Wall clock time and date at job start Tue Mar 31 2020 12:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00150 * 2 1 4 4 H 1.48495 * 109.47250 * 240.00002 * 3 2 1 5 5 H 1.48503 * 109.47033 * 120.00177 * 3 2 1 6 6 H 1.48496 * 109.47345 * 0.02562 * 3 2 1 7 7 C 1.38810 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99811 * 207.03062 * 7 2 1 9 9 N 1.36936 * 120.00426 * 27.03683 * 7 2 1 10 10 C 1.48667 * 125.77903 * 13.08866 * 9 7 2 11 11 C 1.53288 * 103.33102 * 155.57082 * 10 9 7 12 12 H 1.09004 * 111.53876 * 284.28650 * 11 10 9 13 13 C 1.51611 * 116.59142 * 156.07066 * 11 10 9 14 14 C 1.53813 * 107.02349 * 183.91140 * 13 11 10 15 15 C 1.52526 * 111.70122 * 57.53598 * 14 13 11 16 16 H 1.08995 * 109.04204 * 185.39442 * 15 14 13 17 17 N 1.46497 * 109.04293 * 66.44041 * 15 14 13 18 18 C 1.34779 * 119.99764 * 85.00111 * 17 15 14 19 19 O 1.21636 * 119.99872 * 0.02562 * 18 17 15 20 20 C 1.47187 * 120.00089 * 179.97438 * 18 17 15 21 21 C 1.44426 * 123.46266 * 180.02562 * 20 18 17 22 22 C 1.32765 * 113.08613 * 179.97438 * 21 20 18 23 23 S 1.75504 * 110.57721 * 359.97438 * 22 21 20 24 24 C 1.36005 * 123.46054 * 359.70456 * 20 18 17 25 25 C 1.53845 * 111.65997 * 305.95556 * 15 14 13 26 26 C 1.51439 * 107.04530 * 57.20264 * 25 15 14 27 27 H 1.08998 * 110.22767 * 54.38815 * 26 25 15 28 28 C 1.48241 * 125.78872 * 193.40418 * 9 7 2 29 29 H 0.96998 * 120.00704 * 185.85404 * 1 2 3 30 30 H 1.09001 * 110.62516 * 274.14397 * 10 9 7 31 31 H 1.09000 * 110.62831 * 37.16664 * 10 9 7 32 32 H 1.09004 * 109.94253 * 303.29023 * 13 11 10 33 33 H 1.08996 * 109.94457 * 64.52988 * 13 11 10 34 34 H 1.09003 * 109.03424 * 178.10920 * 14 13 11 35 35 H 1.08995 * 109.03239 * 296.96194 * 14 13 11 36 36 H 0.97000 * 120.00356 * 264.99764 * 17 15 14 37 37 H 1.08003 * 123.45899 * 359.95328 * 21 20 18 38 38 H 1.07998 * 124.71247 * 180.02562 * 22 21 20 39 39 H 1.08002 * 124.59549 * 0.02562 * 24 20 18 40 40 H 1.08998 * 109.93671 * 297.81517 * 25 15 14 41 41 H 1.08999 * 109.93769 * 176.58704 * 25 15 14 42 42 H 1.09001 * 110.16797 * 295.88051 * 28 9 7 43 43 H 1.08996 * 110.16859 * 57.67800 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 3.1040 1.6963 1.2125 6 1 1.2853 2.7464 0.0006 7 6 2.0102 -1.2022 -0.0005 8 1 3.0017 -1.2535 0.4245 9 7 1.4377 -2.3231 -0.5401 10 6 0.2201 -2.3528 -1.3926 11 6 0.3834 -3.6474 -2.1970 12 1 1.1213 -3.5346 -2.9913 13 6 -0.8864 -4.2754 -2.7372 14 6 -0.4830 -5.5970 -3.4127 15 6 0.2369 -6.5291 -2.4435 16 1 0.5865 -7.4065 -2.9874 17 7 -0.7024 -6.9548 -1.4030 18 6 -1.5145 -8.0086 -1.6185 19 8 -1.4671 -8.6065 -2.6767 20 6 -2.4578 -8.4367 -0.5729 21 6 -3.3603 -9.5542 -0.7236 22 6 -4.1191 -9.7586 0.3465 23 16 -3.7554 -8.5798 1.5948 24 6 -2.5648 -7.8245 0.6368 25 6 1.4401 -5.8380 -1.7791 26 6 0.9132 -4.5991 -1.0856 27 1 0.1030 -4.8634 -0.4060 28 6 1.9233 -3.7131 -0.3678 29 1 -0.4851 -0.8356 0.0857 30 1 -0.6787 -2.3912 -0.7771 31 1 0.1952 -1.4889 -2.0568 32 1 -1.5806 -4.4721 -1.9202 33 1 -1.3486 -3.6107 -3.4670 34 1 -1.3790 -6.0941 -3.7847 35 1 0.1762 -5.3799 -4.2531 36 1 -0.7399 -6.4782 -0.5589 37 1 -3.4128 -10.1611 -1.6155 38 1 -4.8571 -10.5419 0.4366 39 1 -1.9766 -6.9738 0.9478 40 1 2.1722 -5.5572 -2.5363 41 1 1.8965 -6.5068 -1.0494 42 1 2.9092 -3.8254 -0.8188 43 1 1.9622 -3.9690 0.6910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979512063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:20 Heat of formation + Delta-G solvation = -5.397795 kcal Electronic energy + Delta-G solvation = -24985.441469 eV Core-core repulsion = 21542.470070 eV Total energy + Delta-G solvation = -3442.971399 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70863 -40.29665 -37.93387 -37.18568 -34.95514 -33.61593 -32.28119 -30.96583 -30.08232 -28.03599 -26.77714 -25.94265 -23.59053 -22.99726 -22.06211 -21.61284 -20.54718 -20.11644 -19.45228 -19.05337 -18.03763 -16.97956 -16.40374 -16.19495 -16.10047 -15.72765 -15.59796 -15.31873 -15.17036 -14.56910 -14.39339 -14.06822 -13.96298 -13.83003 -13.61670 -13.39011 -13.23030 -13.11236 -12.76493 -12.74136 -12.45253 -12.38967 -12.08246 -11.99675 -11.91501 -11.60228 -11.52386 -11.17436 -10.97989 -10.94002 -10.52285 -10.16391 -9.99121 -9.37764 -9.02533 -8.32563 -5.30027 -0.23487 0.60608 0.95786 1.00024 1.56317 1.64588 1.83262 2.16637 2.33097 2.63394 3.18328 3.41626 3.45828 3.61751 3.71923 3.82057 3.93902 4.02631 4.22427 4.29968 4.34466 4.35835 4.42953 4.46477 4.56994 4.60585 4.71945 4.81256 4.82045 4.89442 4.94500 4.99775 5.03014 5.10187 5.13553 5.16533 5.26490 5.35557 5.36454 5.49843 5.52747 5.63325 6.30857 6.47291 6.88673 7.15877 7.70002 8.29691 9.01634 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.003135 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.298717 B = 8928.405914 C = 9822.949759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.081 4.081 3 Si 1.115 2.885 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.292 1.292 7 C -0.344 4.344 8 H 0.061 0.939 9 N -0.633 5.633 10 C 0.160 3.840 11 C -0.094 4.094 12 H 0.076 0.924 13 C -0.094 4.094 14 C -0.118 4.118 15 C 0.155 3.845 16 H 0.089 0.911 17 N -0.710 5.710 18 C 0.576 3.424 19 O -0.578 6.578 20 C -0.181 4.181 21 C -0.109 4.109 22 C -0.230 4.230 23 S 0.232 5.768 24 C -0.216 4.216 25 C -0.098 4.098 26 C -0.088 4.088 27 H 0.070 0.930 28 C 0.138 3.862 29 H 0.256 0.744 30 H 0.006 0.994 31 H 0.014 0.986 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.405 0.595 37 H 0.148 0.852 38 H 0.196 0.804 39 H 0.180 0.820 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.032 0.968 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 -20.513 0.130 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.277 4.277 3 Si 0.939 3.061 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.218 1.218 7 C -0.473 4.473 8 H 0.079 0.921 9 N -0.360 5.360 10 C 0.035 3.965 11 C -0.113 4.113 12 H 0.095 0.905 13 C -0.132 4.132 14 C -0.156 4.156 15 C 0.051 3.949 16 H 0.107 0.893 17 N -0.362 5.362 18 C 0.363 3.637 19 O -0.460 6.460 20 C -0.199 4.199 21 C -0.138 4.138 22 C -0.365 4.365 23 S 0.498 5.502 24 C -0.354 4.354 25 C -0.136 4.136 26 C -0.107 4.107 27 H 0.088 0.912 28 C 0.014 3.986 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.242 0.758 37 H 0.166 0.834 38 H 0.213 0.787 39 H 0.197 0.803 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.050 0.950 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.797 -18.963 0.822 20.161 hybrid contribution 0.681 -1.176 -0.827 1.591 sum -6.117 -20.139 -0.005 21.047 Atomic orbital electron populations 1.70893 1.07535 1.29533 1.51400 1.27071 0.96617 1.04282 0.99689 0.82858 0.73851 0.72137 0.77257 1.20870 1.19997 1.21773 1.20059 0.99021 0.89403 1.38813 0.92130 1.45497 1.30920 1.02302 1.57310 1.21177 0.88515 0.95545 0.91233 1.22069 0.98553 0.93877 0.96838 0.90522 1.21229 0.95835 0.96124 1.00015 1.21840 1.00884 0.94541 0.98372 1.21025 0.88403 0.97139 0.88341 0.89268 1.46071 1.38830 1.31490 1.19790 1.17907 0.79958 0.79543 0.86248 1.90744 1.70440 1.56727 1.28053 1.20334 1.03052 1.01226 0.95301 1.21186 0.95412 0.96893 1.00309 1.25882 1.06987 1.06244 0.97422 1.83043 1.29308 1.21742 1.16113 1.25978 1.05268 1.05706 0.98487 1.21552 0.96572 0.95015 1.00441 1.21679 0.97938 0.94805 0.96323 0.91174 1.21168 0.96391 0.84032 0.96979 0.93350 0.97630 0.96783 0.92327 0.91791 0.92213 0.89856 0.75794 0.83398 0.78662 0.80260 0.89007 0.89536 0.94989 0.96083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.04 12.83 21.65 0.28 -58.76 16 2 C -0.08 -4.73 5.12 84.86 0.43 -4.30 16 3 Si 1.11 51.84 30.00 68.60 2.06 53.89 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.34 -19.80 10.08 84.03 0.85 -18.95 16 8 H 0.06 3.45 7.96 -2.91 -0.02 3.43 16 9 N -0.63 -32.25 3.38 -692.62 -2.34 -34.59 16 10 C 0.16 7.51 4.82 86.06 0.41 7.93 16 11 C -0.09 -3.17 2.51 -10.25 -0.03 -3.20 16 12 H 0.08 2.60 8.01 -2.38 -0.02 2.58 16 13 C -0.09 -2.63 5.57 30.41 0.17 -2.46 16 14 C -0.12 -2.83 5.43 30.71 0.17 -2.66 16 15 C 0.16 3.51 2.71 45.12 0.12 3.63 16 16 H 0.09 2.09 7.52 -2.39 -0.02 2.08 16 17 N -0.71 -15.98 4.62 -445.42 -2.06 -18.04 16 18 C 0.58 14.98 7.74 86.59 0.67 15.65 16 19 O -0.58 -18.75 16.43 -4.15 -0.07 -18.82 16 20 C -0.18 -3.94 5.98 -19.87 -0.12 -4.06 16 21 C -0.11 -2.12 10.10 22.67 0.23 -1.89 16 22 C -0.23 -3.16 11.12 66.64 0.74 -2.42 16 23 S 0.23 3.03 23.02 -56.49 -1.30 1.73 16 24 C -0.22 -3.73 10.38 67.30 0.70 -3.03 16 25 C -0.10 -2.18 5.37 30.37 0.16 -2.02 16 26 C -0.09 -2.64 2.23 -10.62 -0.02 -2.66 16 27 H 0.07 2.02 6.12 -2.39 -0.01 2.00 16 28 C 0.14 5.48 6.98 85.82 0.60 6.08 16 29 H 0.26 16.03 5.83 -92.71 -0.54 15.49 16 30 H 0.01 0.30 6.91 -2.39 -0.02 0.28 16 31 H 0.01 0.74 7.76 -2.39 -0.02 0.72 16 32 H 0.06 1.66 7.84 -2.39 -0.02 1.65 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.40 8.14 5.30 -92.71 -0.49 7.65 16 37 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.18 2.60 7.01 -2.91 -0.02 2.58 16 40 H 0.09 1.96 8.03 -2.39 -0.02 1.94 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -73.67 350.90 2.41 -71.26 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.76 Total: 17.68 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 5.09 Total: -14.36 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.12 Total: -111.39 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.07 Total: -18.82 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.06 Total: 53.89 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.30 Total: 1.73 kcal Total: -73.67 2.41 -71.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979512063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.863 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds