Wall clock time and date at job start Tue Mar 31 2020 12:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00150 * 2 1 4 4 H 1.48495 * 109.47250 * 240.00002 * 3 2 1 5 5 H 1.48503 * 109.47033 * 120.00177 * 3 2 1 6 6 H 1.48496 * 109.47345 * 0.02562 * 3 2 1 7 7 C 1.38810 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99811 * 207.03062 * 7 2 1 9 9 N 1.36936 * 120.00426 * 27.03683 * 7 2 1 10 10 C 1.48667 * 125.77903 * 13.08866 * 9 7 2 11 11 C 1.53288 * 103.33102 * 155.57082 * 10 9 7 12 12 H 1.09004 * 111.53876 * 284.28650 * 11 10 9 13 13 C 1.51611 * 116.59142 * 156.07066 * 11 10 9 14 14 C 1.53813 * 107.02349 * 183.91140 * 13 11 10 15 15 C 1.52526 * 111.70122 * 57.53598 * 14 13 11 16 16 H 1.08995 * 109.04204 * 185.39442 * 15 14 13 17 17 N 1.46497 * 109.04293 * 66.44041 * 15 14 13 18 18 C 1.34779 * 119.99764 * 85.00111 * 17 15 14 19 19 O 1.21636 * 119.99872 * 0.02562 * 18 17 15 20 20 C 1.47187 * 120.00089 * 179.97438 * 18 17 15 21 21 C 1.44426 * 123.46266 * 180.02562 * 20 18 17 22 22 C 1.32765 * 113.08613 * 179.97438 * 21 20 18 23 23 S 1.75504 * 110.57721 * 359.97438 * 22 21 20 24 24 C 1.36005 * 123.46054 * 359.70456 * 20 18 17 25 25 C 1.53845 * 111.65997 * 305.95556 * 15 14 13 26 26 C 1.51439 * 107.04530 * 57.20264 * 25 15 14 27 27 H 1.08998 * 110.22767 * 54.38815 * 26 25 15 28 28 C 1.48241 * 125.78872 * 193.40418 * 9 7 2 29 29 H 0.96998 * 120.00704 * 185.85404 * 1 2 3 30 30 H 1.09001 * 110.62516 * 274.14397 * 10 9 7 31 31 H 1.09000 * 110.62831 * 37.16664 * 10 9 7 32 32 H 1.09004 * 109.94253 * 303.29023 * 13 11 10 33 33 H 1.08996 * 109.94457 * 64.52988 * 13 11 10 34 34 H 1.09003 * 109.03424 * 178.10920 * 14 13 11 35 35 H 1.08995 * 109.03239 * 296.96194 * 14 13 11 36 36 H 0.97000 * 120.00356 * 264.99764 * 17 15 14 37 37 H 1.08003 * 123.45899 * 359.95328 * 21 20 18 38 38 H 1.07998 * 124.71247 * 180.02562 * 22 21 20 39 39 H 1.08002 * 124.59549 * 0.02562 * 24 20 18 40 40 H 1.08998 * 109.93671 * 297.81517 * 25 15 14 41 41 H 1.08999 * 109.93769 * 176.58704 * 25 15 14 42 42 H 1.09001 * 110.16797 * 295.88051 * 28 9 7 43 43 H 1.08996 * 110.16859 * 57.67800 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 3.1040 1.6963 1.2125 6 1 1.2853 2.7464 0.0006 7 6 2.0102 -1.2022 -0.0005 8 1 3.0017 -1.2535 0.4245 9 7 1.4377 -2.3231 -0.5401 10 6 0.2201 -2.3528 -1.3926 11 6 0.3834 -3.6474 -2.1970 12 1 1.1213 -3.5346 -2.9913 13 6 -0.8864 -4.2754 -2.7372 14 6 -0.4830 -5.5970 -3.4127 15 6 0.2369 -6.5291 -2.4435 16 1 0.5865 -7.4065 -2.9874 17 7 -0.7024 -6.9548 -1.4030 18 6 -1.5145 -8.0086 -1.6185 19 8 -1.4671 -8.6065 -2.6767 20 6 -2.4578 -8.4367 -0.5729 21 6 -3.3603 -9.5542 -0.7236 22 6 -4.1191 -9.7586 0.3465 23 16 -3.7554 -8.5798 1.5948 24 6 -2.5648 -7.8245 0.6368 25 6 1.4401 -5.8380 -1.7791 26 6 0.9132 -4.5991 -1.0856 27 1 0.1030 -4.8634 -0.4060 28 6 1.9233 -3.7131 -0.3678 29 1 -0.4851 -0.8356 0.0857 30 1 -0.6787 -2.3912 -0.7771 31 1 0.1952 -1.4889 -2.0568 32 1 -1.5806 -4.4721 -1.9202 33 1 -1.3486 -3.6107 -3.4670 34 1 -1.3790 -6.0941 -3.7847 35 1 0.1762 -5.3799 -4.2531 36 1 -0.7399 -6.4782 -0.5589 37 1 -3.4128 -10.1611 -1.6155 38 1 -4.8571 -10.5419 0.4366 39 1 -1.9766 -6.9738 0.9478 40 1 2.1722 -5.5572 -2.5363 41 1 1.8965 -6.5068 -1.0494 42 1 2.9092 -3.8254 -0.8188 43 1 1.9622 -3.9690 0.6910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979512063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:21 Heat of formation + Delta-G solvation = 14.525760 kcal Electronic energy + Delta-G solvation = -24984.577519 eV Core-core repulsion = 21542.470070 eV Total energy + Delta-G solvation = -3442.107449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57442 -39.08309 -37.02581 -35.78010 -33.46320 -32.04299 -31.07373 -29.81292 -28.70332 -26.54676 -25.25368 -24.81890 -22.18042 -21.97704 -20.78757 -19.93524 -19.61738 -18.99473 -18.30600 -17.38852 -17.19530 -15.83756 -15.31218 -15.00091 -14.56057 -14.38053 -14.16964 -13.78277 -13.63372 -13.47136 -13.29056 -13.04553 -12.93288 -12.73063 -12.54112 -12.24030 -11.99207 -11.75367 -11.41766 -11.34559 -11.11475 -10.85076 -10.65281 -10.45200 -10.17694 -10.02715 -9.98086 -9.83414 -9.61769 -9.45059 -9.35972 -9.05746 -8.69237 -8.41893 -6.94823 -6.08348 -3.09844 0.50254 1.25520 1.63455 1.78213 3.10350 3.25635 3.50102 3.54601 3.72170 4.46403 4.56958 4.67623 4.74072 4.84450 4.90790 4.98027 5.10971 5.12828 5.21950 5.42811 5.51598 5.52087 5.53469 5.58358 5.71465 5.78937 5.86207 5.97461 6.00534 6.07343 6.09936 6.12603 6.24048 6.28240 6.40600 6.51017 6.52116 6.64190 6.85904 7.02414 7.09042 7.42992 7.74541 8.13466 8.47465 9.02002 9.82591 10.38055 11.25727 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.003135 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.298717 B = 8928.405914 C = 9822.949759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.027 4.027 3 Si 1.064 2.936 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.608 5.608 10 C 0.155 3.845 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.102 4.102 14 C -0.126 4.126 15 C 0.151 3.849 16 H 0.087 0.913 17 N -0.715 5.715 18 C 0.577 3.423 19 O -0.542 6.542 20 C -0.155 4.155 21 C -0.085 4.085 22 C -0.239 4.239 23 S 0.187 5.813 24 C -0.210 4.210 25 C -0.110 4.110 26 C -0.106 4.106 27 H 0.063 0.937 28 C 0.144 3.856 29 H 0.268 0.732 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.026 0.974 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -19.079 -0.342 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.228 4.228 3 Si 0.893 3.107 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.211 1.211 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.030 3.970 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.140 4.140 14 C -0.165 4.165 15 C 0.047 3.953 16 H 0.105 0.895 17 N -0.368 5.368 18 C 0.363 3.637 19 O -0.420 6.420 20 C -0.173 4.173 21 C -0.114 4.114 22 C -0.374 4.374 23 S 0.453 5.547 24 C -0.348 4.348 25 C -0.148 4.148 26 C -0.125 4.125 27 H 0.081 0.919 28 C 0.019 3.981 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.171 0.829 38 H 0.187 0.813 39 H 0.188 0.812 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.042 -17.497 0.332 18.864 hybrid contribution 0.781 -1.598 -0.781 1.943 sum -6.261 -19.096 -0.449 20.101 Atomic orbital electron populations 1.70787 1.06574 1.30199 1.48792 1.25687 0.96491 1.00858 0.99814 0.83539 0.74805 0.76202 0.76117 1.22183 1.22113 1.21091 1.19773 0.99116 0.87843 1.39393 0.91686 1.45182 1.30429 1.00896 1.57047 1.21311 0.89858 0.94105 0.91753 1.22242 0.96978 0.96471 0.96949 0.90671 1.21299 0.97315 0.95386 1.00012 1.21914 1.00718 0.95816 0.98032 1.21080 0.88545 0.97326 0.88349 0.89526 1.46116 1.39194 1.31789 1.19675 1.17593 0.79943 0.79881 0.86301 1.90773 1.69231 1.55512 1.26514 1.20371 1.02171 0.99784 0.94969 1.21137 0.94366 0.96484 0.99437 1.25533 1.07589 1.06081 0.98219 1.83144 1.31115 1.23026 1.17445 1.25750 1.04807 1.05564 0.98711 1.21610 0.96417 0.96670 1.00127 1.21791 0.99059 0.94467 0.97177 0.91864 1.20990 0.95040 0.85599 0.96494 0.92022 0.95696 0.92941 0.92187 0.91797 0.91737 0.91146 0.76467 0.82902 0.81332 0.81211 0.89956 0.91366 0.95647 0.95790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.83 12.83 55.49 0.71 -27.11 16 2 C -0.03 -0.79 5.12 -17.43 -0.09 -0.88 16 3 Si 1.06 25.47 30.00 -169.99 -5.10 20.37 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.33 -9.45 10.08 -15.06 -0.15 -9.60 16 8 H 0.07 1.84 7.96 -52.49 -0.42 1.42 16 9 N -0.61 -15.27 3.38 -170.27 -0.58 -15.84 16 10 C 0.15 3.52 4.82 -2.70 -0.01 3.51 16 11 C -0.11 -1.84 2.51 -89.78 -0.23 -2.06 16 12 H 0.07 1.32 8.01 -51.93 -0.42 0.90 16 13 C -0.10 -1.48 5.57 -27.01 -0.15 -1.63 16 14 C -0.13 -1.63 5.43 -26.55 -0.14 -1.77 16 15 C 0.15 1.87 2.71 -67.73 -0.18 1.69 16 16 H 0.09 1.12 7.52 -51.93 -0.39 0.73 16 17 N -0.72 -8.61 4.62 -54.77 -0.25 -8.86 16 18 C 0.58 7.73 7.74 -12.63 -0.10 7.63 16 19 O -0.54 -8.86 16.43 5.25 0.09 -8.78 16 20 C -0.15 -1.76 5.98 -104.63 -0.63 -2.38 16 21 C -0.09 -0.86 10.10 -39.02 -0.39 -1.26 16 22 C -0.24 -1.91 11.12 28.86 0.32 -1.59 16 23 S 0.19 1.45 23.02 -107.50 -2.48 -1.02 16 24 C -0.21 -1.99 10.38 29.93 0.31 -1.68 16 25 C -0.11 -1.38 5.37 -27.08 -0.15 -1.53 16 26 C -0.11 -1.66 2.23 -90.35 -0.20 -1.86 16 27 H 0.06 0.96 6.12 -51.93 -0.32 0.64 16 28 C 0.14 2.90 6.98 -3.42 -0.02 2.88 16 29 H 0.27 8.06 5.83 -40.82 -0.24 7.82 16 30 H 0.03 0.61 6.91 -51.93 -0.36 0.25 16 31 H 0.05 1.34 7.76 -51.93 -0.40 0.94 16 32 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.37 5.30 -40.82 -0.22 4.16 16 37 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.17 1.39 7.01 -52.49 -0.37 1.02 16 40 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -33.10 350.90 -10.25 -43.35 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.12 Total: 3.14 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.81 Total: -10.53 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.12 Total: -51.82 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.10 Total: 20.37 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.48 Total: -1.02 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.10 -10.25 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979512063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.880 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds