Wall clock time and date at job start Tue Mar 31 2020 12:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48504 * 109.47044 * 270.00089 * 3 2 1 5 5 H 1.48502 * 109.47041 * 30.00202 * 3 2 1 6 6 H 1.48497 * 109.47299 * 150.00501 * 3 2 1 7 7 C 1.37878 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00127 * 173.39617 * 7 2 1 9 9 C 1.50703 * 119.99755 * 353.39687 * 7 2 1 10 10 C 1.52996 * 115.55361 * 91.61282 * 9 7 2 11 11 O 1.45202 * 109.46764 * 40.48228 * 10 9 7 12 12 C 1.34233 * 116.99650 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00287 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99676 * 180.02562 * 12 11 10 15 15 H 1.09007 * 109.47601 * 2.02941 * 14 12 11 16 16 C 1.52996 * 109.47450 * 122.03389 * 14 12 11 17 17 C 1.52993 * 109.47160 * 59.99632 * 16 14 12 18 18 C 1.53005 * 109.47270 * 60.00186 * 17 16 14 19 19 C 1.52996 * 109.46877 * 299.99987 * 18 17 16 20 20 C 1.52997 * 109.46910 * 60.00193 * 19 18 17 21 21 H 1.08997 * 109.47938 * 59.99801 * 20 19 18 22 22 C 1.53005 * 109.46996 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.47201 * 173.92935 * 22 20 19 24 24 F 1.39903 * 109.47142 * 293.93134 * 22 20 19 25 25 F 1.39900 * 109.47288 * 53.93197 * 22 20 19 26 26 C 1.53001 * 117.51524 * 237.31558 * 9 7 2 27 27 C 1.52998 * 60.00056 * 107.48007 * 26 9 7 28 28 H 0.97000 * 120.00059 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46838 * 280.48917 * 10 9 7 30 30 H 1.08993 * 109.47298 * 160.48166 * 10 9 7 31 31 H 1.09003 * 109.47239 * 299.99587 * 16 14 12 32 32 H 1.08997 * 109.47535 * 179.97438 * 16 14 12 33 33 H 1.08997 * 109.47611 * 300.00152 * 17 16 14 34 34 H 1.09003 * 109.47439 * 180.02562 * 17 16 14 35 35 H 1.08997 * 109.46987 * 60.00260 * 18 17 16 36 36 H 1.09003 * 109.47091 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.46952 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47535 * 299.99937 * 19 18 17 39 39 H 1.09005 * 117.49839 * 214.97153 * 26 9 7 40 40 H 1.08996 * 117.50168 * 359.97438 * 26 9 7 41 41 H 1.09004 * 117.49724 * 252.50633 * 27 26 9 42 42 H 1.09005 * 117.51789 * 107.48014 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0791 -1.1970 -0.1081 9 6 1.2586 -2.4949 0.1490 10 6 0.8280 -3.1628 -1.1584 11 8 1.8924 -3.0393 -2.1383 12 6 1.6720 -3.5768 -3.3485 13 8 0.6242 -4.1316 -3.5813 14 6 2.7314 -3.4882 -4.4166 15 1 3.6126 -2.9886 -4.0138 16 6 3.1099 -4.8970 -4.8777 17 6 1.8731 -5.5981 -5.4429 18 6 1.3333 -4.8003 -6.6317 19 6 0.9547 -3.3914 -6.1706 20 6 2.1916 -2.6904 -5.6053 21 1 2.9579 -2.6262 -6.3778 22 6 1.8132 -1.2812 -5.1448 23 9 2.9073 -0.6908 -4.5031 24 9 1.4511 -0.5095 -6.2541 25 9 0.7354 -1.3547 -4.2560 26 6 1.6549 -3.4074 1.3113 27 6 0.3307 -2.6424 1.3565 28 1 -0.4850 0.8400 0.0004 29 1 -0.0714 -2.6763 -1.5358 30 1 0.6219 -4.2175 -0.9769 31 1 3.4945 -5.4654 -4.0308 32 1 3.8758 -4.8329 -5.6505 33 1 1.1069 -5.6623 -4.6704 34 1 2.1426 -6.6020 -5.7711 35 1 2.0994 -4.7362 -7.4043 36 1 0.4524 -5.3001 -7.0347 37 1 0.5705 -2.8229 -7.0175 38 1 0.1885 -3.4555 -5.3980 39 1 1.6090 -4.4837 1.1446 40 1 2.4557 -3.0672 1.9679 41 1 0.2601 -1.7987 2.0431 42 1 -0.5866 -3.2149 1.2194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869598759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:38 Heat of formation + Delta-G solvation = -228.647023 kcal Electronic energy + Delta-G solvation = -29865.384013 eV Core-core repulsion = 25395.829438 eV Total energy + Delta-G solvation = -4469.554574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.83407 -47.35818 -47.22626 -40.59619 -38.03301 -36.45023 -35.10933 -32.03545 -31.87197 -31.35248 -27.11949 -25.76438 -25.18611 -23.52892 -22.03385 -21.26831 -21.08586 -19.59717 -19.16063 -18.14681 -17.96405 -17.51325 -17.07962 -16.15741 -15.93185 -15.06657 -14.93174 -14.58809 -14.24956 -14.12854 -14.11449 -13.86654 -13.69276 -13.55528 -13.38740 -13.35504 -13.00202 -12.73308 -12.63213 -12.41909 -12.05309 -11.92421 -11.75730 -11.52109 -11.27153 -11.04782 -10.92435 -10.80835 -10.47187 -10.43506 -10.35364 -10.27230 -9.73660 -9.68295 -9.31774 -8.85046 -8.38796 -8.11643 -6.00161 -4.03993 2.64399 2.88313 3.27391 3.33777 3.40427 3.43341 3.94889 3.98469 4.15682 4.45345 4.67769 4.72607 4.79318 4.99048 5.06219 5.13931 5.20555 5.22711 5.31438 5.36686 5.40888 5.56897 5.69139 5.77468 5.95452 5.99107 6.01793 6.09912 6.22246 6.24318 6.31330 6.43229 6.50626 6.69075 6.78653 7.05043 7.21580 7.40541 7.53931 7.93072 8.34989 8.51033 8.96245 9.61084 11.09208 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.005930 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.687858 B = 4720.260719 C = 5935.042645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.071 3.929 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.118 3.882 11 O -0.319 6.319 12 C 0.454 3.546 13 O -0.509 6.509 14 C -0.084 4.084 15 H 0.113 0.887 16 C -0.101 4.101 17 C -0.141 4.141 18 C -0.103 4.103 19 C -0.135 4.135 20 C -0.117 4.117 21 H 0.124 0.876 22 C 0.446 3.554 23 F -0.176 7.176 24 F -0.188 7.188 25 F -0.166 7.166 26 C -0.211 4.211 27 C -0.140 4.140 28 H 0.260 0.740 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -8.608 -13.063 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.034 3.966 10 C 0.045 3.955 11 O -0.233 6.233 12 C 0.297 3.703 13 O -0.400 6.400 14 C -0.104 4.104 15 H 0.131 0.869 16 C -0.138 4.138 17 C -0.178 4.178 18 C -0.140 4.140 19 C -0.172 4.172 20 C -0.137 4.137 21 H 0.142 0.858 22 C 0.391 3.609 23 F -0.157 7.157 24 F -0.169 7.169 25 F -0.147 7.147 26 C -0.248 4.248 27 C -0.178 4.178 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.174 -8.582 -13.050 16.167 hybrid contribution 0.220 1.321 0.079 1.341 sum 4.393 -7.261 -12.971 15.501 Atomic orbital electron populations 1.70006 1.05849 1.26476 1.49405 1.24950 0.94784 0.98892 0.94536 0.86680 0.80045 0.83604 0.78294 1.20534 1.21221 1.19716 1.20252 0.93026 0.88106 1.50504 0.91974 1.18789 0.99214 0.94652 0.83985 1.22760 0.87764 0.97257 0.87720 1.86600 1.46318 1.69488 1.20846 1.23166 0.87367 0.75772 0.83992 1.90455 1.27324 1.41326 1.80902 1.20985 0.98300 0.99528 0.91547 0.86858 1.21416 0.98716 0.92181 1.01479 1.21891 0.98488 0.97968 0.99455 1.21337 1.00828 0.94424 0.97434 1.21904 0.96438 0.96347 1.02478 1.22424 1.02661 0.89272 0.99342 0.85813 1.20605 0.75613 0.89145 0.75506 1.93221 1.53976 1.86073 1.82435 1.93148 1.92116 1.78253 1.53384 1.93284 1.56121 1.96265 1.69045 1.23157 0.99608 0.95646 1.06438 1.22471 0.91308 1.00836 1.03158 0.93074 0.91316 0.94290 0.90570 0.90229 0.88515 0.91939 0.92308 0.91335 0.91013 0.87680 0.91730 0.90078 0.89246 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 12.62 55.43 0.70 -24.61 16 2 C 0.07 1.99 5.36 -17.82 -0.10 1.89 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.48 -13.26 8.28 -34.44 -0.29 -13.55 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.03 0.85 1.89 -155.66 -0.29 0.56 16 10 C 0.12 2.78 5.52 37.16 0.21 2.99 16 11 O -0.32 -7.08 9.62 -39.26 -0.38 -7.46 16 12 C 0.45 8.38 4.34 36.01 0.16 8.54 16 13 O -0.51 -9.78 11.05 -18.75 -0.21 -9.99 16 14 C -0.08 -1.16 2.47 -91.77 -0.23 -1.39 16 15 H 0.11 1.52 7.66 -51.93 -0.40 1.12 16 16 C -0.10 -1.06 5.44 -26.74 -0.15 -1.21 16 17 C -0.14 -1.53 5.63 -26.73 -0.15 -1.68 16 18 C -0.10 -1.02 5.92 -26.73 -0.16 -1.18 16 19 C -0.13 -1.66 4.65 -26.73 -0.12 -1.79 16 20 C -0.12 -1.50 2.06 -90.62 -0.19 -1.69 16 21 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 22 C 0.45 7.36 2.63 37.16 0.10 7.46 16 23 F -0.18 -3.16 16.56 2.25 0.04 -3.13 16 24 F -0.19 -2.90 17.04 2.25 0.04 -2.87 16 25 F -0.17 -3.41 14.36 2.25 0.03 -3.38 16 26 C -0.21 -4.61 9.88 -26.73 -0.26 -4.87 16 27 C -0.14 -3.29 9.08 -26.73 -0.24 -3.54 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.07 1.77 8.13 -51.93 -0.42 1.35 16 30 H 0.04 0.84 7.95 -51.93 -0.41 0.43 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.34 5.45 -51.93 -0.28 1.05 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 38 H 0.10 1.63 5.11 -51.93 -0.27 1.37 16 39 H 0.06 1.26 8.09 -51.93 -0.42 0.84 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.09 2.23 8.13 -51.93 -0.42 1.81 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -30.33 345.01 -7.28 -37.61 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.96 Total: 1.37 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.71 Total: -9.44 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.70 Total: -24.61 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.58 Total: -17.44 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 0.11 Total: -9.37 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.33 -7.28 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869598759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.039 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds