Wall clock time and date at job start Tue Mar 31 2020 12:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.66815 * 2 1 4 4 C 1.54706 * 110.75924 * 123.23122 * 2 1 3 5 5 C 1.51674 * 101.90578 * 93.12996 * 4 2 1 6 6 C 1.37698 * 132.12785 * 195.60555 * 5 4 2 7 7 C 1.38618 * 120.33815 * 178.84680 * 6 5 4 8 8 C 1.37803 * 119.97889 * 0.51151 * 7 6 5 9 9 C 1.39559 * 120.18051 * 359.67186 * 8 7 6 10 10 C 1.47398 * 120.05547 * 180.27218 * 9 8 7 11 11 O 1.21516 * 119.99571 * 180.02562 * 10 9 8 12 12 O 1.34753 * 120.00530 * 0.02562 * 10 9 8 13 13 C 1.45203 * 117.00092 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.46914 * 179.97438 * 13 12 10 15 15 O 1.42900 * 109.47410 * 65.00301 * 14 13 12 16 16 C 1.42902 * 114.00531 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47263 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00256 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99939 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00208 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00007 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47406 * 59.99945 * 21 19 17 23 23 H 1.48503 * 109.47275 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47168 * 299.99851 * 21 19 17 25 25 C 1.38843 * 106.99828 * 15.13311 * 5 4 2 26 26 O 1.35839 * 111.30607 * 1.42939 * 25 5 4 27 27 H 1.09006 * 109.46951 * 296.76201 * 1 2 3 28 28 H 1.08991 * 109.47444 * 56.76678 * 1 2 3 29 29 H 1.08999 * 109.46768 * 176.76756 * 1 2 3 30 30 H 1.08999 * 109.47114 * 183.23155 * 3 2 1 31 31 H 1.08999 * 109.47630 * 303.23477 * 3 2 1 32 32 H 1.09002 * 109.47487 * 63.23628 * 3 2 1 33 33 H 1.09005 * 110.94455 * 334.97992 * 4 2 1 34 34 H 1.08996 * 110.94568 * 211.28467 * 4 2 1 35 35 H 1.08010 * 119.83121 * 359.09416 * 6 5 4 36 36 H 1.07994 * 120.01370 * 180.27792 * 7 6 5 37 37 H 1.08002 * 119.91123 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.46832 * 300.00139 * 13 12 10 39 39 H 1.09001 * 109.46483 * 60.00026 * 13 12 10 40 40 H 1.09001 * 109.46929 * 185.00324 * 14 13 12 41 41 H 1.09002 * 109.47433 * 305.00080 * 14 13 12 42 42 H 1.09003 * 109.46715 * 299.99999 * 16 15 14 43 43 H 1.08996 * 109.46805 * 59.99684 * 16 15 14 44 44 H 0.96995 * 120.00054 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4315 0.0000 4 6 2.0783 -0.7928 1.2101 5 6 2.2650 -2.1769 0.6187 6 6 2.4529 -3.4116 1.1987 7 6 2.5755 -4.5446 0.4096 8 6 2.5200 -4.4369 -0.9631 9 6 2.3336 -3.1903 -1.5621 10 6 2.2686 -3.0791 -3.0305 11 8 2.1068 -1.9930 -3.5509 12 8 2.3886 -4.1818 -3.7957 13 6 2.3143 -3.9973 -5.2341 14 6 2.4707 -5.3505 -5.9305 15 8 1.3612 -6.1878 -5.5991 16 6 1.4094 -7.4825 -6.2020 17 6 0.1978 -8.2760 -5.7858 18 1 -0.5356 -7.8358 -5.1263 19 6 0.0254 -9.5639 -6.2468 20 7 0.9187 -10.1001 -7.0494 21 14 -1.4769 -10.5472 -5.7314 22 1 -2.7063 -9.8408 -6.1726 23 1 -1.4267 -11.8927 -6.3579 24 1 -1.4917 -10.6903 -4.2533 25 6 2.2076 -2.0397 -0.7618 26 8 2.0396 -0.7407 -1.1220 27 1 -0.3633 0.4628 0.9176 28 1 -0.3634 0.5631 -0.8595 29 1 -0.3633 -1.0260 -0.0579 30 1 3.1582 1.4093 -0.0579 31 1 1.6713 1.9704 -0.8595 32 1 1.7653 1.9349 0.9176 33 1 1.3538 -0.8115 2.0243 34 1 3.0299 -0.3813 1.5466 35 1 2.5011 -3.4981 2.2743 36 1 2.7183 -5.5109 0.8702 37 1 2.6160 -5.3203 -1.5769 38 1 1.3493 -3.5631 -5.4953 39 1 3.1128 -3.3288 -5.5562 40 1 2.5041 -5.2019 -7.0098 41 1 3.3950 -5.8245 -5.6003 42 1 1.4205 -7.3778 -7.2870 43 1 2.3117 -8.0009 -5.8778 44 1 0.7972 -11.0060 -7.3740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848855428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:39 Heat of formation + Delta-G solvation = -164.610610 kcal Electronic energy + Delta-G solvation = -26410.879102 eV Core-core repulsion = 22485.958096 eV Total energy + Delta-G solvation = -3924.921007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58026 -41.30212 -38.86900 -38.54313 -37.39880 -34.95869 -34.89071 -32.96714 -31.82004 -31.20706 -29.04061 -28.43798 -27.57988 -25.63669 -24.54743 -23.45495 -23.12761 -21.80674 -21.66870 -18.86399 -18.74158 -18.37731 -17.95949 -17.79324 -17.17765 -16.89305 -16.69171 -16.36441 -16.22569 -16.01296 -15.31063 -15.02883 -14.76694 -14.50401 -14.44371 -14.09646 -13.80336 -13.71408 -13.60630 -13.27710 -13.21066 -12.95623 -12.94269 -12.86585 -12.70310 -12.69587 -12.46366 -12.45535 -12.02352 -11.89671 -11.78898 -11.73607 -11.48782 -11.30825 -10.90423 -10.29053 -10.07694 -9.27327 -8.32805 -6.45247 -0.39257 0.23174 1.39721 1.42737 1.44495 1.52965 1.56274 2.08820 2.33938 2.63646 3.00863 3.02856 3.33075 3.40382 3.58435 3.80149 3.85976 3.88877 3.98895 4.05710 4.11951 4.23941 4.29157 4.37591 4.48435 4.59510 4.61996 4.66848 4.68543 4.73220 4.82810 4.83786 4.89254 4.95479 5.10472 5.15505 5.16131 5.20698 5.23873 5.31321 5.37864 5.53135 5.62929 5.94000 6.08512 6.48035 6.63761 6.77958 7.26157 8.79210 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.002582 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.399757 B =10841.752245 C =11458.217343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 C -0.137 4.137 4 C -0.088 4.088 5 C -0.192 4.192 6 C -0.022 4.022 7 C -0.155 4.155 8 C -0.039 4.039 9 C -0.181 4.181 10 C 0.501 3.499 11 O -0.533 6.533 12 O -0.352 6.352 13 C 0.078 3.922 14 C 0.057 3.943 15 O -0.409 6.409 16 C 0.208 3.792 17 C -0.551 4.551 18 H 0.059 0.941 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.982 3.018 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.264 1.264 25 C 0.151 3.849 26 O -0.306 6.306 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.174 0.826 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.059 0.941 42 H -0.008 1.008 43 H -0.009 1.009 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.404 20.146 22.155 30.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 C -0.194 4.194 4 C -0.124 4.124 5 C -0.192 4.192 6 C -0.040 4.040 7 C -0.173 4.173 8 C -0.058 4.058 9 C -0.183 4.183 10 C 0.348 3.652 11 O -0.425 6.425 12 O -0.268 6.268 13 C 0.005 3.995 14 C -0.020 4.020 15 O -0.330 6.330 16 C 0.133 3.867 17 C -0.589 4.589 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.805 3.195 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.189 1.189 25 C 0.104 3.896 26 O -0.220 6.220 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.010 0.990 43 H 0.009 0.991 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.290 20.492 21.758 30.194 hybrid contribution -0.311 -0.681 -1.079 1.313 sum 3.979 19.810 20.679 28.912 Atomic orbital electron populations 1.22230 0.92831 1.02329 1.04449 1.23307 0.95138 0.94087 0.83203 1.21874 1.01765 0.91205 1.04537 1.21987 1.04360 0.88258 0.97843 1.21170 1.08394 0.97971 0.91700 1.21041 0.91646 0.89069 1.02257 1.21432 1.03166 1.00792 0.91870 1.21452 0.92689 0.94729 0.96896 1.18590 1.18222 0.93625 0.87850 1.21529 0.72641 0.81801 0.89196 1.90813 1.47048 1.29092 1.75564 1.86624 1.82910 1.36284 1.21024 1.23202 1.03483 0.97180 0.75625 1.22618 0.90764 0.89821 0.98790 1.87871 1.44742 1.27209 1.73135 1.19880 0.96355 0.78994 0.91447 1.21341 1.07689 0.99168 1.30708 0.92275 1.25943 1.00548 0.98092 0.94487 1.70051 1.36876 1.16170 1.33668 0.85249 0.78086 0.77180 0.78996 1.19203 1.19774 1.18901 1.19696 0.92153 0.84291 0.93450 1.87008 1.78732 1.16007 1.40259 0.87188 0.92299 0.93678 0.91642 0.92125 0.86914 0.85787 0.87085 0.80863 0.81516 0.84157 0.91331 0.87614 0.89806 0.92292 0.99033 0.99118 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.86 71.98 0.64 -1.90 16 2 C 0.08 1.37 1.26 -10.21 -0.01 1.36 16 3 C -0.14 -1.66 8.95 71.98 0.64 -1.01 16 4 C -0.09 -1.06 6.18 30.74 0.19 -0.87 16 5 C -0.19 -3.61 6.26 -19.54 -0.12 -3.73 16 6 C -0.02 -0.33 10.02 22.23 0.22 -0.11 16 7 C -0.15 -2.77 10.05 22.26 0.22 -2.54 16 8 C -0.04 -1.03 9.59 22.49 0.22 -0.81 16 9 C -0.18 -5.72 5.89 -19.94 -0.12 -5.83 16 10 C 0.50 18.86 7.89 70.23 0.55 19.42 16 11 O -0.53 -22.20 15.66 25.15 0.39 -21.80 16 12 O -0.35 -13.49 9.42 -53.98 -0.51 -14.00 16 13 C 0.08 2.77 5.85 71.98 0.42 3.19 16 14 C 0.06 2.20 6.33 71.98 0.46 2.65 16 15 O -0.41 -20.93 10.30 -145.57 -1.50 -22.42 16 16 C 0.21 11.90 5.69 71.23 0.41 12.30 16 17 C -0.55 -33.51 9.43 25.60 0.24 -33.27 16 18 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 19 C 0.01 0.47 5.46 84.65 0.46 0.93 16 20 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 21 Si 0.98 44.75 29.54 68.60 2.03 46.77 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 C 0.15 4.24 6.59 23.02 0.15 4.39 16 26 O -0.31 -8.85 9.56 -76.84 -0.73 -9.58 16 27 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.88 8.07 -2.39 -0.02 0.86 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 0.77 7.92 -2.38 -0.02 0.75 16 34 H 0.11 0.97 7.92 -2.39 -0.02 0.95 16 35 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.14 3.85 7.59 -2.91 -0.02 3.82 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -80.11 376.67 5.52 -74.59 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.99 Total: 8.02 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.57 Total: -5.84 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.28 Total: -55.74 kcal Atomic # 8 Polarization: -65.46 SS G_CDS: -2.35 Total: -67.81 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -80.11 5.52 -74.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848855428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.025 kcal (2) G-P(sol) polarization free energy of solvation -80.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds