Wall clock time and date at job start Tue Mar 31 2020 12:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48501 * 109.47043 * 274.97189 * 3 2 1 5 5 H 1.48507 * 109.46756 * 34.96794 * 3 2 1 6 6 H 1.48494 * 109.47414 * 154.96846 * 3 2 1 7 7 C 1.38814 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00350 * 171.17760 * 7 2 1 9 9 N 1.36940 * 120.00038 * 351.18645 * 7 2 1 10 10 C 1.46593 * 125.31932 * 169.82300 * 9 7 2 11 11 C 1.53400 * 108.10861 * 178.64782 * 10 9 7 12 12 H 1.09002 * 110.26766 * 225.14984 * 11 10 9 13 13 C 1.51155 * 110.93197 * 102.74349 * 11 10 9 14 14 C 1.51726 * 111.88600 * 156.74763 * 13 11 10 15 15 N 1.43503 * 114.25616 * 82.64727 * 14 13 11 16 16 C 1.34780 * 122.55473 * 122.92283 * 15 14 13 17 17 O 1.21701 * 119.99410 * 356.61661 * 16 15 14 18 18 C 1.46579 * 119.99935 * 176.61387 * 16 15 14 19 19 C 1.36648 * 125.45499 * 220.90616 * 18 16 15 20 20 C 1.37474 * 113.29403 * 179.80439 * 19 18 16 21 21 C 1.33816 * 115.09996 * 0.49687 * 20 19 18 22 22 S 1.70612 * 110.95644 * 359.72803 * 21 20 19 23 23 C 1.49550 * 114.89852 * 302.93817 * 15 14 13 24 24 C 1.52921 * 105.32564 * 70.19387 * 23 15 14 25 25 C 1.51846 * 111.77238 * 258.92335 * 24 23 15 26 26 H 1.08996 * 110.53619 * 298.02106 * 25 24 23 27 27 C 1.46665 * 125.31582 * 349.81909 * 9 7 2 28 28 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.74794 * 58.98074 * 10 9 7 30 30 H 1.08997 * 109.74607 * 298.31607 * 10 9 7 31 31 H 1.08999 * 108.99658 * 36.12833 * 13 11 10 32 32 H 1.08998 * 108.93302 * 277.32733 * 13 11 10 33 33 H 1.08995 * 108.52765 * 321.40624 * 14 13 11 34 34 H 1.09001 * 108.52283 * 203.87880 * 14 13 11 35 35 H 1.07997 * 123.35682 * 0.02562 * 19 18 16 36 36 H 1.08001 * 122.44996 * 180.20923 * 20 19 18 37 37 H 1.08003 * 124.52070 * 179.70680 * 21 20 19 38 38 H 1.08998 * 110.26715 * 311.24707 * 23 15 14 39 39 H 1.08992 * 110.38921 * 189.20782 * 23 15 14 40 40 H 1.09001 * 109.00872 * 19.49231 * 24 23 15 41 41 H 1.08995 * 109.00498 * 138.35793 * 24 23 15 42 42 H 1.09007 * 109.96685 * 317.65061 * 27 9 7 43 43 H 1.08999 * 109.96808 * 78.86821 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3927 2.1070 -1.3948 5 1 1.5041 2.6201 0.8025 6 1 3.5963 1.4121 0.5924 7 6 2.0103 -1.2022 0.0005 8 1 3.0807 -1.2078 -0.1429 9 7 1.3377 -2.3810 0.1828 10 6 1.9070 -3.7191 -0.0032 11 6 0.8234 -4.7499 0.3381 12 1 1.2378 -5.5401 0.9641 13 6 0.2234 -5.3387 -0.9182 14 6 -0.3990 -6.6988 -0.6639 15 7 -1.7300 -6.6475 -0.1297 16 6 -2.7777 -7.2415 -0.7348 17 8 -2.6259 -7.7982 -1.8063 18 6 -4.0997 -7.2169 -0.1022 19 6 -4.9779 -8.2630 -0.0603 20 6 -6.1458 -7.9662 0.6015 21 6 -6.2276 -6.7178 1.0764 22 16 -4.8128 -5.8344 0.7174 23 6 -1.8662 -5.8845 1.1492 24 6 -1.6568 -4.4181 0.7692 25 6 -0.2568 -3.9414 1.1135 26 1 -0.0850 -4.0039 2.1880 27 6 -0.0647 -2.5021 0.5946 28 1 -0.4850 0.8401 -0.0004 29 1 2.7623 -3.8508 0.6596 30 1 2.2214 -3.8447 -1.0392 31 1 1.0055 -5.4414 -1.6704 32 1 -0.5438 -4.6621 -1.2944 33 1 0.2342 -7.2442 0.0358 34 1 -0.4243 -7.2494 -1.6043 35 1 -4.7735 -9.2280 -0.5000 36 1 -6.9411 -8.6864 0.7249 37 1 -7.0762 -6.3222 1.6148 38 1 -1.1047 -6.2023 1.8614 39 1 -2.8606 -6.0266 1.5722 40 1 -1.8177 -4.3026 -0.3026 41 1 -2.3821 -3.8056 1.3048 42 1 -0.2827 -1.7873 1.3882 43 1 -0.7198 -2.3226 -0.2579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946460444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:00 Heat of formation + Delta-G solvation = 34.702253 kcal Electronic energy + Delta-G solvation = -25277.834940 eV Core-core repulsion = 21836.602409 eV Total energy + Delta-G solvation = -3441.232530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44353 -38.75230 -37.53712 -35.84768 -33.13678 -32.41276 -30.92526 -29.86992 -27.60467 -27.41634 -25.27031 -24.13039 -22.99197 -22.72230 -20.57064 -20.15726 -19.28624 -18.33300 -18.26777 -16.93092 -16.41232 -16.11488 -15.42081 -15.21847 -14.96550 -14.30579 -14.15572 -13.69803 -13.61838 -13.41015 -13.02445 -12.98195 -12.94028 -12.48081 -12.41261 -12.10709 -11.75308 -11.41926 -11.31625 -11.25337 -10.99252 -10.82317 -10.74768 -10.68123 -10.14949 -10.04413 -9.98414 -9.75750 -9.66742 -9.54620 -9.08805 -8.66687 -8.63218 -8.51076 -6.75967 -5.73747 -3.06021 0.41603 1.23929 1.72930 2.27552 2.86085 3.04280 3.39565 3.45486 3.47351 4.35124 4.50755 4.78519 4.84904 5.02190 5.11253 5.13321 5.17346 5.25415 5.31981 5.38408 5.48862 5.57489 5.68152 5.72011 5.76083 5.90130 5.92636 6.01143 6.10572 6.11767 6.16054 6.28598 6.40623 6.50226 6.56250 6.60454 6.66721 6.79717 7.04383 7.32536 7.52053 7.64026 7.80410 8.05877 8.29472 9.23114 9.84789 10.51031 11.38967 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.003408 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.094144 B = 8215.131193 C = 9079.999317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.601 5.601 10 C 0.141 3.859 11 C -0.091 4.091 12 H 0.067 0.933 13 C -0.126 4.126 14 C 0.112 3.888 15 N -0.599 5.599 16 C 0.595 3.405 17 O -0.533 6.533 18 C -0.261 4.261 19 C -0.070 4.070 20 C -0.148 4.148 21 C -0.252 4.252 22 S 0.237 5.763 23 C 0.096 3.904 24 C -0.130 4.130 25 C -0.108 4.108 26 H 0.068 0.932 27 C 0.184 3.816 28 H 0.252 0.748 29 H 0.020 0.980 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.167 0.833 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 -15.812 4.974 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.327 5.327 10 C 0.015 3.985 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.165 4.165 14 C -0.012 4.012 15 N -0.332 5.332 16 C 0.383 3.617 17 O -0.412 6.412 18 C -0.381 4.381 19 C -0.103 4.103 20 C -0.180 4.180 21 C -0.390 4.390 22 S 0.504 5.496 23 C -0.027 4.027 24 C -0.168 4.168 25 C -0.128 4.128 26 H 0.087 0.913 27 C 0.059 3.941 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.129 -14.406 4.670 18.219 hybrid contribution -0.194 -0.477 -0.199 0.552 sum -10.323 -14.883 4.471 18.657 Atomic orbital electron populations 1.69971 1.04919 1.25056 1.56543 1.24815 0.95625 0.97758 1.02125 0.86146 0.78758 0.83636 0.77493 1.21659 1.21647 1.20637 1.19020 0.91020 0.82815 1.42955 0.90700 1.44165 1.09021 0.99978 1.79504 1.21135 0.94015 0.85861 0.97453 1.21775 0.96372 0.97083 0.95788 0.91506 1.21479 1.00926 0.95660 0.98389 1.20663 0.81927 0.98259 1.00309 1.47855 1.08217 1.52717 1.24381 1.16869 0.82370 0.78485 0.83990 1.90825 1.84290 1.45311 1.20743 1.24597 1.00780 1.00330 1.12399 1.20674 0.92001 0.99361 0.98264 1.19978 0.99153 0.96953 1.01880 1.25539 1.05219 0.99859 1.08340 1.83594 1.05437 1.12742 1.47788 1.22800 1.02621 0.91972 0.85309 1.21936 0.98250 0.93622 1.03030 1.22392 0.92400 0.98972 0.99043 0.91343 1.21073 0.85945 0.89211 0.97842 0.93801 0.96237 0.96048 0.90835 0.90528 0.92006 0.89829 0.83406 0.84040 0.81560 0.89507 0.89733 0.90370 0.91069 0.92755 0.95012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.60 55.49 0.59 -26.04 16 2 C -0.01 -0.19 5.41 -17.43 -0.09 -0.28 16 3 Si 0.91 21.98 29.56 -169.99 -5.03 16.96 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.38 10.21 -15.06 -0.15 -6.53 16 8 H 0.08 2.03 7.84 -52.49 -0.41 1.61 16 9 N -0.60 -15.11 3.38 -172.05 -0.58 -15.69 16 10 C 0.14 2.88 6.82 -3.78 -0.03 2.86 16 11 C -0.09 -1.47 2.78 -89.94 -0.25 -1.72 16 12 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 13 C -0.13 -1.91 4.77 -28.31 -0.14 -2.04 16 14 C 0.11 1.50 5.75 -6.27 -0.04 1.46 16 15 N -0.60 -8.05 2.61 -175.89 -0.46 -8.51 16 16 C 0.60 8.80 7.60 -12.90 -0.10 8.71 16 17 O -0.53 -9.56 16.56 5.19 0.09 -9.48 16 18 C -0.26 -3.21 5.67 -36.79 -0.21 -3.42 16 19 C -0.07 -0.75 10.21 -40.43 -0.41 -1.16 16 20 C -0.15 -1.30 10.15 -41.41 -0.42 -1.72 16 21 C -0.25 -2.13 10.92 29.18 0.32 -1.82 16 22 S 0.24 2.39 19.69 -107.50 -2.12 0.27 16 23 C 0.10 1.12 5.54 -2.39 -0.01 1.10 16 24 C -0.13 -1.85 4.45 -27.36 -0.12 -1.97 16 25 C -0.11 -1.84 2.93 -89.19 -0.26 -2.10 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 C 0.18 4.26 4.85 -3.33 -0.02 4.25 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.45 7.40 -51.93 -0.38 0.06 16 31 H 0.07 1.09 7.53 -51.93 -0.39 0.69 16 32 H 0.08 1.34 5.86 -51.93 -0.30 1.03 16 33 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 34 H 0.08 1.19 6.99 -51.93 -0.36 0.83 16 35 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.09 0.93 7.81 -51.93 -0.41 0.52 16 39 H 0.08 0.87 4.35 -32.04 -0.14 0.73 16 40 H 0.08 1.26 5.47 -51.93 -0.28 0.98 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 1.41 7.22 -51.93 -0.37 1.03 16 43 H 0.03 0.82 7.37 -51.93 -0.38 0.44 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -32.17 341.90 -10.20 -42.36 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.91 Total: -0.64 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.93 Total: -4.39 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.45 Total: -50.24 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.12 Total: 0.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.17 -10.20 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946460444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.063 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds