Wall clock time and date at job start Tue Mar 31 2020 12:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00054 * 2 1 4 4 H 1.48499 * 109.46988 * 270.00364 * 3 2 1 5 5 H 1.48500 * 109.46978 * 29.99997 * 3 2 1 6 6 H 1.48494 * 109.47200 * 150.00400 * 3 2 1 7 7 C 1.38806 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00407 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.48662 * 125.78633 * 359.97438 * 9 7 2 11 11 C 1.53053 * 103.44435 * 155.65358 * 10 9 7 12 12 H 1.09007 * 110.56084 * 284.33711 * 11 10 9 13 13 C 1.51467 * 116.69318 * 155.85513 * 11 10 9 14 14 C 1.53819 * 107.10097 * 183.71413 * 13 11 10 15 15 C 1.52527 * 111.64266 * 57.56529 * 14 13 11 16 16 H 1.09003 * 109.04250 * 66.55555 * 15 14 13 17 17 N 1.46500 * 109.04020 * 185.50017 * 15 14 13 18 18 C 1.34768 * 120.00440 * 275.00099 * 17 15 14 19 19 O 1.21706 * 119.99726 * 359.97438 * 18 17 15 20 20 C 1.46585 * 120.00668 * 180.02562 * 18 17 15 21 21 C 1.36643 * 125.46331 * 180.02562 * 20 18 17 22 22 C 1.37474 * 113.29906 * 179.97438 * 21 20 18 23 23 C 1.33819 * 115.09962 * 359.97438 * 22 21 20 24 24 S 1.70616 * 110.95433 * 359.76425 * 23 22 21 25 25 C 1.53842 * 111.66023 * 305.98788 * 15 14 13 26 26 C 1.51442 * 107.03985 * 57.20492 * 25 15 14 27 27 H 1.08997 * 109.87508 * 54.18310 * 26 25 15 28 28 C 1.48902 * 125.69103 * 180.48049 * 9 7 2 29 29 H 0.96997 * 119.99813 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.62347 * 37.16326 * 10 9 7 31 31 H 1.08998 * 110.62520 * 274.14280 * 10 9 7 32 32 H 1.08991 * 109.85198 * 64.34133 * 13 11 10 33 33 H 1.09001 * 109.95726 * 303.14270 * 13 11 10 34 34 H 1.09002 * 109.03534 * 297.02845 * 14 13 11 35 35 H 1.09000 * 109.03112 * 178.09727 * 14 13 11 36 36 H 0.97007 * 119.99971 * 95.00084 * 17 15 14 37 37 H 1.07996 * 123.34888 * 359.97438 * 21 20 18 38 38 H 1.08003 * 122.44821 * 180.02562 * 22 21 20 39 39 H 1.07999 * 124.52200 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.93624 * 176.58100 * 25 15 14 41 41 H 1.08997 * 109.94018 * 297.73118 * 25 15 14 42 42 H 1.08999 * 110.55399 * 57.89299 * 28 9 7 43 43 H 1.09006 * 110.10781 * 295.87903 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1535 -2.5379 0.0005 11 6 -0.3713 -3.9228 -0.6136 12 1 -0.2176 -3.8917 -1.6923 13 6 -1.6659 -4.6266 -0.2630 14 6 -1.6135 -6.0199 -0.9126 15 6 -0.3983 -6.8137 -0.4439 16 1 -0.5069 -7.0368 0.6175 17 7 -0.3317 -8.0716 -1.1919 18 6 -1.0364 -9.1419 -0.7748 19 8 -1.7279 -9.0636 0.2237 20 6 -0.9693 -10.4007 -1.5228 21 6 -1.6350 -11.5501 -1.2018 22 6 -1.3912 -12.5820 -2.0768 23 6 -0.5557 -12.2899 -3.0805 24 16 -0.0259 -10.6711 -2.9818 25 6 0.9088 -6.0322 -0.6616 26 6 0.7702 -4.7199 0.0815 27 1 0.5097 -4.9094 1.1228 28 6 1.9385 -3.7450 0.0091 29 1 -0.4850 0.8400 0.0004 30 1 -0.6179 -1.7675 -0.6150 31 1 -0.5421 -2.5037 1.0183 32 1 -2.5117 -4.0639 -0.6579 33 1 -1.7553 -4.7239 0.8189 34 1 -1.5675 -5.9058 -1.9956 35 1 -2.5186 -6.5682 -0.6512 36 1 0.2198 -8.1342 -1.9876 37 1 -2.2876 -11.6390 -0.3460 38 1 -1.8417 -13.5570 -1.9629 39 1 -0.2593 -12.9850 -3.8521 40 1 1.7509 -6.5979 -0.2628 41 1 1.0573 -5.8449 -1.7250 42 1 2.5844 -3.8670 0.8785 43 1 2.5062 -3.9063 -0.9074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979481370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:53 Heat of formation + Delta-G solvation = -2.051688 kcal Electronic energy + Delta-G solvation = -24337.255997 eV Core-core repulsion = 20894.429696 eV Total energy + Delta-G solvation = -3442.826301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39171 -40.23386 -38.44154 -37.05381 -35.08184 -33.57789 -32.19277 -31.07470 -30.03176 -27.83264 -26.91171 -25.69214 -23.59581 -22.93211 -21.71818 -21.42043 -20.96431 -20.22512 -19.51291 -18.75452 -17.25611 -16.94029 -16.79662 -16.24318 -16.16135 -15.78707 -15.60934 -15.35882 -14.89116 -14.71667 -14.10882 -13.93104 -13.70778 -13.57814 -13.53358 -13.43806 -13.27942 -13.03465 -12.93912 -12.73924 -12.64846 -12.13714 -11.94421 -11.92944 -11.76323 -11.71815 -11.49947 -11.29883 -11.04817 -10.82299 -10.70337 -10.21402 -9.81106 -9.50337 -8.86836 -7.74828 -5.18573 -0.47975 0.51145 0.94937 1.43192 1.46682 1.48876 1.57400 2.02179 2.16495 2.50773 3.34892 3.55621 3.62240 3.66202 3.77084 3.96990 4.09787 4.16351 4.34103 4.37762 4.43242 4.45296 4.55184 4.56706 4.67943 4.71489 4.78328 4.95955 5.00204 5.03985 5.05791 5.11041 5.19196 5.24964 5.25757 5.36455 5.37975 5.43810 5.47992 5.56259 5.75610 5.85171 6.30718 6.41852 7.08687 7.10932 7.77671 8.44814 9.27585 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.036783 B = 0.002407 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.030046 B =11629.305387 C =11996.218164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.634 5.634 10 C 0.167 3.833 11 C -0.101 4.101 12 H 0.072 0.928 13 C -0.092 4.092 14 C -0.114 4.114 15 C 0.156 3.844 16 H 0.071 0.929 17 N -0.709 5.709 18 C 0.587 3.413 19 O -0.574 6.574 20 C -0.303 4.303 21 C -0.062 4.062 22 C -0.161 4.161 23 C -0.219 4.219 24 S 0.239 5.761 25 C -0.094 4.094 26 C -0.091 4.091 27 H 0.063 0.937 28 C 0.139 3.861 29 H 0.245 0.755 30 H 0.069 0.931 31 H -0.017 1.017 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.410 0.590 37 H 0.145 0.855 38 H 0.168 0.832 39 H 0.200 0.800 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.026 0.974 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 -27.012 -9.261 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.360 5.360 10 C 0.043 3.957 11 C -0.121 4.121 12 H 0.091 0.909 13 C -0.131 4.131 14 C -0.153 4.153 15 C 0.052 3.948 16 H 0.089 0.911 17 N -0.360 5.360 18 C 0.375 3.625 19 O -0.456 6.456 20 C -0.423 4.423 21 C -0.097 4.097 22 C -0.191 4.191 23 C -0.357 4.357 24 S 0.506 5.494 25 C -0.132 4.132 26 C -0.110 4.110 27 H 0.082 0.918 28 C 0.015 3.985 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.001 0.999 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.247 0.753 37 H 0.162 0.838 38 H 0.185 0.815 39 H 0.217 0.783 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.044 0.956 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.183 -25.846 -9.453 27.521 hybrid contribution -0.582 0.340 1.026 1.227 sum -0.765 -25.506 -8.427 26.873 Atomic orbital electron populations 1.70086 1.06210 1.24868 1.58926 1.25640 0.96662 1.00971 1.03158 0.85048 0.77502 0.79089 0.77523 1.21089 1.22237 1.19587 1.19484 0.91013 0.83892 1.42003 0.90144 1.45664 1.02509 1.00838 1.87035 1.21386 0.83782 0.94581 0.95974 1.22135 0.95422 0.95060 0.99448 0.90943 1.21145 0.96788 0.94795 1.00331 1.21793 0.97581 0.94730 1.01203 1.20939 0.95284 0.82284 0.96291 0.91090 1.45867 1.48284 1.10896 1.30921 1.17327 0.78944 0.82839 0.83373 1.90813 1.42486 1.84670 1.27621 1.24605 1.12862 0.98870 1.05959 1.21014 0.97634 0.90957 1.00075 1.20242 1.01938 1.01545 0.95363 1.25798 1.03383 1.01718 1.04822 1.82891 1.42453 1.05590 1.18450 1.21447 0.96121 0.93939 1.01696 1.21594 0.95797 0.94234 0.99415 0.91845 1.21258 0.94653 0.84410 0.98219 0.94488 0.91314 0.99946 0.91412 0.92473 0.90702 0.92394 0.75344 0.83756 0.81507 0.78320 0.89602 0.89593 0.95605 0.94545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.89 10.11 21.65 0.22 -57.67 16 2 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 3 Si 0.98 46.40 29.55 68.60 2.03 48.42 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.23 -13.40 10.30 84.03 0.87 -12.53 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -33.26 3.46 -691.34 -2.40 -35.66 16 10 C 0.17 8.41 5.52 85.98 0.48 8.89 16 11 C -0.10 -3.74 2.49 -10.38 -0.03 -3.76 16 12 H 0.07 2.66 8.04 -2.38 -0.02 2.64 16 13 C -0.09 -2.88 5.69 30.37 0.17 -2.71 16 14 C -0.11 -3.00 5.38 30.71 0.17 -2.83 16 15 C 0.16 3.86 2.44 45.12 0.11 3.97 16 16 H 0.07 2.06 7.52 -2.39 -0.02 2.04 16 17 N -0.71 -14.84 5.03 -445.99 -2.24 -17.08 16 18 C 0.59 14.74 7.74 86.42 0.67 15.40 16 19 O -0.57 -19.17 16.47 -4.37 -0.07 -19.25 16 20 C -0.30 -5.84 6.45 24.08 0.16 -5.68 16 21 C -0.06 -1.09 10.01 21.72 0.22 -0.88 16 22 C -0.16 -1.86 10.15 21.08 0.21 -1.64 16 23 C -0.22 -1.98 10.92 66.81 0.73 -1.25 16 24 S 0.24 2.72 22.16 -56.49 -1.25 1.46 16 25 C -0.09 -2.25 5.16 30.37 0.16 -2.09 16 26 C -0.09 -3.02 2.28 -10.62 -0.02 -3.05 16 27 H 0.06 2.21 7.91 -2.39 -0.02 2.19 16 28 C 0.14 5.65 7.04 85.69 0.60 6.26 16 29 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.07 3.95 5.93 -2.39 -0.01 3.93 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.86 7.98 -2.39 -0.02 1.84 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.41 6.23 7.72 -92.70 -0.72 5.52 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.20 0.54 8.06 -2.91 -0.02 0.52 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 1.84 8.05 -2.39 -0.02 1.82 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.04 1.40 8.08 -2.38 -0.02 1.38 16 Total: -1.00 -73.22 355.56 1.53 -71.68 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.30 Total: 13.70 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 4.95 Total: -5.61 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.42 Total: -110.41 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.07 Total: -19.25 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.25 Total: 1.46 kcal Total: -73.22 1.53 -71.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979481370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.633 kcal (2) G-P(sol) polarization free energy of solvation -73.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds