Wall clock time and date at job start Tue Mar 31 2020 12:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86794 * 120.00066 * 2 1 4 4 H 1.48495 * 109.47467 * 269.65720 * 3 2 1 5 5 H 1.48505 * 109.47128 * 29.65680 * 3 2 1 6 6 H 1.48499 * 109.47270 * 149.65337 * 3 2 1 7 7 C 1.40307 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99890 * 343.74907 * 7 2 1 9 9 C 1.40539 * 119.99676 * 163.75807 * 7 2 1 10 10 C 1.44183 * 123.71600 * 333.17307 * 9 7 2 11 11 C 1.32765 * 114.43287 * 180.26931 * 10 9 7 12 12 S 1.75475 * 111.35998 * 359.75814 * 11 10 9 13 13 C 1.39546 * 123.71503 * 152.98292 * 9 7 2 14 14 C 1.46245 * 125.22662 * 0.02562 * 13 9 7 15 15 O 1.21758 * 119.99706 * 359.71592 * 14 13 9 16 16 N 1.34776 * 119.99980 * 179.71783 * 14 13 9 17 17 C 1.46493 * 120.00203 * 179.97438 * 16 14 13 18 18 H 1.09009 * 110.40119 * 17.21547 * 17 16 14 19 19 C 1.54750 * 110.35724 * 139.47050 * 17 16 14 20 20 C 1.54992 * 102.93268 * 140.77606 * 19 17 16 21 21 N 1.48671 * 103.32077 * 322.92622 * 20 19 17 22 22 C 1.47285 * 105.68198 * 38.62147 * 21 20 19 23 23 C 1.53706 * 110.43392 * 214.58543 * 22 21 20 24 24 C 1.55018 * 104.05985 * 216.17902 * 23 22 21 25 25 C 1.54939 * 102.82084 * 37.44534 * 24 23 22 26 26 C 1.53311 * 110.64359 * 96.07437 * 22 21 20 27 27 H 0.97003 * 120.00039 * 359.97438 * 1 2 3 28 28 H 1.08005 * 122.78770 * 0.02744 * 10 9 7 29 29 H 1.07997 * 124.32462 * 179.76213 * 11 10 9 30 30 H 0.96999 * 119.99618 * 359.97438 * 16 14 13 31 31 H 1.08999 * 110.71605 * 22.42114 * 19 17 16 32 32 H 1.09000 * 110.72417 * 259.13829 * 19 17 16 33 33 H 1.08998 * 110.64998 * 204.46679 * 20 19 17 34 34 H 1.08994 * 110.64446 * 81.38756 * 20 19 17 35 35 H 1.00896 * 111.00018 * 159.04994 * 21 20 19 36 36 H 1.08999 * 110.50786 * 334.82488 * 23 22 21 37 37 H 1.09001 * 110.50847 * 97.53472 * 23 22 21 38 38 H 1.08999 * 110.74352 * 279.10929 * 24 23 22 39 39 H 1.09002 * 110.89702 * 155.84945 * 24 23 22 40 40 H 1.09006 * 110.48239 * 203.68815 * 25 24 23 41 41 H 1.08997 * 110.59952 * 81.11091 * 25 24 23 42 42 H 1.08994 * 110.07995 * 239.51237 * 26 22 21 43 43 H 1.09005 * 110.07378 * 1.00171 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4952 2.0422 -1.4000 5 1 1.4342 2.6547 0.6928 6 1 3.5343 1.4423 0.7073 7 6 2.0079 -1.2151 -0.0005 8 1 1.5003 -2.1318 0.2608 9 6 3.3713 -1.2392 -0.3410 10 6 3.9980 -0.2688 -1.2037 11 6 5.2946 -0.4703 -1.4062 12 16 5.8650 -1.8841 -0.5374 13 6 4.2682 -2.2029 0.1218 14 6 3.9296 -3.3115 1.0134 15 8 2.7875 -3.4430 1.4145 16 7 4.8816 -4.1875 1.3911 17 6 4.5426 -5.2977 2.2846 18 1 3.4638 -5.4534 2.3049 19 6 5.2644 -6.5906 1.8348 20 6 5.6784 -7.2422 3.1788 21 7 6.0459 -6.0769 4.0257 22 6 5.0689 -5.0240 3.6996 23 6 5.7314 -3.6385 3.7646 24 6 4.6220 -2.7169 4.3329 25 6 3.9171 -3.6267 5.3702 26 6 3.9171 -5.0233 4.7115 27 1 -0.4850 0.8401 0.0004 28 1 3.4568 0.5517 -1.6515 29 1 5.9186 0.1561 -2.0264 30 1 5.7914 -4.0828 1.0712 31 1 6.1428 -6.3529 1.2347 32 1 4.5842 -7.2405 1.2844 33 1 6.5354 -7.9010 3.0386 34 1 4.8414 -7.7865 3.6159 35 1 6.0071 -6.3153 5.0053 36 1 6.5918 -3.6577 4.4334 37 1 6.0278 -3.3099 2.7685 38 1 3.9283 -2.4180 3.5470 39 1 5.0542 -1.8416 4.8177 40 1 2.8961 -3.2870 5.5441 41 1 4.4761 -3.6462 6.3058 42 1 2.9700 -5.1959 4.2004 43 1 4.0809 -5.7934 5.4653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867982133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:53 Heat of formation + Delta-G solvation = -27.480637 kcal Electronic energy + Delta-G solvation = -25812.000010 eV Core-core repulsion = 22368.071027 eV Total energy + Delta-G solvation = -3443.928983 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60004 -39.53457 -37.89399 -36.41853 -35.19619 -34.83062 -31.21143 -30.53279 -29.64856 -29.52246 -27.91599 -24.67257 -23.68702 -22.57082 -22.33647 -21.31793 -20.75980 -20.08292 -19.32599 -17.81091 -17.42907 -17.26624 -16.89319 -16.39352 -16.05086 -15.75592 -15.36932 -15.24411 -14.95577 -14.70149 -14.28024 -14.13914 -13.83652 -13.60435 -13.34304 -13.27701 -13.03995 -12.98974 -12.70275 -12.51856 -12.26973 -12.17623 -12.07654 -12.00615 -11.82404 -11.71471 -11.57979 -11.39616 -11.35919 -11.16700 -10.39914 -9.82808 -9.46612 -9.41773 -9.08928 -9.03168 -6.50212 0.11727 1.15704 1.18983 1.32917 1.41769 1.62622 1.71473 2.05297 2.50583 2.53587 3.17028 3.20141 3.57030 3.62765 3.74211 4.00006 4.12274 4.19982 4.23072 4.35692 4.44594 4.49342 4.54214 4.68556 4.69424 4.82440 4.82790 4.86066 4.92238 4.97027 4.98220 5.04300 5.09383 5.16442 5.19278 5.21226 5.34937 5.37952 5.47468 5.77551 5.83357 5.91564 6.23183 6.47907 6.50092 6.62336 6.94715 7.76654 8.02484 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.004851 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.606210 B = 5771.021675 C = 6459.770393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.041 3.959 3 Si 0.970 3.030 4 H -0.232 1.232 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.411 4.411 8 H 0.064 0.936 9 C 0.097 3.903 10 C -0.202 4.202 11 C -0.155 4.155 12 S 0.050 5.950 13 C -0.452 4.452 14 C 0.596 3.404 15 O -0.597 6.597 16 N -0.716 5.716 17 C 0.140 3.860 18 H 0.067 0.933 19 C -0.130 4.130 20 C 0.045 3.955 21 N -0.654 5.654 22 C 0.090 3.910 23 C -0.097 4.097 24 C -0.130 4.130 25 C -0.114 4.114 26 C -0.136 4.136 27 H 0.302 0.698 28 H 0.139 0.861 29 H 0.194 0.806 30 H 0.399 0.601 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.348 0.652 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.534 -6.099 5.460 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.178 4.178 3 Si 0.791 3.209 4 H -0.156 1.156 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.442 4.442 8 H 0.082 0.918 9 C 0.085 3.915 10 C -0.235 4.235 11 C -0.290 4.290 12 S 0.308 5.692 13 C -0.571 4.571 14 C 0.392 3.608 15 O -0.482 6.482 16 N -0.368 5.368 17 C 0.034 3.966 18 H 0.085 0.915 19 C -0.168 4.168 20 C -0.084 4.084 21 N -0.284 5.284 22 C -0.003 4.003 23 C -0.135 4.135 24 C -0.168 4.168 25 C -0.152 4.152 26 C -0.175 4.175 27 H 0.113 0.887 28 H 0.156 0.844 29 H 0.211 0.789 30 H 0.235 0.765 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.166 0.834 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.419 -6.626 5.474 16.786 hybrid contribution -2.638 0.988 0.013 2.817 sum 11.781 -5.639 5.487 14.167 Atomic orbital electron populations 1.69619 1.09755 1.32479 1.32498 1.27294 0.95545 1.04930 0.90042 0.85547 0.79293 0.75070 0.80989 1.15634 1.19660 1.17697 1.19503 0.93037 0.95868 1.35809 0.91805 1.18219 0.92519 0.90805 0.89908 1.21523 0.95955 1.02512 1.03527 1.25570 0.98150 1.01444 1.03821 1.82485 1.10315 1.26341 1.50029 1.23102 0.96942 1.13135 1.23941 1.16966 0.83970 0.80936 0.78955 1.90692 1.22258 1.75767 1.59450 1.45682 1.11623 1.28719 1.50770 1.21789 0.99186 0.86653 0.89001 0.91528 1.22902 1.00553 0.94731 0.98644 1.23043 1.00624 0.92924 0.91802 1.63073 1.47894 1.06771 1.10686 1.22075 0.90736 0.93700 0.93752 1.22239 0.97305 0.92410 1.01529 1.22478 0.97864 0.98460 0.97988 1.22286 0.99996 0.94431 0.98470 1.22793 0.98085 0.98347 0.98253 0.88673 0.84388 0.78909 0.76456 0.89882 0.90315 0.87734 0.93032 0.83369 0.89974 0.91835 0.95337 0.91188 0.93325 0.89272 0.93856 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.83 13.92 21.89 0.30 -44.52 16 2 C 0.04 2.20 5.49 85.37 0.47 2.67 16 3 Si 0.97 40.28 24.58 68.60 1.69 41.96 16 4 H -0.23 -8.37 6.43 99.48 0.64 -7.73 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.25 -10.83 6.93 99.48 0.69 -10.15 16 7 C -0.41 -24.28 8.95 23.33 0.21 -24.07 16 8 H 0.06 4.38 6.38 -2.91 -0.02 4.36 16 9 C 0.10 5.06 5.23 -20.89 -0.11 4.95 16 10 C -0.20 -8.72 7.64 22.60 0.17 -8.55 16 11 C -0.16 -5.52 11.07 66.64 0.74 -4.78 16 12 S 0.05 1.84 22.25 -56.49 -1.26 0.59 16 13 C -0.45 -22.02 6.51 24.67 0.16 -21.86 16 14 C 0.60 29.12 6.89 86.32 0.59 29.71 16 15 O -0.60 -34.60 13.69 -4.53 -0.06 -34.67 16 16 N -0.72 -26.95 2.95 -443.36 -1.31 -28.26 16 17 C 0.14 4.58 3.21 45.74 0.15 4.73 16 18 H 0.07 2.65 6.12 -2.38 -0.01 2.64 16 19 C -0.13 -3.14 6.79 31.87 0.22 -2.92 16 20 C 0.05 0.84 7.56 86.64 0.65 1.50 16 21 N -0.65 -13.76 7.01 -459.22 -3.22 -16.98 16 22 C 0.09 2.50 1.03 3.94 0.00 2.50 16 23 C -0.10 -2.92 5.79 31.52 0.18 -2.74 16 24 C -0.13 -4.43 6.91 31.95 0.22 -4.21 16 25 C -0.11 -3.28 6.84 31.74 0.22 -3.06 16 26 C -0.14 -3.75 6.19 31.18 0.19 -3.55 16 27 H 0.30 14.47 8.29 -92.71 -0.77 13.71 16 28 H 0.14 5.57 4.57 -2.91 -0.01 5.56 16 29 H 0.19 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.40 13.48 7.00 -92.71 -0.65 12.83 16 31 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.35 5.95 7.99 -89.70 -0.72 5.23 16 36 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 37 H 0.06 2.14 5.54 -2.39 -0.01 2.13 16 38 H 0.03 1.26 6.97 -2.39 -0.02 1.24 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.44 7.10 -2.39 -0.02 1.42 16 43 H 0.09 1.86 7.38 -2.38 -0.02 1.84 16 Total: -1.00 -69.32 341.18 -0.18 -69.49 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: -0.39 Total: 42.08 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.07 Total: -29.69 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -4.22 Total: -89.76 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.06 Total: -34.67 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.69 Total: 41.96 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.26 Total: 0.59 kcal Total: -69.32 -0.18 -69.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867982133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.010 kcal (2) G-P(sol) polarization free energy of solvation -69.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds