Wall clock time and date at job start Tue Mar 31 2020 12:06:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86799 * 120.00257 * 2 1
4 4 H 1.48500 * 109.47184 * 269.99706 * 3 2 1
5 5 H 1.48502 * 109.46925 * 29.99324 * 3 2 1
6 6 H 1.48497 * 109.47344 * 149.99319 * 3 2 1
7 7 C 1.38701 * 119.99863 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99978 * 180.02562 * 7 2 1
9 9 O 1.34808 * 120.00282 * 0.02562 * 7 2 1
10 10 C 1.35506 * 117.00188 * 185.05917 * 9 7 2
11 11 C 1.38837 * 120.16397 * 354.40150 * 10 9 7
12 12 C 1.38026 * 120.07032 * 180.27797 * 11 10 9
13 13 C 1.38580 * 120.41988 * 359.74334 * 12 11 10
14 14 C 1.37814 * 120.33229 * 359.97438 * 13 12 11
15 15 C 1.39730 * 119.91077 * 0.02562 * 14 13 12
16 16 C 1.47391 * 120.20096 * 179.97438 * 15 14 13
17 17 O 1.21515 * 119.99852 * 180.02562 * 16 15 14
18 18 O 1.34755 * 120.00169 * 0.02562 * 16 15 14
19 19 C 1.45200 * 117.00026 * 179.97438 * 18 16 15
20 20 C 1.53003 * 109.47009 * 179.97438 * 19 18 16
21 21 O 1.42889 * 109.47420 * 65.00174 * 20 19 18
22 22 C 1.42900 * 114.00551 * 180.02562 * 21 20 19
23 23 C 1.52994 * 109.47557 * 179.97438 * 22 21 20
24 24 C 1.53783 * 113.61568 * 274.13619 * 23 22 21
25 25 C 1.53952 * 87.01894 * 220.04818 * 24 23 22
26 26 C 1.53781 * 113.61460 * 176.52704 * 23 22 21
27 27 H 0.97005 * 119.99448 * 0.02562 * 1 2 3
28 28 H 1.07989 * 119.96100 * 359.97438 * 11 10 9
29 29 H 1.08006 * 119.78994 * 179.76522 * 12 11 10
30 30 H 1.08004 * 119.84070 * 180.02562 * 13 12 11
31 31 H 1.07992 * 120.04224 * 180.02562 * 14 13 12
32 32 H 1.09006 * 109.47453 * 59.99677 * 19 18 16
33 33 H 1.08999 * 109.47149 * 299.99604 * 19 18 16
34 34 H 1.09005 * 109.47098 * 304.99773 * 20 19 18
35 35 H 1.09008 * 109.46812 * 185.00286 * 20 19 18
36 36 H 1.09003 * 109.46618 * 300.00076 * 22 21 20
37 37 H 1.09004 * 109.47283 * 59.99225 * 22 21 20
38 38 H 1.08996 * 112.85125 * 45.33103 * 23 22 21
39 39 H 1.08998 * 113.61010 * 334.56580 * 24 23 22
40 40 H 1.08996 * 113.61324 * 105.46954 * 24 23 22
41 41 H 1.08999 * 113.53635 * 270.81111 * 25 24 23
42 42 H 1.09002 * 113.66852 * 139.93328 * 25 24 23
43 43 H 1.09000 * 113.61517 * 254.52558 * 26 23 22
44 44 H 1.09000 * 113.61683 * 25.34668 * 26 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4969 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4402 0.7002
7 6 2.0087 -1.2012 0.0005
8 1 3.0887 -1.2012 0.0010
9 8 1.3347 -2.3687 0.0005
10 6 2.0686 -3.5028 0.1075
11 6 3.4554 -3.4401 0.0941
12 6 4.2011 -4.5970 0.1974
13 6 3.5745 -5.8270 0.3205
14 6 2.1989 -5.9083 0.3416
15 6 1.4306 -4.7458 0.2379
16 6 -0.0411 -4.8254 0.2592
17 8 -0.7057 -3.8122 0.1683
18 8 -0.6495 -6.0218 0.3795
19 6 -2.1014 -6.0245 0.3938
20 6 -2.6073 -7.4615 0.5354
21 8 -2.2159 -7.9812 1.8076
22 6 -2.6404 -9.3253 2.0421
23 6 -2.1680 -9.7754 3.4259
24 6 -0.7383 -10.3419 3.4346
25 6 -1.2524 -11.4067 4.4206
26 6 -2.6472 -11.1846 3.8123
27 1 -0.4849 0.8401 -0.0004
28 1 3.9513 -2.4856 -0.0023
29 1 5.2797 -4.5434 0.1826
30 1 4.1671 -6.7263 0.4012
31 1 1.7156 -6.8691 0.4381
32 1 -2.4748 -5.5983 -0.5374
33 1 -2.4576 -5.4291 1.2344
34 1 -2.1794 -8.0770 -0.2559
35 1 -3.6945 -7.4733 0.4570
36 1 -3.7282 -9.3762 1.9948
37 1 -2.2128 -9.9793 1.2820
38 1 -2.3457 -9.0269 4.1980
39 1 -0.4251 -10.7513 2.4742
40 1 -0.0026 -9.6639 3.8672
41 1 -1.1785 -11.1043 5.4652
42 1 -0.8498 -12.4030 4.2378
43 1 -3.4502 -11.1860 4.5493
44 1 -2.8582 -11.8243 2.9553
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000842070251.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:13
Heat of formation + Delta-G solvation = -134.219416 kcal
Electronic energy + Delta-G solvation = -26261.013074 eV
Core-core repulsion = 22337.409928 eV
Total energy + Delta-G solvation = -3923.603146 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.150 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.55326 -40.43504 -39.99462 -38.37642 -38.11387 -37.09626 -34.37528 -32.60966
-31.45911 -30.63833 -28.93402 -27.45497 -26.45385 -25.41072 -23.71352 -23.58985
-23.09110 -21.84396 -20.26573 -19.91535 -19.28488 -18.40371 -18.01186 -17.49389
-17.10490 -16.74161 -16.43940 -16.22405 -16.10293 -15.86371 -15.57957 -15.44774
-15.21231 -14.50173 -14.44063 -14.29020 -13.72825 -13.60473 -13.56865 -13.29634
-13.04219 -12.96713 -12.71677 -12.55418 -12.43372 -12.39691 -12.20396 -12.12197
-11.69722 -11.59886 -11.40763 -11.18785 -11.14636 -11.04304 -10.86112 -10.52067
-9.92715 -9.12349 -8.48766 -6.20001 -0.04631 0.68497 1.33018 1.44535
1.52390 1.72252 1.75708 2.14166 2.60711 2.81855 3.14494 3.36982
3.70920 3.77021 3.78972 3.91619 3.95114 4.01117 4.08818 4.10440
4.24054 4.33510 4.42531 4.44567 4.50949 4.54745 4.59757 4.62976
4.71308 4.87289 4.89367 4.94454 4.97668 5.04847 5.10577 5.12388
5.16136 5.36536 5.38072 5.47302 5.60266 5.60865 5.65860 5.92998
6.12025 6.26406 6.89840 6.98999 7.71452 8.71643
Molecular weight = 320.15amu
Principal moments of inertia in cm(-1)
A = 0.017088 B = 0.002731 C = 0.002492
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1638.190089 B =10249.471568 C =11234.391999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C -0.021 4.021
3 Si 1.025 2.975
4 H -0.260 1.260
5 H -0.273 1.273
6 H -0.246 1.246
7 C -0.428 4.428
8 H 0.112 0.888
9 O -0.188 6.188
10 C 0.157 3.843
11 C -0.256 4.256
12 C -0.027 4.027
13 C -0.204 4.204
14 C -0.012 4.012
15 C -0.237 4.237
16 C 0.497 3.503
17 O -0.533 6.533
18 O -0.348 6.348
19 C 0.061 3.939
20 C 0.075 3.925
21 O -0.409 6.409
22 C 0.067 3.933
23 C -0.120 4.120
24 C -0.140 4.140
25 C -0.139 4.139
26 C -0.122 4.122
27 H 0.273 0.727
28 H 0.132 0.868
29 H 0.162 0.838
30 H 0.165 0.835
31 H 0.152 0.848
32 H 0.086 0.914
33 H 0.056 0.944
34 H 0.076 0.924
35 H 0.100 0.900
36 H 0.062 0.938
37 H 0.061 0.939
38 H 0.081 0.919
39 H 0.085 0.915
40 H 0.054 0.946
41 H 0.080 0.920
42 H 0.079 0.921
43 H 0.075 0.925
44 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.017 -22.282 3.762 22.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.221 4.221
3 Si 0.843 3.157
4 H -0.185 1.185
5 H -0.198 1.198
6 H -0.169 1.169
7 C -0.504 4.504
8 H 0.129 0.871
9 O -0.090 6.090
10 C 0.102 3.898
11 C -0.275 4.275
12 C -0.045 4.045
13 C -0.222 4.222
14 C -0.030 4.030
15 C -0.240 4.240
16 C 0.345 3.655
17 O -0.424 6.424
18 O -0.266 6.266
19 C -0.013 4.013
20 C -0.001 4.001
21 O -0.329 6.329
22 C -0.009 4.009
23 C -0.138 4.138
24 C -0.178 4.178
25 C -0.176 4.176
26 C -0.160 4.160
27 H 0.082 0.918
28 H 0.150 0.850
29 H 0.179 0.821
30 H 0.183 0.817
31 H 0.170 0.830
32 H 0.104 0.896
33 H 0.075 0.925
34 H 0.094 0.906
35 H 0.118 0.882
36 H 0.080 0.920
37 H 0.080 0.920
38 H 0.100 0.900
39 H 0.104 0.896
40 H 0.073 0.927
41 H 0.098 0.902
42 H 0.098 0.902
43 H 0.094 0.906
44 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -0.562 -21.700 3.852 22.047
hybrid contribution -0.463 1.332 -0.228 1.428
sum -1.025 -20.369 3.624 20.714
Atomic orbital electron populations
1.70311 1.08448 1.28828 1.46415 1.26815 0.96770 1.03218 0.95267
0.84525 0.77907 0.73891 0.79421 1.18519 1.19810 1.16942 1.22107
0.92939 0.81440 1.53869 0.87069 1.84147 1.35478 1.12333 1.77047
1.19981 0.91903 0.86907 0.91058 1.21297 0.91716 1.01287 1.13166
1.21532 1.01053 0.90929 0.90946 1.21213 0.93479 0.98834 1.08661
1.21361 0.94499 0.95730 0.91386 1.18494 0.88662 0.93478 1.23367
1.21442 0.89821 0.81142 0.73140 1.90979 1.67113 1.37221 1.47050
1.86533 1.23485 1.32146 1.84424 1.23241 0.76848 0.98726 1.02509
1.22573 0.99834 0.91085 0.86569 1.87968 1.79218 1.30155 1.35528
1.22716 0.98957 0.82142 0.97042 1.22608 0.97768 0.97369 0.96073
1.23022 0.96001 0.98327 1.00427 1.22839 0.96470 0.99434 0.98902
1.22880 0.97472 0.94314 1.01308 0.91841 0.85025 0.82063 0.81706
0.83015 0.89607 0.92538 0.90610 0.88228 0.91952 0.92036 0.90042
0.89643 0.92728 0.90155 0.90222 0.90578 0.88738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -58.52 13.67 21.62 0.30 -58.22 16
2 C -0.02 -1.24 5.49 84.85 0.47 -0.77 16
3 Si 1.02 43.49 29.55 68.60 2.03 45.52 16
4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16
5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16
7 C -0.43 -25.56 9.49 67.93 0.64 -24.92 16
8 H 0.11 5.88 5.21 -2.91 -0.02 5.87 16
9 O -0.19 -11.91 7.84 1.06 0.01 -11.90 16
10 C 0.16 8.18 6.66 22.92 0.15 8.34 16
11 C -0.26 -10.83 9.16 22.36 0.20 -10.63 16
12 C -0.03 -0.83 10.03 22.30 0.22 -0.61 16
13 C -0.20 -5.84 10.02 22.25 0.22 -5.62 16
14 C -0.01 -0.41 9.61 22.53 0.22 -0.19 16
15 C -0.24 -11.07 5.89 -20.00 -0.12 -11.19 16
16 C 0.50 24.55 7.89 70.23 0.55 25.10 16
17 O -0.53 -31.84 14.96 26.78 0.40 -31.43 16
18 O -0.35 -13.80 9.44 -54.00 -0.51 -14.31 16
19 C 0.06 1.99 5.85 71.98 0.42 2.42 16
20 C 0.08 1.73 6.33 71.98 0.46 2.19 16
21 O -0.41 -10.76 10.31 -145.57 -1.50 -12.26 16
22 C 0.07 1.23 5.76 71.98 0.41 1.64 16
23 C -0.12 -2.12 4.00 -10.27 -0.04 -2.16 16
24 C -0.14 -2.42 7.65 31.18 0.24 -2.18 16
25 C -0.14 -1.81 8.09 31.18 0.25 -1.56 16
26 C -0.12 -1.49 7.65 31.12 0.24 -1.26 16
27 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16
28 H 0.13 5.52 5.64 -2.92 -0.02 5.50 16
29 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16
30 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16
31 H 0.15 4.44 7.61 -2.91 -0.02 4.42 16
32 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16
33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
34 H 0.08 1.49 8.14 -2.38 -0.02 1.48 16
35 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16
36 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16
37 H 0.06 0.96 7.87 -2.38 -0.02 0.94 16
38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
39 H 0.09 1.37 7.92 -2.39 -0.02 1.35 16
40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16
41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
44 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16
Total: -1.00 -84.19 374.84 6.27 -77.93
By element:
Atomic # 1 Polarization: 25.07 SS G_CDS: 1.00 Total: 26.07 kcal
Atomic # 6 Polarization: -25.94 SS G_CDS: 4.55 Total: -21.39 kcal
Atomic # 7 Polarization: -58.52 SS G_CDS: 0.30 Total: -58.22 kcal
Atomic # 8 Polarization: -68.31 SS G_CDS: -1.60 Total: -69.91 kcal
Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal
Total: -84.19 6.27 -77.93 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842070251.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.291 kcal
(2) G-P(sol) polarization free energy of solvation -84.194 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.485 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.266 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds