Wall clock time and date at job start Tue Mar 31 2020 12:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48501 * 109.47043 * 274.97189 * 3 2 1 5 5 H 1.48507 * 109.46756 * 34.96794 * 3 2 1 6 6 H 1.48494 * 109.47414 * 154.96846 * 3 2 1 7 7 C 1.38814 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00350 * 171.17760 * 7 2 1 9 9 N 1.36940 * 120.00038 * 351.18645 * 7 2 1 10 10 C 1.46593 * 125.31932 * 169.82300 * 9 7 2 11 11 C 1.53400 * 108.10861 * 178.64782 * 10 9 7 12 12 H 1.09002 * 110.26766 * 225.14984 * 11 10 9 13 13 C 1.51155 * 110.93197 * 102.74349 * 11 10 9 14 14 C 1.51726 * 111.88600 * 156.74763 * 13 11 10 15 15 N 1.43503 * 114.25616 * 82.64727 * 14 13 11 16 16 C 1.34780 * 122.55473 * 122.92283 * 15 14 13 17 17 O 1.21701 * 119.99410 * 356.61661 * 16 15 14 18 18 C 1.46579 * 119.99935 * 176.61387 * 16 15 14 19 19 C 1.36648 * 125.45499 * 220.90616 * 18 16 15 20 20 C 1.37474 * 113.29403 * 179.80439 * 19 18 16 21 21 C 1.33816 * 115.09996 * 0.49687 * 20 19 18 22 22 S 1.70612 * 110.95644 * 359.72803 * 21 20 19 23 23 C 1.49550 * 114.89852 * 302.93817 * 15 14 13 24 24 C 1.52921 * 105.32564 * 70.19387 * 23 15 14 25 25 C 1.51846 * 111.77238 * 258.92335 * 24 23 15 26 26 H 1.08996 * 110.53619 * 298.02106 * 25 24 23 27 27 C 1.46665 * 125.31582 * 349.81909 * 9 7 2 28 28 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.74794 * 58.98074 * 10 9 7 30 30 H 1.08997 * 109.74607 * 298.31607 * 10 9 7 31 31 H 1.08999 * 108.99658 * 36.12833 * 13 11 10 32 32 H 1.08998 * 108.93302 * 277.32733 * 13 11 10 33 33 H 1.08995 * 108.52765 * 321.40624 * 14 13 11 34 34 H 1.09001 * 108.52283 * 203.87880 * 14 13 11 35 35 H 1.07997 * 123.35682 * 0.02562 * 19 18 16 36 36 H 1.08001 * 122.44996 * 180.20923 * 20 19 18 37 37 H 1.08003 * 124.52070 * 179.70680 * 21 20 19 38 38 H 1.08998 * 110.26715 * 311.24707 * 23 15 14 39 39 H 1.08992 * 110.38921 * 189.20782 * 23 15 14 40 40 H 1.09001 * 109.00872 * 19.49231 * 24 23 15 41 41 H 1.08995 * 109.00498 * 138.35793 * 24 23 15 42 42 H 1.09007 * 109.96685 * 317.65061 * 27 9 7 43 43 H 1.08999 * 109.96808 * 78.86821 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3927 2.1070 -1.3948 5 1 1.5041 2.6201 0.8025 6 1 3.5963 1.4121 0.5924 7 6 2.0103 -1.2022 0.0005 8 1 3.0807 -1.2078 -0.1429 9 7 1.3377 -2.3810 0.1828 10 6 1.9070 -3.7191 -0.0032 11 6 0.8234 -4.7499 0.3381 12 1 1.2378 -5.5401 0.9641 13 6 0.2234 -5.3387 -0.9182 14 6 -0.3990 -6.6988 -0.6639 15 7 -1.7300 -6.6475 -0.1297 16 6 -2.7777 -7.2415 -0.7348 17 8 -2.6259 -7.7982 -1.8063 18 6 -4.0997 -7.2169 -0.1022 19 6 -4.9779 -8.2630 -0.0603 20 6 -6.1458 -7.9662 0.6015 21 6 -6.2276 -6.7178 1.0764 22 16 -4.8128 -5.8344 0.7174 23 6 -1.8662 -5.8845 1.1492 24 6 -1.6568 -4.4181 0.7692 25 6 -0.2568 -3.9414 1.1135 26 1 -0.0850 -4.0039 2.1880 27 6 -0.0647 -2.5021 0.5946 28 1 -0.4850 0.8401 -0.0004 29 1 2.7623 -3.8508 0.6596 30 1 2.2214 -3.8447 -1.0392 31 1 1.0055 -5.4414 -1.6704 32 1 -0.5438 -4.6621 -1.2944 33 1 0.2342 -7.2442 0.0358 34 1 -0.4243 -7.2494 -1.6043 35 1 -4.7735 -9.2280 -0.5000 36 1 -6.9411 -8.6864 0.7249 37 1 -7.0762 -6.3222 1.6148 38 1 -1.1047 -6.2023 1.8614 39 1 -2.8606 -6.0266 1.5722 40 1 -1.8177 -4.3026 -0.3026 41 1 -2.3821 -3.8056 1.3048 42 1 -0.2827 -1.7873 1.3882 43 1 -0.7198 -2.3226 -0.2579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946460444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:59 Heat of formation + Delta-G solvation = 15.822373 kcal Electronic energy + Delta-G solvation = -25278.653633 eV Core-core repulsion = 21836.602409 eV Total energy + Delta-G solvation = -3442.051224 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60817 -40.03857 -38.40848 -37.24895 -34.86982 -33.63700 -32.63199 -30.88044 -29.08753 -28.87846 -26.46012 -25.63437 -24.26077 -23.86755 -21.98540 -21.51180 -20.09795 -19.70213 -19.28875 -18.87859 -17.50400 -16.98974 -16.87646 -16.56000 -16.22306 -15.83534 -15.47927 -15.14701 -14.77090 -14.59123 -14.40636 -14.16639 -13.78388 -13.65107 -13.56697 -13.42372 -13.16097 -13.06101 -12.83904 -12.69809 -12.54530 -12.36683 -12.08582 -11.89957 -11.76504 -11.71604 -11.38965 -11.32780 -11.07273 -11.02915 -10.64268 -9.95499 -9.66080 -9.39878 -8.80962 -7.86834 -5.21229 -0.38306 0.42973 1.00004 1.45505 1.46314 1.48179 1.56253 1.86366 2.04927 2.50056 3.31050 3.39400 3.66075 3.74788 3.81656 3.95294 4.06146 4.14707 4.17982 4.24719 4.42064 4.46800 4.56662 4.60712 4.67237 4.67734 4.73970 4.90077 4.96322 5.03821 5.05091 5.10773 5.13562 5.20506 5.25715 5.28324 5.41056 5.46540 5.53708 5.60827 5.73853 5.83077 6.24125 6.26988 6.97716 7.12882 7.82486 8.45754 9.24311 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.003408 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.094144 B = 8215.131193 C = 9079.999317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.624 5.624 10 C 0.134 3.866 11 C -0.078 4.078 12 H 0.106 0.894 13 C -0.117 4.117 14 C 0.117 3.883 15 N -0.599 5.599 16 C 0.592 3.408 17 O -0.577 6.577 18 C -0.296 4.296 19 C -0.064 4.064 20 C -0.153 4.153 21 C -0.235 4.235 22 S 0.230 5.770 23 C 0.104 3.896 24 C -0.121 4.121 25 C -0.094 4.094 26 H 0.087 0.913 27 C 0.195 3.805 28 H 0.247 0.753 29 H 0.029 0.971 30 H 0.015 0.985 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.196 0.804 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.017 0.983 43 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 -17.487 6.864 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.350 5.350 10 C 0.009 3.991 11 C -0.097 4.097 12 H 0.124 0.876 13 C -0.155 4.155 14 C -0.007 4.007 15 N -0.330 5.330 16 C 0.381 3.619 17 O -0.459 6.459 18 C -0.416 4.416 19 C -0.098 4.098 20 C -0.183 4.183 21 C -0.372 4.372 22 S 0.497 5.503 23 C -0.018 4.018 24 C -0.159 4.159 25 C -0.113 4.113 26 H 0.106 0.894 27 C 0.069 3.931 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.169 0.831 36 H 0.188 0.812 37 H 0.213 0.787 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.035 0.965 43 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -10.718 -16.097 6.581 20.428 hybrid contribution -0.036 0.062 -0.817 0.820 sum -10.754 -16.035 5.764 20.150 Atomic orbital electron populations 1.70184 1.06287 1.25307 1.57661 1.25641 0.96508 1.01012 1.02451 0.85120 0.77938 0.79385 0.77224 1.21615 1.21781 1.19326 1.19401 0.91481 0.84306 1.42370 0.90555 1.44516 1.09817 1.01133 1.79525 1.21371 0.95626 0.84883 0.97265 1.21748 0.94713 0.96674 0.96527 0.87576 1.21371 1.00146 0.96069 0.97941 1.20596 0.82449 0.96856 1.00797 1.47927 1.07994 1.52339 1.24738 1.17258 0.83380 0.77765 0.83466 1.90788 1.85128 1.47389 1.22562 1.24460 1.00365 1.01984 1.14782 1.20949 0.92261 0.99156 0.97463 1.20231 0.99058 0.97685 1.01345 1.25904 1.04927 0.99280 1.07069 1.83587 1.06676 1.12333 1.47682 1.22850 1.04670 0.89408 0.84837 1.21804 0.96601 0.95875 1.01639 1.22258 0.94370 0.94790 0.99905 0.89429 1.20836 0.84565 0.92468 0.95191 0.94399 0.95318 0.96712 0.90690 0.93573 0.89090 0.90961 0.83140 0.81246 0.78674 0.87082 0.87952 0.92767 0.90407 0.96476 0.98937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.12 10.60 21.65 0.23 -56.89 16 2 C -0.06 -3.59 5.41 84.86 0.46 -3.13 16 3 Si 0.98 46.05 29.56 68.60 2.03 48.07 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.25 -14.00 10.21 84.03 0.86 -13.14 16 8 H 0.08 4.19 7.84 -2.91 -0.02 4.16 16 9 N -0.62 -32.13 3.38 -698.23 -2.36 -34.49 16 10 C 0.13 5.39 6.82 86.50 0.59 5.98 16 11 C -0.08 -2.38 2.78 -10.36 -0.03 -2.41 16 12 H 0.11 2.52 7.68 -2.39 -0.02 2.50 16 13 C -0.12 -3.47 4.77 29.57 0.14 -3.33 16 14 C 0.12 2.95 5.75 86.52 0.50 3.45 16 15 N -0.60 -15.34 2.61 -828.61 -2.17 -17.51 16 16 C 0.59 17.32 7.60 86.42 0.66 17.98 16 17 O -0.58 -21.07 16.56 -4.35 -0.07 -21.14 16 18 C -0.30 -6.96 5.67 24.08 0.14 -6.83 16 19 C -0.06 -1.26 10.21 21.72 0.22 -1.04 16 20 C -0.15 -2.19 10.15 21.08 0.21 -1.98 16 21 C -0.23 -3.19 10.92 66.81 0.73 -2.46 16 22 S 0.23 4.23 19.69 -56.49 -1.11 3.12 16 23 C 0.10 2.19 5.54 85.76 0.48 2.66 16 24 C -0.12 -3.35 4.45 30.19 0.13 -3.22 16 25 C -0.09 -3.10 2.93 -9.86 -0.03 -3.13 16 26 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 27 C 0.19 9.34 4.85 86.75 0.42 9.76 16 28 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.01 0.62 7.40 -2.39 -0.02 0.60 16 31 H 0.07 2.19 7.53 -2.39 -0.02 2.18 16 32 H 0.05 1.66 5.86 -2.39 -0.01 1.65 16 33 H 0.09 1.82 7.68 -2.39 -0.02 1.80 16 34 H 0.07 2.03 6.99 -2.39 -0.02 2.02 16 35 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.11 1.88 7.81 -2.39 -0.02 1.86 16 39 H 0.10 1.86 4.35 -15.04 -0.07 1.79 16 40 H 0.05 1.80 5.47 -2.39 -0.01 1.79 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.02 0.92 7.22 -2.38 -0.02 0.90 16 43 H -0.01 -0.41 7.37 -2.39 -0.02 -0.42 16 Total: -1.00 -73.90 341.90 2.99 -70.91 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.96 Total: 8.76 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.48 Total: -0.83 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.29 Total: -108.88 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.07 Total: -21.14 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.11 Total: 3.12 kcal Total: -73.90 2.99 -70.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946460444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.731 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds