Wall clock time and date at job start Tue Mar 31 2020 12:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00054 * 2 1 4 4 H 1.48499 * 109.46988 * 270.00364 * 3 2 1 5 5 H 1.48500 * 109.46978 * 29.99997 * 3 2 1 6 6 H 1.48494 * 109.47200 * 150.00400 * 3 2 1 7 7 C 1.38806 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00407 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.48662 * 125.78633 * 359.97438 * 9 7 2 11 11 C 1.53053 * 103.44435 * 155.65358 * 10 9 7 12 12 H 1.09007 * 110.56084 * 284.33711 * 11 10 9 13 13 C 1.51467 * 116.69318 * 155.85513 * 11 10 9 14 14 C 1.53819 * 107.10097 * 183.71413 * 13 11 10 15 15 C 1.52527 * 111.64266 * 57.56529 * 14 13 11 16 16 H 1.09003 * 109.04250 * 66.55555 * 15 14 13 17 17 N 1.46500 * 109.04020 * 185.50017 * 15 14 13 18 18 C 1.34768 * 120.00440 * 275.00099 * 17 15 14 19 19 O 1.21706 * 119.99726 * 359.97438 * 18 17 15 20 20 C 1.46585 * 120.00668 * 180.02562 * 18 17 15 21 21 C 1.36643 * 125.46331 * 180.02562 * 20 18 17 22 22 C 1.37474 * 113.29906 * 179.97438 * 21 20 18 23 23 C 1.33819 * 115.09962 * 359.97438 * 22 21 20 24 24 S 1.70616 * 110.95433 * 359.76425 * 23 22 21 25 25 C 1.53842 * 111.66023 * 305.98788 * 15 14 13 26 26 C 1.51442 * 107.03985 * 57.20492 * 25 15 14 27 27 H 1.08997 * 109.87508 * 54.18310 * 26 25 15 28 28 C 1.48902 * 125.69103 * 180.48049 * 9 7 2 29 29 H 0.96997 * 119.99813 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.62347 * 37.16326 * 10 9 7 31 31 H 1.08998 * 110.62520 * 274.14280 * 10 9 7 32 32 H 1.08991 * 109.85198 * 64.34133 * 13 11 10 33 33 H 1.09001 * 109.95726 * 303.14270 * 13 11 10 34 34 H 1.09002 * 109.03534 * 297.02845 * 14 13 11 35 35 H 1.09000 * 109.03112 * 178.09727 * 14 13 11 36 36 H 0.97007 * 119.99971 * 95.00084 * 17 15 14 37 37 H 1.07996 * 123.34888 * 359.97438 * 21 20 18 38 38 H 1.08003 * 122.44821 * 180.02562 * 22 21 20 39 39 H 1.07999 * 124.52200 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.93624 * 176.58100 * 25 15 14 41 41 H 1.08997 * 109.94018 * 297.73118 * 25 15 14 42 42 H 1.08999 * 110.55399 * 57.89299 * 28 9 7 43 43 H 1.09006 * 110.10781 * 295.87903 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1535 -2.5379 0.0005 11 6 -0.3713 -3.9228 -0.6136 12 1 -0.2176 -3.8917 -1.6923 13 6 -1.6659 -4.6266 -0.2630 14 6 -1.6135 -6.0199 -0.9126 15 6 -0.3983 -6.8137 -0.4439 16 1 -0.5069 -7.0368 0.6175 17 7 -0.3317 -8.0716 -1.1919 18 6 -1.0364 -9.1419 -0.7748 19 8 -1.7279 -9.0636 0.2237 20 6 -0.9693 -10.4007 -1.5228 21 6 -1.6350 -11.5501 -1.2018 22 6 -1.3912 -12.5820 -2.0768 23 6 -0.5557 -12.2899 -3.0805 24 16 -0.0259 -10.6711 -2.9818 25 6 0.9088 -6.0322 -0.6616 26 6 0.7702 -4.7199 0.0815 27 1 0.5097 -4.9094 1.1228 28 6 1.9385 -3.7450 0.0091 29 1 -0.4850 0.8400 0.0004 30 1 -0.6179 -1.7675 -0.6150 31 1 -0.5421 -2.5037 1.0183 32 1 -2.5117 -4.0639 -0.6579 33 1 -1.7553 -4.7239 0.8189 34 1 -1.5675 -5.9058 -1.9956 35 1 -2.5186 -6.5682 -0.6512 36 1 0.2198 -8.1342 -1.9876 37 1 -2.2876 -11.6390 -0.3460 38 1 -1.8417 -13.5570 -1.9629 39 1 -0.2593 -12.9850 -3.8521 40 1 1.7509 -6.5979 -0.2628 41 1 1.0573 -5.8449 -1.7250 42 1 2.5844 -3.8670 0.8785 43 1 2.5062 -3.9063 -0.9074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979481370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:54 Heat of formation + Delta-G solvation = 17.619150 kcal Electronic energy + Delta-G solvation = -24336.403006 eV Core-core repulsion = 20894.429696 eV Total energy + Delta-G solvation = -3441.973309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.27484 -38.97912 -37.72434 -35.63692 -33.59332 -31.86809 -30.93127 -29.96991 -28.60767 -26.33855 -25.41197 -24.64129 -22.09129 -21.94796 -20.53799 -19.75631 -19.69687 -19.44413 -18.64846 -16.70421 -16.40650 -16.02143 -15.37202 -15.19143 -14.88737 -14.33992 -14.23043 -13.88202 -13.76576 -13.37282 -13.16824 -13.09532 -12.67944 -12.46244 -12.19388 -12.03537 -11.86902 -11.61277 -11.36111 -11.31797 -10.92335 -10.83583 -10.64035 -10.47719 -10.25915 -10.03218 -9.88119 -9.84681 -9.57925 -9.32843 -9.22260 -9.00732 -8.93960 -8.62203 -6.79376 -5.60800 -3.01597 0.17192 1.10586 1.50761 2.07425 2.95791 3.02526 3.42248 3.47074 3.49248 4.50656 4.51954 4.62586 4.81620 4.91362 4.94379 5.11227 5.19949 5.34605 5.39928 5.52968 5.57878 5.65269 5.68225 5.69579 5.79709 5.82334 5.95258 6.06648 6.17443 6.18508 6.26365 6.29559 6.41647 6.45951 6.59079 6.66678 6.70940 6.89429 7.06727 7.30947 7.58926 7.64994 7.90068 8.00290 8.37372 9.24412 9.85204 10.52436 11.43650 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.036783 B = 0.002407 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.030046 B =11629.305387 C =11996.218164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.164 3.836 11 C -0.115 4.115 12 H 0.069 0.931 13 C -0.097 4.097 14 C -0.125 4.125 15 C 0.149 3.851 16 H 0.088 0.912 17 N -0.721 5.721 18 C 0.589 3.411 19 O -0.528 6.528 20 C -0.263 4.263 21 C -0.059 4.059 22 C -0.150 4.150 23 C -0.232 4.232 24 S 0.201 5.799 25 C -0.107 4.107 26 C -0.104 4.104 27 H 0.070 0.930 28 C 0.144 3.856 29 H 0.251 0.749 30 H 0.104 0.896 31 H 0.013 0.987 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -24.577 -7.246 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.094 0.906 9 N -0.336 5.336 10 C 0.040 3.960 11 C -0.135 4.135 12 H 0.088 0.912 13 C -0.136 4.136 14 C -0.163 4.163 15 C 0.046 3.954 16 H 0.106 0.894 17 N -0.371 5.371 18 C 0.374 3.626 19 O -0.406 6.406 20 C -0.383 4.383 21 C -0.092 4.092 22 C -0.181 4.181 23 C -0.370 4.370 24 S 0.467 5.533 25 C -0.145 4.145 26 C -0.124 4.124 27 H 0.088 0.912 28 C 0.018 3.982 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.230 0.770 37 H 0.172 0.828 38 H 0.163 0.837 39 H 0.186 0.814 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.588 -23.378 -7.403 24.574 hybrid contribution -0.188 -0.356 0.421 0.583 sum -1.775 -23.734 -6.982 24.804 Atomic orbital electron populations 1.69818 1.04832 1.24649 1.57873 1.24773 0.95734 0.97609 1.02797 0.86088 0.78505 0.83499 0.77508 1.21685 1.21713 1.20821 1.19091 0.90462 0.82565 1.42629 0.90596 1.45303 1.01678 0.99460 1.87118 1.21635 0.84343 0.92079 0.97982 1.22365 0.93193 0.98133 0.99803 0.91228 1.21208 0.98245 0.93683 1.00465 1.21910 0.97336 0.96426 1.00665 1.21183 0.95679 0.81627 0.96917 0.89356 1.46079 1.48364 1.11879 1.30747 1.16961 0.79821 0.81944 0.83855 1.90843 1.40492 1.83781 1.25506 1.24754 1.10156 0.99705 1.03725 1.20831 0.98085 0.90386 0.99904 1.20071 1.01317 1.01132 0.95562 1.25337 1.05002 1.01714 1.04945 1.83071 1.43946 1.05236 1.20999 1.21551 0.95438 0.96273 1.01251 1.21714 0.98263 0.93170 0.99251 0.91158 1.21072 0.93426 0.85898 0.97773 0.93826 0.87801 0.96939 0.91547 0.91787 0.92129 0.91966 0.77017 0.82849 0.83696 0.81379 0.91611 0.91251 0.95678 0.95865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.11 55.49 0.56 -26.55 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.16 10.30 -15.06 -0.16 -6.31 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.69 3.46 -169.87 -0.59 -16.28 16 10 C 0.16 3.96 5.52 -2.82 -0.02 3.94 16 11 C -0.12 -2.13 2.49 -89.97 -0.22 -2.35 16 12 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 13 C -0.10 -1.53 5.69 -27.08 -0.15 -1.68 16 14 C -0.12 -1.71 5.38 -26.55 -0.14 -1.85 16 15 C 0.15 1.96 2.44 -67.73 -0.17 1.79 16 16 H 0.09 1.31 7.52 -51.93 -0.39 0.92 16 17 N -0.72 -8.21 5.03 -54.95 -0.28 -8.49 16 18 C 0.59 7.60 7.74 -12.90 -0.10 7.50 16 19 O -0.53 -8.69 16.47 5.18 0.09 -8.60 16 20 C -0.26 -2.72 6.45 -36.79 -0.24 -2.95 16 21 C -0.06 -0.55 10.01 -40.44 -0.40 -0.95 16 22 C -0.15 -1.06 10.15 -41.41 -0.42 -1.48 16 23 C -0.23 -1.48 10.92 29.18 0.32 -1.16 16 24 S 0.20 1.45 22.16 -107.50 -2.38 -0.93 16 25 C -0.11 -1.41 5.16 -27.08 -0.14 -1.55 16 26 C -0.10 -1.79 2.28 -90.36 -0.21 -1.99 16 27 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 28 C 0.14 2.97 7.04 -3.06 -0.02 2.95 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.10 2.84 5.93 -51.93 -0.31 2.53 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.40 3.58 7.72 -40.82 -0.32 3.27 16 37 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.15 0.71 8.06 -52.48 -0.42 0.28 16 39 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -32.37 355.56 -10.87 -43.24 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.44 Total: 1.63 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.16 Total: -6.61 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.30 Total: -51.32 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.38 Total: -0.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.37 -10.87 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979481370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.862 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds