Wall clock time and date at job start Tue Mar 31 2020 12:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48504 * 109.47044 * 270.00089 * 3 2 1 5 5 H 1.48502 * 109.47041 * 30.00202 * 3 2 1 6 6 H 1.48497 * 109.47299 * 150.00501 * 3 2 1 7 7 C 1.37878 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00127 * 173.39617 * 7 2 1 9 9 C 1.50703 * 119.99755 * 353.39687 * 7 2 1 10 10 C 1.52996 * 115.55361 * 91.61282 * 9 7 2 11 11 O 1.45202 * 109.46764 * 40.48228 * 10 9 7 12 12 C 1.34233 * 116.99650 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00287 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99676 * 180.02562 * 12 11 10 15 15 H 1.09007 * 109.47601 * 2.02941 * 14 12 11 16 16 C 1.52996 * 109.47450 * 122.03389 * 14 12 11 17 17 C 1.52993 * 109.47160 * 59.99632 * 16 14 12 18 18 C 1.53005 * 109.47270 * 60.00186 * 17 16 14 19 19 C 1.52996 * 109.46877 * 299.99987 * 18 17 16 20 20 C 1.52997 * 109.46910 * 60.00193 * 19 18 17 21 21 H 1.08997 * 109.47938 * 59.99801 * 20 19 18 22 22 C 1.53005 * 109.46996 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.47201 * 173.92935 * 22 20 19 24 24 F 1.39903 * 109.47142 * 293.93134 * 22 20 19 25 25 F 1.39900 * 109.47288 * 53.93197 * 22 20 19 26 26 C 1.53001 * 117.51524 * 237.31558 * 9 7 2 27 27 C 1.52998 * 60.00056 * 107.48007 * 26 9 7 28 28 H 0.97000 * 120.00059 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46838 * 280.48917 * 10 9 7 30 30 H 1.08993 * 109.47298 * 160.48166 * 10 9 7 31 31 H 1.09003 * 109.47239 * 299.99587 * 16 14 12 32 32 H 1.08997 * 109.47535 * 179.97438 * 16 14 12 33 33 H 1.08997 * 109.47611 * 300.00152 * 17 16 14 34 34 H 1.09003 * 109.47439 * 180.02562 * 17 16 14 35 35 H 1.08997 * 109.46987 * 60.00260 * 18 17 16 36 36 H 1.09003 * 109.47091 * 179.97438 * 18 17 16 37 37 H 1.09003 * 109.46952 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47535 * 299.99937 * 19 18 17 39 39 H 1.09005 * 117.49839 * 214.97153 * 26 9 7 40 40 H 1.08996 * 117.50168 * 359.97438 * 26 9 7 41 41 H 1.09004 * 117.49724 * 252.50633 * 27 26 9 42 42 H 1.09005 * 117.51789 * 107.48014 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0791 -1.1970 -0.1081 9 6 1.2586 -2.4949 0.1490 10 6 0.8280 -3.1628 -1.1584 11 8 1.8924 -3.0393 -2.1383 12 6 1.6720 -3.5768 -3.3485 13 8 0.6242 -4.1316 -3.5813 14 6 2.7314 -3.4882 -4.4166 15 1 3.6126 -2.9886 -4.0138 16 6 3.1099 -4.8970 -4.8777 17 6 1.8731 -5.5981 -5.4429 18 6 1.3333 -4.8003 -6.6317 19 6 0.9547 -3.3914 -6.1706 20 6 2.1916 -2.6904 -5.6053 21 1 2.9579 -2.6262 -6.3778 22 6 1.8132 -1.2812 -5.1448 23 9 2.9073 -0.6908 -4.5031 24 9 1.4511 -0.5095 -6.2541 25 9 0.7354 -1.3547 -4.2560 26 6 1.6549 -3.4074 1.3113 27 6 0.3307 -2.6424 1.3565 28 1 -0.4850 0.8400 0.0004 29 1 -0.0714 -2.6763 -1.5358 30 1 0.6219 -4.2175 -0.9769 31 1 3.4945 -5.4654 -4.0308 32 1 3.8758 -4.8329 -5.6505 33 1 1.1069 -5.6623 -4.6704 34 1 2.1426 -6.6020 -5.7711 35 1 2.0994 -4.7362 -7.4043 36 1 0.4524 -5.3001 -7.0347 37 1 0.5705 -2.8229 -7.0175 38 1 0.1885 -3.4555 -5.3980 39 1 1.6090 -4.4837 1.1446 40 1 2.4557 -3.0672 1.9679 41 1 0.2601 -1.7987 2.0431 42 1 -0.5866 -3.2149 1.2194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869598759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:38 Heat of formation + Delta-G solvation = -243.688778 kcal Electronic energy + Delta-G solvation = -29866.036272 eV Core-core repulsion = 25395.829438 eV Total energy + Delta-G solvation = -4470.206834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.18851 -48.68841 -48.65712 -41.91949 -39.41598 -38.11980 -36.70265 -33.99042 -32.98645 -32.31767 -28.83367 -27.42098 -26.83678 -24.64803 -23.12923 -22.96365 -22.27287 -21.25614 -20.73789 -19.46964 -19.29776 -18.79683 -18.58736 -17.94872 -17.42191 -16.75475 -16.42987 -16.06272 -15.69784 -15.47240 -15.42114 -15.11219 -15.07176 -14.85424 -14.82297 -14.75319 -14.62309 -14.01425 -13.83784 -13.59326 -13.49823 -13.25369 -13.18123 -12.92698 -12.89026 -12.83994 -12.40905 -12.29537 -12.07102 -12.03085 -11.53609 -11.45946 -11.33078 -11.21063 -10.85485 -10.63385 -10.44702 -10.01188 -8.13055 -6.21528 1.24560 1.36515 1.38496 1.47498 1.66589 1.88721 2.40960 2.73353 2.83236 2.95502 3.15458 3.38954 3.55421 3.63830 3.77183 4.00928 4.09515 4.16029 4.17191 4.29352 4.34504 4.39147 4.46330 4.47567 4.63907 4.68162 4.84765 4.92685 4.96065 4.97532 5.14311 5.17336 5.18994 5.31300 5.33646 5.39095 5.54112 5.61120 5.75229 5.92691 6.36381 6.81110 6.93034 7.45663 8.95743 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.005930 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.687858 B = 4720.260719 C = 5935.042645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.053 0.947 9 C -0.002 4.002 10 C 0.133 3.867 11 O -0.342 6.342 12 C 0.443 3.557 13 O -0.520 6.520 14 C -0.081 4.081 15 H 0.117 0.883 16 C -0.095 4.095 17 C -0.142 4.142 18 C -0.097 4.097 19 C -0.135 4.135 20 C -0.106 4.106 21 H 0.173 0.827 22 C 0.433 3.567 23 F -0.188 7.188 24 F -0.183 7.183 25 F -0.198 7.198 26 C -0.180 4.180 27 C -0.144 4.144 28 H 0.258 0.742 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 -9.989 -14.949 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.071 0.929 9 C -0.002 4.002 10 C 0.059 3.941 11 O -0.257 6.257 12 C 0.287 3.713 13 O -0.411 6.411 14 C -0.101 4.101 15 H 0.135 0.865 16 C -0.132 4.132 17 C -0.179 4.179 18 C -0.134 4.134 19 C -0.172 4.172 20 C -0.125 4.125 21 H 0.191 0.809 22 C 0.379 3.621 23 F -0.169 7.169 24 F -0.164 7.164 25 F -0.180 7.180 26 C -0.217 4.217 27 C -0.181 4.181 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.352 -9.976 -14.938 19.053 hybrid contribution -0.494 1.731 0.615 1.902 sum 5.859 -8.244 -14.324 17.535 Atomic orbital electron populations 1.70116 1.07005 1.26875 1.50715 1.25616 0.95495 1.01787 0.94585 0.85842 0.79451 0.80255 0.77948 1.21047 1.20663 1.18507 1.20479 0.92778 0.89597 1.49826 0.92878 1.18936 1.00751 0.95166 0.85370 1.22353 0.86866 0.97314 0.87582 1.86592 1.45886 1.70847 1.22377 1.24240 0.88577 0.74862 0.83577 1.90470 1.28246 1.41559 1.80789 1.21241 0.96482 1.02201 0.90141 0.86469 1.21538 0.99495 0.89462 1.02714 1.21868 0.97598 0.99646 0.98801 1.21355 1.02108 0.92195 0.97740 1.21899 0.95275 0.98429 1.01628 1.22627 1.04101 0.86022 0.99776 0.80932 1.21377 0.74468 0.91268 0.75014 1.93188 1.54315 1.86574 1.82855 1.93148 1.92057 1.78482 1.52707 1.93223 1.57864 1.96489 1.70425 1.23152 0.98214 0.96718 1.03627 1.22379 0.92703 1.00845 1.02190 0.93338 0.95124 0.92752 0.90530 0.85943 0.92300 0.89454 0.88804 0.90932 0.89750 0.91716 0.88804 0.89683 0.91381 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.02 12.62 21.45 0.27 -53.75 16 2 C 0.03 1.43 5.36 84.65 0.45 1.88 16 3 Si 0.94 45.28 29.54 68.60 2.03 47.31 16 4 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.49 -27.50 8.28 25.60 0.21 -27.29 16 8 H 0.05 3.00 7.82 -2.91 -0.02 2.98 16 9 C 0.00 -0.09 1.89 -52.93 -0.10 -0.19 16 10 C 0.13 6.44 5.52 71.98 0.40 6.84 16 11 O -0.34 -15.59 9.62 -51.44 -0.49 -16.09 16 12 C 0.44 16.55 4.34 71.24 0.31 16.86 16 13 O -0.52 -20.62 11.05 21.97 0.24 -20.37 16 14 C -0.08 -2.09 2.47 -11.54 -0.03 -2.12 16 15 H 0.12 2.93 7.66 -2.38 -0.02 2.91 16 16 C -0.10 -1.65 5.44 30.59 0.17 -1.49 16 17 C -0.14 -2.66 5.63 30.59 0.17 -2.48 16 18 C -0.10 -1.58 5.92 30.59 0.18 -1.40 16 19 C -0.13 -3.09 4.65 30.59 0.14 -2.95 16 20 C -0.11 -2.46 2.06 -10.79 -0.02 -2.49 16 21 H 0.17 2.35 8.14 -2.39 -0.02 2.33 16 22 C 0.43 14.14 2.63 71.98 0.19 14.33 16 23 F -0.19 -6.72 16.56 44.97 0.74 -5.98 16 24 F -0.18 -5.49 17.04 44.97 0.77 -4.73 16 25 F -0.20 -8.54 14.36 44.97 0.65 -7.89 16 26 C -0.18 -7.67 9.88 30.59 0.30 -7.37 16 27 C -0.14 -6.82 9.08 30.59 0.28 -6.55 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.97 16 29 H 0.03 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.05 2.39 7.95 -2.39 -0.02 2.37 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.58 5.45 -2.39 -0.01 1.57 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.69 7.96 -2.39 -0.02 1.67 16 38 H 0.06 2.05 5.11 -2.39 -0.01 2.03 16 39 H 0.09 3.44 8.09 -2.38 -0.02 3.42 16 40 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.07 3.49 8.13 -2.38 -0.02 3.47 16 42 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -69.72 345.01 7.89 -61.83 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.03 Total: 14.07 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 2.65 Total: -14.41 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.27 Total: -53.75 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.25 Total: -36.46 kcal Atomic # 9 Polarization: -20.75 SS G_CDS: 2.16 Total: -18.60 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.72 7.89 -61.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869598759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.856 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds