Wall clock time and date at job start Tue Mar 31 2020 12:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48505 * 109.47025 * 265.41026 * 3 2 1 5 5 H 1.48497 * 109.47199 * 25.41166 * 3 2 1 6 6 H 1.48500 * 109.46991 * 145.41073 * 3 2 1 7 7 C 1.38809 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99902 * 336.95756 * 7 2 1 9 9 N 1.36938 * 120.00453 * 156.95107 * 7 2 1 10 10 C 1.48649 * 125.78656 * 161.89822 * 9 7 2 11 11 C 1.53068 * 103.44518 * 155.64651 * 10 9 7 12 12 H 1.08993 * 110.55224 * 284.33833 * 11 10 9 13 13 C 1.51616 * 117.49373 * 156.25105 * 11 10 9 14 14 C 1.51815 * 108.05105 * 184.08214 * 13 11 10 15 15 C 1.52531 * 111.88518 * 56.86447 * 14 13 11 16 16 H 1.09008 * 108.97648 * 66.91068 * 15 14 13 17 17 N 1.46494 * 109.04538 * 185.82226 * 15 14 13 18 18 C 1.34774 * 120.00763 * 277.16497 * 17 15 14 19 19 O 1.21642 * 119.99511 * 359.97438 * 18 17 15 20 20 C 1.47187 * 120.00321 * 179.97438 * 18 17 15 21 21 C 1.44425 * 123.45980 * 180.22144 * 20 18 17 22 22 C 1.32768 * 113.08232 * 180.19685 * 21 20 18 23 23 S 1.75501 * 110.57486 * 359.59556 * 22 21 20 24 24 C 1.36007 * 123.46311 * 359.97438 * 20 18 17 25 25 C 1.53840 * 111.66381 * 306.39380 * 15 14 13 26 26 C 1.51439 * 107.04408 * 57.19061 * 25 15 14 27 27 H 1.09003 * 109.87246 * 54.19901 * 26 25 15 28 28 C 1.48239 * 125.78129 * 341.92907 * 9 7 2 29 29 H 0.96996 * 119.99871 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.63089 * 37.15728 * 10 9 7 31 31 H 1.08997 * 110.76745 * 274.20417 * 10 9 7 32 32 H 1.08996 * 109.94611 * 302.68800 * 13 11 10 33 33 H 1.08996 * 109.94328 * 63.93832 * 13 11 10 34 34 H 1.08999 * 108.59421 * 296.47583 * 14 13 11 35 35 H 1.09000 * 109.28883 * 177.72321 * 14 13 11 36 36 H 0.97005 * 119.99600 * 97.15719 * 17 15 14 37 37 H 1.08001 * 123.45869 * 0.03911 * 21 20 18 38 38 H 1.08002 * 124.71307 * 179.85420 * 22 21 20 39 39 H 1.07997 * 124.58707 * 359.96622 * 24 20 18 40 40 H 1.09001 * 109.93675 * 176.58143 * 25 15 14 41 41 H 1.08999 * 109.93545 * 297.72741 * 25 15 14 42 42 H 1.09001 * 110.17202 * 57.69328 * 28 9 7 43 43 H 1.08998 * 110.17511 * 295.89349 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5947 1.9904 -1.3956 5 1 1.4025 2.6787 0.6008 6 1 3.4959 1.4701 0.7948 7 6 2.0103 -1.2021 -0.0005 8 1 1.5349 -2.1003 0.3652 9 7 3.2977 -1.2493 -0.4648 10 6 4.2815 -2.3295 -0.1909 11 6 5.2505 -2.2362 -1.3721 12 1 4.8004 -2.6583 -2.2705 13 6 6.6511 -2.7819 -1.1732 14 6 7.4522 -2.4905 -2.4294 15 6 7.4735 -1.0010 -2.7574 16 1 8.0343 -0.4757 -1.9842 17 7 8.1399 -0.8050 -4.0472 18 6 9.4852 -0.7537 -4.1100 19 8 10.1461 -0.8697 -3.0954 20 6 10.1546 -0.5574 -5.4060 21 6 11.5893 -0.4956 -5.5599 22 6 11.9702 -0.3084 -6.8179 23 16 10.5743 -0.2107 -7.8770 24 6 9.4858 -0.4204 -6.5823 25 6 6.0528 -0.4156 -2.8322 26 6 5.3883 -0.6915 -1.4997 27 1 6.0077 -0.3059 -0.6899 28 6 3.9466 -0.2315 -1.3254 29 1 -0.4850 0.8400 0.0004 30 1 3.7893 -3.3019 -0.1738 31 1 4.8030 -2.1480 0.7489 32 1 7.1278 -2.2836 -0.3291 33 1 6.6098 -3.8567 -0.9969 34 1 7.0023 -3.0313 -3.2619 35 1 8.4759 -2.8389 -2.2925 36 1 7.6127 -0.7123 -4.8563 37 1 12.2811 -0.5893 -4.7359 38 1 12.9967 -0.2315 -7.1447 39 1 8.4107 -0.4421 -6.6825 40 1 6.1024 0.6590 -3.0076 41 1 5.4940 -0.8976 -3.6345 42 1 3.9195 0.7439 -0.8396 43 1 3.4475 -0.1841 -2.2932 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979512056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:15 Heat of formation + Delta-G solvation = 0.172064 kcal Electronic energy + Delta-G solvation = -24518.976961 eV Core-core repulsion = 21076.247089 eV Total energy + Delta-G solvation = -3442.729872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53512 -40.43383 -37.93050 -37.14658 -35.15662 -33.79964 -32.51634 -31.31411 -30.13171 -28.30409 -26.81600 -25.77852 -23.47604 -22.99305 -21.90565 -21.65139 -21.15760 -20.11403 -19.14072 -18.84199 -18.03071 -17.50758 -16.76720 -16.23164 -15.99326 -15.78764 -15.47521 -15.40099 -15.30588 -14.49300 -14.33944 -14.14762 -13.93760 -13.88814 -13.66485 -13.52896 -13.38239 -13.32090 -13.13242 -12.89721 -12.64922 -12.22994 -12.10936 -12.01959 -11.79223 -11.71069 -11.44511 -11.35707 -10.92070 -10.90700 -10.71473 -10.15480 -9.97120 -9.34517 -9.09012 -8.19628 -5.43709 -0.20389 0.63775 0.97102 1.00600 1.26209 1.35800 1.45708 2.10564 2.33874 2.39142 2.99417 3.27250 3.43294 3.57939 3.77405 3.86507 3.97466 3.99833 4.24725 4.31942 4.34608 4.41541 4.45431 4.48942 4.51562 4.56707 4.61439 4.76736 4.83786 4.87583 4.95934 4.99883 5.06069 5.15212 5.17814 5.20796 5.26894 5.32127 5.36438 5.46763 5.56904 5.65015 6.08845 6.52067 6.72087 7.19361 7.51365 8.10056 9.00994 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023496 B = 0.002696 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.400358 B =10382.225012 C =10963.777312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.039 4.039 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.310 1.310 6 H -0.279 1.279 7 C -0.231 4.231 8 H 0.061 0.939 9 N -0.634 5.634 10 C 0.134 3.866 11 C -0.088 4.088 12 H 0.084 0.916 13 C -0.092 4.092 14 C -0.116 4.116 15 C 0.156 3.844 16 H 0.068 0.932 17 N -0.708 5.708 18 C 0.574 3.426 19 O -0.582 6.582 20 C -0.184 4.184 21 C -0.113 4.113 22 C -0.235 4.235 23 S 0.239 5.761 24 C -0.208 4.208 25 C -0.099 4.099 26 C -0.096 4.096 27 H 0.073 0.927 28 C 0.123 3.877 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.413 0.587 37 H 0.142 0.858 38 H 0.192 0.808 39 H 0.194 0.806 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.013 0.987 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.413 -1.780 -19.597 32.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.233 4.233 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.239 1.239 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.079 0.921 9 N -0.361 5.361 10 C 0.010 3.990 11 C -0.107 4.107 12 H 0.102 0.898 13 C -0.131 4.131 14 C -0.155 4.155 15 C 0.052 3.948 16 H 0.086 0.914 17 N -0.359 5.359 18 C 0.362 3.638 19 O -0.463 6.463 20 C -0.202 4.202 21 C -0.142 4.142 22 C -0.370 4.370 23 S 0.505 5.495 24 C -0.346 4.346 25 C -0.138 4.138 26 C -0.116 4.116 27 H 0.091 0.909 28 C -0.001 4.001 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.250 0.750 37 H 0.160 0.840 38 H 0.209 0.791 39 H 0.211 0.789 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.030 0.970 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 25.496 -1.579 -20.412 32.698 hybrid contribution -0.437 0.787 2.000 2.193 sum 25.059 -0.792 -18.412 31.106 Atomic orbital electron populations 1.69968 1.07041 1.27180 1.56091 1.25570 0.95806 1.00560 1.01406 0.85824 0.77063 0.80429 0.78259 1.19648 1.23945 1.20559 1.18649 0.86678 0.94410 1.36250 0.92072 1.45577 1.09797 1.23841 1.56921 1.21549 0.89899 0.91302 0.96253 1.21983 0.95378 0.94780 0.98581 0.89788 1.20847 0.92501 1.01863 0.97844 1.21444 1.00263 0.95170 0.98624 1.20907 0.92265 0.96360 0.85301 0.91406 1.45828 1.05757 1.73211 1.11091 1.17992 0.82239 0.75438 0.88162 1.90771 1.65728 1.52223 1.37627 1.20245 0.94329 1.12626 0.93003 1.21191 0.93419 1.01466 0.98076 1.25861 1.04870 1.09883 0.96354 1.83002 0.93093 1.65985 1.07420 1.26055 1.06832 1.04462 0.97275 1.21474 0.93738 1.01846 0.96692 1.21645 0.93834 0.97291 0.98788 0.90890 1.21404 0.93354 0.91610 0.93725 0.92878 0.93351 0.95235 0.91992 0.89802 0.90596 0.92130 0.74980 0.84025 0.79051 0.78928 0.90444 0.89234 0.96953 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.23 13.97 21.65 0.30 -60.93 16 2 C -0.04 -2.35 5.44 84.86 0.46 -1.89 16 3 Si 0.95 48.63 24.37 68.60 1.67 50.30 16 4 H -0.27 -12.84 6.86 99.48 0.68 -12.16 16 5 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 6 H -0.28 -13.98 6.87 99.48 0.68 -13.29 16 7 C -0.23 -13.58 10.59 84.03 0.89 -12.69 16 8 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 9 N -0.63 -30.87 3.26 -693.08 -2.26 -33.13 16 10 C 0.13 5.13 6.93 85.99 0.60 5.73 16 11 C -0.09 -2.56 2.48 -10.33 -0.03 -2.59 16 12 H 0.08 2.39 8.04 -2.39 -0.02 2.37 16 13 C -0.09 -2.12 5.61 29.75 0.17 -1.95 16 14 C -0.12 -2.46 5.29 30.05 0.16 -2.30 16 15 C 0.16 3.41 2.42 45.12 0.11 3.52 16 16 H 0.07 1.80 7.58 -2.38 -0.02 1.78 16 17 N -0.71 -13.02 5.03 -445.42 -2.24 -15.26 16 18 C 0.57 13.36 7.72 86.59 0.67 14.03 16 19 O -0.58 -18.46 16.40 -4.16 -0.07 -18.53 16 20 C -0.18 -3.30 5.98 -19.87 -0.12 -3.42 16 21 C -0.11 -1.91 10.10 22.67 0.23 -1.68 16 22 C -0.23 -2.55 11.12 66.64 0.74 -1.81 16 23 S 0.24 1.95 23.02 -56.49 -1.30 0.65 16 24 C -0.21 -2.34 10.38 67.30 0.70 -1.64 16 25 C -0.10 -2.25 5.15 30.37 0.16 -2.09 16 26 C -0.10 -2.97 2.31 -10.63 -0.02 -2.99 16 27 H 0.07 2.30 7.94 -2.39 -0.02 2.28 16 28 C 0.12 5.18 5.07 85.82 0.43 5.61 16 29 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 30 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.49 7.99 -2.39 -0.02 1.47 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 36 H 0.41 4.94 7.09 -92.70 -0.66 4.28 16 37 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.19 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.19 1.10 7.01 -2.91 -0.02 1.08 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 1.77 8.05 -2.39 -0.02 1.75 16 42 H 0.01 0.59 3.22 -2.39 -0.01 0.58 16 43 H 0.03 1.48 8.08 -2.39 -0.02 1.46 16 Total: -1.00 -76.56 349.74 1.57 -74.99 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.32 Total: 8.05 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 5.14 Total: -6.15 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -4.20 Total: -109.31 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.07 Total: -18.53 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.67 Total: 50.30 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.30 Total: 0.65 kcal Total: -76.56 1.57 -74.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979512056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.167 kcal (2) G-P(sol) polarization free energy of solvation -76.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds