 1.07992 * 120.04224 * 180.02562 * 14 13 12
32 32 H 1.09006 * 109.47453 * 59.99677 * 19 18 16
33 33 H 1.08999 * 109.47149 * 299.99604 * 19 18 16
34 34 H 1.09005 * 109.47098 * 304.99773 * 20 19 18
35 35 H 1.09008 * 109.46812 * 185.00286 * 20 19 18
36 36 H 1.09003 * 109.46618 * 300.00076 * 22 21 20
37 37 H 1.09004 * 109.47283 * 59.99225 * 22 21 20
38 38 H 1.08996 * 112.85125 * 45.33103 * 23 22 21
39 39 H 1.08998 * 113.61010 * 334.56580 * 24 23 22
40 40 H 1.08996 * 113.61324 * 105.46954 * 24 23 22
41 41 H 1.08999 * 113.53635 * 270.81111 * 25 24 23
42 42 H 1.09002 * 113.66852 * 139.93328 * 25 24 23
43 43 H 1.09000 * 113.61517 * 254.52558 * 26 23 22
44 44 H 1.09000 * 113.61683 * 25.34668 * 26 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4969 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4402 0.7002
7 6 2.0087 -1.2012 0.0005
8 1 3.0887 -1.2012 0.0010
9 8 1.3347 -2.3687 0.0005
10 6 2.0686 -3.5028 0.1075
11 6 3.4554 -3.4401 0.0941
12 6 4.2011 -4.5970 0.1974
13 6 3.5745 -5.8270 0.3205
14 6 2.1989 -5.9083 0.3416
15 6 1.4306 -4.7458 0.2379
16 6 -0.0411 -4.8254 0.2592
17 8 -0.7057 -3.8122 0.1683
18 8 -0.6495 -6.0218 0.3795
19 6 -2.1014 -6.0245 0.3938
20 6 -2.6073 -7.4615 0.5354
21 8 -2.2159 -7.9812 1.8076
22 6 -2.6404 -9.3253 2.0421
23 6 -2.1680 -9.7754 3.4259
24 6 -0.7383 -10.3419 3.4346
25 6 -1.2524 -11.4067 4.4206
26 6 -2.6472 -11.1846 3.8123
27 1 -0.4849 0.8401 -0.0004
28 1 3.9513 -2.4856 -0.0023
29 1 5.2797 -4.5434 0.1826
30 1 4.1671 -6.7263 0.4012
31 1 1.7156 -6.8691 0.4381
32 1 -2.4748 -5.5983 -0.5374
33 1 -2.4576 -5.4291 1.2344
34 1 -2.1794 -8.0770 -0.2559
35 1 -3.6945 -7.4733 0.4570
36 1 -3.7282 -9.3762 1.9948
37 1 -2.2128 -9.9793 1.2820
38 1 -2.3457 -9.0269 4.1980
39 1 -0.4251 -10.7513 2.4742
40 1 -0.0026 -9.6639 3.8672
41 1 -1.1785 -11.1043 5.4652
42 1 -0.8498 -12.4030 4.2378
43 1 -3.4502 -11.1860 4.5493
44 1 -2.8582 -11.8243 2.9553
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000842070251.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:13
Heat of formation + Delta-G solvation = -114.018675 kcal
Electronic energy + Delta-G solvation = -26260.137104 eV
Core-core repulsion = 22337.409928 eV
Total energy + Delta-G solvation = -3922.727176 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-39.80437 -39.30392 -38.63277 -37.34144 -36.38891 -35.39234 -32.39310 -31.12146
-30.17804 -28.94523 -28.04952 -25.81219 -25.46868 -23.84509 -22.88241 -22.32182
-21.46881 -20.16912 -19.58791 -18.04959 -17.54329 -16.96813 -16.64547 -16.14050
-15.93860 -15.32732 -15.18357 -15.13783 -14.64474 -14.35812 -14.02142 -13.75281
-13.67509 -13.27563 -13.16541 -12.67890 -12.61941 -12.46748 -12.23806 -12.04365
-11.74475 -11.61198 -11.35300 -11.21696 -11.07786 -10.91670 -10.76297 -10.75022
-10.52931 -10.47629 -10.45979 -10.02466 -9.73776 -9.64061 -9.20716 -8.91722
-8.29717 -7.35784 -6.49482 -4.09300 1.63692 2.33180 3.09683 3.11160
3.15805 3.30978 3.48095 3.52984 3.90151 4.37675 4.44557 4.57518
4.58812 4.66156 4.98454 5.03325 5.11772 5.16154 5.17123 5.22782
5.30454 5.33995 5.46028 5.50866 5.55043 5.59417 5.63450 5.65338
5.68087 5.76898 5.88384 5.89295 6.02668 6.12498 6.16334 6.27127
6.60084 6.67660 6.91466 7.02898 7.12363 7.15891 7.25205 7.33251
7.68224 7.89134 8.77379 8.90842 9.60469 10.64387
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.017088 B = 0.002731 C = 0.002492
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1638.190089 B =10249.471568 C =11234.391999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.833 5.833
2 C 0.044 3.956
3 Si 0.943 3.057
4 H -0.271 1.271
5 H -0.276 1.276
6 H -0.265 1.265
7 C -0.403 4.403
8 H 0.096 0.904
9 O -0.126 6.126
10 C 0.191 3.809
11 C -0.240 4.240
12 C -0.044 4.044
13 C -0.235 4.235
14 C -0.014 4.014
15 C -0.214 4.214
16 C 0.497 3.503
17 O -0.479 6.479
18 O -0.359 6.359
19 C 0.071 3.929
20 C 0.067 3.933
21 O -0.376 6.376
22 C 0.071 3.929
23 C -0.110 4.110
24 C -0.133 4.133
25 C -0.144 4.144
26 C -0.134 4.134
27 H 0.272 0.728
28 H 0.134 0.866
29 H 0.112 0.888
30 H 0.112 0.888
31 H 0.125 0.875
32 H 0.082 0.918
33 H 0.075 0.925
34 H 0.059 0.941
35 H 0.067 0.933
36 H 0.046 0.954
37 H 0.049 0.951
38 H 0.098 0.902
39 H 0.081 0.919
40 H 0.071 0.929
41 H 0.080 0.920
42 H 0.067 0.933
43 H 0.068 0.932
44 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.484 -18.857 3.676 19.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.464 5.464
2 C -0.164 4.164
3 Si 0.767 3.233
4 H -0.197 1.197
5 H -0.201 1.201
6 H -0.190 1.190
7 C -0.478 4.478
8 H 0.113 0.887
9 O -0.024 6.024
10 C 0.132 3.868
11 C -0.259 4.259
12 C -0.062 4.062
13 C -0.254 4.254
14 C -0.033 4.033
15 C -0.217 4.217
16 C 0.343 3.657
17 O -0.366 6.366
18 O -0.277 6.277
19 C -0.004 4.004
20 C -0.010 4.010
21 O -0.296 6.296
22 C -0.006 4.006
23 C -0.128 4.128
24 C -0.171 4.171
25 C -0.181 4.181
26 C -0.171 4.171
27 H 0.082 0.918
28 H 0.151 0.849
29 H 0.130 0.870
30 H 0.130 0.870
31 H 0.143 0.857
32 H 0.100 0.900
33 H 0.093 0.907
34 H 0.077 0.923
35 H 0.085 0.915
36 H 0.064 0.936
37 H 0.067 0.933
38 H 0.116 0.884
39 H 0.099 0.901
40 H 0.090 0.910
41 H 0.098 0.902
42 H 0.085 0.915
43 H 0.087 0.913
44 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -3.106 -18.177 3.759 18.820
hybrid contribution 0.197 0.742 -0.247 0.807
sum -2.909 -17.435 3.512 18.021
Atomic orbital electron populations
1.70124 1.06038 1.27878 1.42371 1.25415 0.95837 0.99046 0.96058
0.85694 0.79009 0.79783 0.78839 1.19692 1.20088 1.18981 1.21528
0.91995 0.80945 1.53379 0.88664 1.84145 1.33796 1.11141 1.73307
1.19242 0.90026 0.87012 0.90551 1.21103 0.93011 0.99451 1.12312
1.20960 0.98748 0.92292 0.94249 1.20538 0.94114 0.97184 1.13543
1.20975 0.93515 0.96291 0.92473 1.18037 0.88442 0.92509 1.22731
1.21099 0.89194 0.80914 0.74508 1.90998 1.65874 1.35203 1.44502
1.86555 1.21337 1.34497 1.85350 1.22863 0.78946 0.95616 1.02929
1.22558 0.98148 0.93902 0.86389 1.88010 1.78456 1.28109 1.34991
1.22514 0.97843 0.83727 0.96511 1.22543 0.97161 0.96461 0.96638
1.22969 0.96506 0.97868 0.99720 1.22847 0.96485 0.99453 0.99316
1.22903 0.97431 0.96022 1.00752 0.91758 0.84855 0.86996 0.87022
0.85734 0.90012 0.90696 0.92301 0.91513 0.93572 0.93309 0.88386
0.90089 0.91013 0.90160 0.91460 0.91339 0.90106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -24.96 13.67 55.48 0.76 -24.20 16
2 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16
3 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16
4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16
5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16
6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16
7 C -0.40 -11.35 9.49 30.90 0.29 -11.05 16
8 H 0.10 2.42 5.21 -52.49 -0.27 2.15 16
9 O -0.13 -3.72 7.84 -21.00 -0.16 -3.88 16
10 C 0.19 4.81 6.66 -38.57 -0.26 4.56 16
11 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16
12 C -0.04 -0.78 10.03 -39.53 -0.40 -1.18 16
13 C -0.23 -4.02 10.02 -39.61 -0.40 -4.42 16
14 C -0.01 -0.27 9.61 -39.18 -0.38 -0.64 16
15 C -0.21 -4.92 5.89 -104.83 -0.62 -5.54 16
16 C 0.50 11.70 7.89 34.46 0.27 11.98 16
17 O -0.48 -13.22 14.96 -26.59 -0.40 -13.62 16
18 O -0.36 -6.98 9.44 -43.42 -0.41 -7.39 16
19 C 0.07 1.13 5.85 37.16 0.22 1.35 16
20 C 0.07 0.81 6.33 37.16 0.24 1.05 16
21 O -0.38 -5.15 10.31 -38.80 -0.40 -5.55 16
22 C 0.07 0.71 5.76 37.15 0.21 0.93 16
23 C -0.11 -1.04 4.00 -89.81 -0.36 -1.40 16
24 C -0.13 -1.24 7.65 -25.83 -0.20 -1.43 16
25 C -0.14 -1.08 8.09 -25.83 -0.21 -1.29 16
26 C -0.13 -0.97 7.65 -25.92 -0.20 -1.17 16
27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16
28 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16
29 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16
30 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16
31 H 0.12 2.06 7.61 -52.49 -0.40 1.66 16
32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16
33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16
36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16
38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16
39 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16
40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
44 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16
LS Contribution 374.84 15.07 5.65 5.65
Total: -1.00 -34.11 374.84 -8.64 -42.75
By element:
Atomic # 1 Polarization: 9.98 SS G_CDS: -6.42 Total: 3.56 kcal
Atomic # 6 Polarization: -10.43 SS G_CDS: -2.23 Total: -12.67 kcal
Atomic # 7 Polarization: -24.96 SS G_CDS: 0.76 Total: -24.20 kcal
Atomic # 8 Polarization: -29.07 SS G_CDS: -1.37 Total: -30.44 kcal
Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -34.11 -8.64 -42.75 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842070251.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.268 kcal
(2) G-P(sol) polarization free energy of solvation -34.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.380 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.019 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds