Wall clock time and date at job start Tue Mar 31 2020 12:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48505 * 109.47025 * 265.41026 * 3 2 1 5 5 H 1.48497 * 109.47199 * 25.41166 * 3 2 1 6 6 H 1.48500 * 109.46991 * 145.41073 * 3 2 1 7 7 C 1.38809 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99902 * 336.95756 * 7 2 1 9 9 N 1.36938 * 120.00453 * 156.95107 * 7 2 1 10 10 C 1.48649 * 125.78656 * 161.89822 * 9 7 2 11 11 C 1.53068 * 103.44518 * 155.64651 * 10 9 7 12 12 H 1.08993 * 110.55224 * 284.33833 * 11 10 9 13 13 C 1.51616 * 117.49373 * 156.25105 * 11 10 9 14 14 C 1.51815 * 108.05105 * 184.08214 * 13 11 10 15 15 C 1.52531 * 111.88518 * 56.86447 * 14 13 11 16 16 H 1.09008 * 108.97648 * 66.91068 * 15 14 13 17 17 N 1.46494 * 109.04538 * 185.82226 * 15 14 13 18 18 C 1.34774 * 120.00763 * 277.16497 * 17 15 14 19 19 O 1.21642 * 119.99511 * 359.97438 * 18 17 15 20 20 C 1.47187 * 120.00321 * 179.97438 * 18 17 15 21 21 C 1.44425 * 123.45980 * 180.22144 * 20 18 17 22 22 C 1.32768 * 113.08232 * 180.19685 * 21 20 18 23 23 S 1.75501 * 110.57486 * 359.59556 * 22 21 20 24 24 C 1.36007 * 123.46311 * 359.97438 * 20 18 17 25 25 C 1.53840 * 111.66381 * 306.39380 * 15 14 13 26 26 C 1.51439 * 107.04408 * 57.19061 * 25 15 14 27 27 H 1.09003 * 109.87246 * 54.19901 * 26 25 15 28 28 C 1.48239 * 125.78129 * 341.92907 * 9 7 2 29 29 H 0.96996 * 119.99871 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.63089 * 37.15728 * 10 9 7 31 31 H 1.08997 * 110.76745 * 274.20417 * 10 9 7 32 32 H 1.08996 * 109.94611 * 302.68800 * 13 11 10 33 33 H 1.08996 * 109.94328 * 63.93832 * 13 11 10 34 34 H 1.08999 * 108.59421 * 296.47583 * 14 13 11 35 35 H 1.09000 * 109.28883 * 177.72321 * 14 13 11 36 36 H 0.97005 * 119.99600 * 97.15719 * 17 15 14 37 37 H 1.08001 * 123.45869 * 0.03911 * 21 20 18 38 38 H 1.08002 * 124.71307 * 179.85420 * 22 21 20 39 39 H 1.07997 * 124.58707 * 359.96622 * 24 20 18 40 40 H 1.09001 * 109.93675 * 176.58143 * 25 15 14 41 41 H 1.08999 * 109.93545 * 297.72741 * 25 15 14 42 42 H 1.09001 * 110.17202 * 57.69328 * 28 9 7 43 43 H 1.08998 * 110.17511 * 295.89349 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5947 1.9904 -1.3956 5 1 1.4025 2.6787 0.6008 6 1 3.4959 1.4701 0.7948 7 6 2.0103 -1.2021 -0.0005 8 1 1.5349 -2.1003 0.3652 9 7 3.2977 -1.2493 -0.4648 10 6 4.2815 -2.3295 -0.1909 11 6 5.2505 -2.2362 -1.3721 12 1 4.8004 -2.6583 -2.2705 13 6 6.6511 -2.7819 -1.1732 14 6 7.4522 -2.4905 -2.4294 15 6 7.4735 -1.0010 -2.7574 16 1 8.0343 -0.4757 -1.9842 17 7 8.1399 -0.8050 -4.0472 18 6 9.4852 -0.7537 -4.1100 19 8 10.1461 -0.8697 -3.0954 20 6 10.1546 -0.5574 -5.4060 21 6 11.5893 -0.4956 -5.5599 22 6 11.9702 -0.3084 -6.8179 23 16 10.5743 -0.2107 -7.8770 24 6 9.4858 -0.4204 -6.5823 25 6 6.0528 -0.4156 -2.8322 26 6 5.3883 -0.6915 -1.4997 27 1 6.0077 -0.3059 -0.6899 28 6 3.9466 -0.2315 -1.3254 29 1 -0.4850 0.8400 0.0004 30 1 3.7893 -3.3019 -0.1738 31 1 4.8030 -2.1480 0.7489 32 1 7.1278 -2.2836 -0.3291 33 1 6.6098 -3.8567 -0.9969 34 1 7.0023 -3.0313 -3.2619 35 1 8.4759 -2.8389 -2.2925 36 1 7.6127 -0.7123 -4.8563 37 1 12.2811 -0.5893 -4.7359 38 1 12.9967 -0.2315 -7.1447 39 1 8.4107 -0.4421 -6.6825 40 1 6.1024 0.6590 -3.0076 41 1 5.4940 -0.8976 -3.6345 42 1 3.9195 0.7439 -0.8396 43 1 3.4475 -0.1841 -2.2932 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979512056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:16 Heat of formation + Delta-G solvation = 22.911262 kcal Electronic energy + Delta-G solvation = -24517.990915 eV Core-core repulsion = 21076.247089 eV Total energy + Delta-G solvation = -3441.743826 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50744 -39.28833 -37.17182 -35.87144 -33.78982 -31.95628 -31.32488 -30.26731 -28.90730 -26.91371 -25.47349 -24.72498 -22.22230 -21.89347 -20.66467 -20.31757 -20.00347 -19.26031 -18.46055 -17.32572 -16.85159 -16.03841 -15.53963 -15.18270 -14.93677 -14.39970 -14.35202 -14.10152 -13.68450 -13.50437 -13.42676 -13.17460 -12.85470 -12.67793 -12.53508 -12.43571 -12.13068 -12.05153 -11.60213 -11.48889 -11.30753 -10.83567 -10.77306 -10.64919 -10.40532 -10.17920 -10.15093 -9.84534 -9.73088 -9.48769 -9.29442 -9.09382 -8.81992 -8.59242 -7.04234 -5.92310 -3.20384 0.36780 1.12302 1.49767 1.66891 2.94907 3.13846 3.35596 3.49104 3.52887 4.32311 4.56471 4.57288 4.65428 4.70415 4.84474 4.85057 4.96653 5.00310 5.16640 5.38034 5.40194 5.42257 5.46019 5.52339 5.56739 5.67889 5.81652 5.86488 5.91658 6.00188 6.05532 6.09083 6.14043 6.20577 6.27715 6.37201 6.46122 6.49564 6.66778 6.84336 6.90147 7.30742 7.68879 8.02480 8.33268 8.83976 9.71177 10.21116 11.24525 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023496 B = 0.002696 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.400358 B =10382.225012 C =10963.777312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.890 3.110 4 H -0.287 1.287 5 H -0.305 1.305 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.093 0.907 9 N -0.614 5.614 10 C 0.141 3.859 11 C -0.105 4.105 12 H 0.078 0.922 13 C -0.100 4.100 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.087 0.913 17 N -0.720 5.720 18 C 0.576 3.424 19 O -0.536 6.536 20 C -0.152 4.152 21 C -0.085 4.085 22 C -0.237 4.237 23 S 0.184 5.816 24 C -0.213 4.213 25 C -0.109 4.109 26 C -0.103 4.103 27 H 0.074 0.926 28 C 0.130 3.870 29 H 0.262 0.738 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.154 0.846 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.220 -2.013 -16.714 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.722 3.278 4 H -0.215 1.215 5 H -0.234 1.234 6 H -0.207 1.207 7 C -0.365 4.365 8 H 0.110 0.890 9 N -0.341 5.341 10 C 0.016 3.984 11 C -0.124 4.124 12 H 0.096 0.904 13 C -0.139 4.139 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.105 0.895 17 N -0.370 5.370 18 C 0.361 3.639 19 O -0.413 6.413 20 C -0.171 4.171 21 C -0.114 4.114 22 C -0.372 4.372 23 S 0.450 5.550 24 C -0.351 4.351 25 C -0.148 4.148 26 C -0.123 4.123 27 H 0.093 0.907 28 C 0.005 3.995 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.188 0.812 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 23.270 -1.801 -17.486 29.164 hybrid contribution 0.250 0.949 1.173 1.529 sum 23.520 -0.851 -16.313 28.636 Atomic orbital electron populations 1.69850 1.05498 1.26487 1.53556 1.24951 0.95151 0.97351 1.00482 0.86858 0.78724 0.84699 0.77492 1.21507 1.23377 1.20699 1.18681 0.84734 0.95471 1.37615 0.88983 1.45400 1.10262 1.21933 1.56526 1.21344 0.89920 0.92843 0.94255 1.22109 0.94740 0.95119 1.00429 0.90366 1.20899 0.94610 1.01021 0.97337 1.21532 1.00764 0.95285 0.98688 1.21132 0.93001 0.96467 0.84860 0.89481 1.46020 1.06081 1.73854 1.11090 1.17605 0.82066 0.76436 0.87751 1.90801 1.64756 1.49889 1.35894 1.20387 0.93881 1.09432 0.93377 1.21169 0.93539 0.99446 0.97287 1.25539 1.03123 1.11654 0.96882 1.83111 0.94644 1.68035 1.09251 1.25710 1.05239 1.06588 0.97565 1.21557 0.93750 1.00958 0.98498 1.21728 0.96972 0.97068 0.96507 0.90722 1.21304 0.90387 0.92892 0.94893 0.92785 0.93233 0.95532 0.91701 0.91404 0.92089 0.91531 0.76799 0.82801 0.81266 0.81206 0.91249 0.90908 0.95363 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.37 13.97 55.49 0.78 -27.60 16 2 C 0.02 0.56 5.44 -17.43 -0.09 0.46 16 3 Si 0.89 23.20 24.37 -169.99 -4.14 19.06 16 4 H -0.29 -7.19 6.86 56.52 0.39 -6.80 16 5 H -0.31 -8.05 7.11 56.52 0.40 -7.64 16 6 H -0.28 -7.24 6.87 56.52 0.39 -6.85 16 7 C -0.24 -6.83 10.59 -15.06 -0.16 -6.99 16 8 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 9 N -0.61 -14.98 3.26 -170.42 -0.56 -15.53 16 10 C 0.14 2.77 6.93 -2.82 -0.02 2.75 16 11 C -0.10 -1.64 2.48 -89.90 -0.22 -1.86 16 12 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 13 C -0.10 -1.28 5.61 -28.03 -0.16 -1.44 16 14 C -0.12 -1.48 5.29 -27.57 -0.15 -1.62 16 15 C 0.15 1.80 2.42 -67.74 -0.16 1.64 16 16 H 0.09 1.21 7.58 -51.92 -0.39 0.82 16 17 N -0.72 -7.48 5.03 -54.76 -0.28 -7.75 16 18 C 0.58 7.01 7.72 -12.63 -0.10 6.91 16 19 O -0.54 -8.45 16.40 5.24 0.09 -8.36 16 20 C -0.15 -1.49 5.98 -104.63 -0.63 -2.11 16 21 C -0.09 -0.76 10.10 -39.02 -0.39 -1.15 16 22 C -0.24 -1.57 11.12 28.86 0.32 -1.25 16 23 S 0.18 1.07 23.02 -107.50 -2.47 -1.40 16 24 C -0.21 -1.53 10.38 29.93 0.31 -1.22 16 25 C -0.11 -1.40 5.15 -27.08 -0.14 -1.54 16 26 C -0.10 -1.70 2.31 -90.36 -0.21 -1.91 16 27 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 28 C 0.13 2.81 5.07 -3.43 -0.02 2.79 16 29 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.85 7.99 -51.93 -0.41 0.43 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.40 3.07 7.09 -40.82 -0.29 2.78 16 37 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.17 0.84 7.01 -52.49 -0.37 0.47 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 42 H 0.03 0.68 3.22 -51.93 -0.17 0.51 16 43 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -34.09 349.74 -9.40 -43.49 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.26 Total: -0.64 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.82 Total: -6.54 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.06 Total: -50.88 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.14 Total: 19.06 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.47 Total: -1.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.09 -9.40 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979512056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.401 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds