Wall clock time and date at job start Tue Mar 31 2020 12:22:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86801 * 120.00425 * 2 1
4 4 H 1.48490 * 109.47265 * 274.78466 * 3 2 1
5 5 H 1.48501 * 109.46753 * 34.78535 * 3 2 1
6 6 H 1.48499 * 109.46849 * 154.77943 * 3 2 1
7 7 C 1.38819 * 119.99826 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00000 * 187.94455 * 7 2 1
9 9 N 1.36938 * 119.99780 * 7.94694 * 7 2 1
10 10 C 1.49291 * 127.10177 * 8.10662 * 9 7 2
11 11 C 1.56235 * 106.50771 * 171.33452 * 10 9 7
12 12 C 1.52123 * 100.80507 * 336.54983 * 11 10 9
13 13 N 1.46498 * 111.08534 * 286.05342 * 12 11 10
14 14 C 1.34780 * 119.99693 * 288.30507 * 13 12 11
15 15 O 1.21279 * 120.00462 * 359.97438 * 14 13 12
16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 12
17 17 C 1.50705 * 109.46735 * 179.97438 * 16 14 13
18 18 C 1.33392 * 125.20089 * 89.72147 * 17 16 14
19 19 C 1.38424 * 114.92117 * 179.86015 * 18 17 16
20 20 C 1.33391 * 114.91685 * 0.42408 * 19 18 17
21 21 S 1.75874 * 125.20494 * 270.02355 * 17 16 14
22 22 C 1.51229 * 122.55539 * 151.37540 * 12 11 10
23 23 C 1.55048 * 104.91584 * 219.09706 * 22 12 11
24 24 C 1.56287 * 105.92055 * 6.67215 * 23 22 12
25 25 C 1.42709 * 127.10229 * 188.10189 * 9 7 2
26 26 H 1.09005 * 107.79837 * 103.59903 * 25 9 7
27 27 H 0.97000 * 119.99373 * 359.97438 * 1 2 3
28 28 H 1.09003 * 110.04879 * 290.59366 * 10 9 7
29 29 H 1.08996 * 110.05454 * 52.01637 * 10 9 7
30 30 H 1.08995 * 111.15118 * 218.66399 * 11 10 9
31 31 H 1.09002 * 111.15036 * 94.43992 * 11 10 9
32 32 H 0.96995 * 119.99904 * 108.29820 * 13 12 11
33 33 H 1.09004 * 109.47255 * 299.99408 * 16 14 13
34 34 H 1.08995 * 109.47513 * 60.00093 * 16 14 13
35 35 H 1.07999 * 122.54027 * 0.02562 * 18 17 16
36 36 H 1.07998 * 122.54145 * 180.20436 * 19 18 17
37 37 H 1.08004 * 125.20274 * 179.75282 * 20 19 18
38 38 H 1.08998 * 110.41063 * 337.32393 * 22 12 11
39 39 H 1.09007 * 110.40635 * 99.76286 * 22 12 11
40 40 H 1.09001 * 109.84813 * 247.73198 * 23 22 12
41 41 H 1.08997 * 110.54751 * 125.98571 * 23 22 12
42 42 H 1.09004 * 110.97180 * 266.52740 * 24 23 22
43 43 H 1.09000 * 110.97274 * 142.75313 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.3967 2.1047 -1.3951
5 1 1.5020 2.6213 0.7988
6 1 3.5947 1.4129 0.5966
7 6 2.0102 -1.2022 0.0005
8 1 3.0824 -1.2067 0.1298
9 7 1.3353 -2.3825 -0.1629
10 6 -0.1043 -2.5549 -0.5184
11 6 -0.3133 -4.0777 -0.7981
12 6 1.1042 -4.4993 -1.1548
13 7 1.4747 -4.0252 -2.4905
14 6 0.9245 -4.5912 -3.5830
15 8 0.1232 -5.4932 -3.4604
16 6 1.3052 -4.1031 -4.9571
17 6 0.5557 -4.8955 -5.9970
18 6 -0.6416 -4.5768 -6.4912
19 6 -1.1330 -5.4551 -7.4416
20 6 -0.3386 -6.4918 -7.7127
21 16 1.1225 -6.3858 -6.7394
22 6 1.6224 -5.8991 -0.9118
23 6 3.0834 -5.7057 -0.4300
24 6 3.2771 -4.1647 -0.2561
25 6 1.8630 -3.7016 -0.0286
26 1 1.5250 -4.0999 0.9281
27 1 -0.4849 0.8401 0.0004
28 1 -0.7349 -2.2375 0.3121
29 1 -0.3413 -1.9744 -1.4100
30 1 -0.9927 -4.2341 -1.6359
31 1 -0.6654 -4.5966 0.0934
32 1 2.1158 -3.3040 -2.5886
33 1 1.0508 -3.0474 -5.0511
34 1 2.3773 -4.2331 -5.1047
35 1 -1.1852 -3.6985 -6.1757
36 1 -2.0887 -5.3137 -7.9242
37 1 -0.5591 -7.2765 -8.4213
38 1 1.0391 -6.3905 -0.1331
39 1 1.5938 -6.4803 -1.8335
40 1 3.7745 -6.0887 -1.1809
41 1 3.2431 -6.2140 0.5209
42 1 3.6927 -3.7193 -1.1601
43 1 3.9033 -3.9453 0.6086
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000989915502.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:22:54
Heat of formation + Delta-G solvation = 35.706379 kcal
Electronic energy + Delta-G solvation = -25517.596187 eV
Core-core repulsion = 22076.407199 eV
Total energy + Delta-G solvation = -3441.188988 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.49962 -38.52146 -37.34245 -34.46193 -33.05991 -32.20453 -31.55500 -29.83478
-27.15865 -26.96929 -25.66560 -24.08200 -23.34229 -20.94655 -20.46842 -19.62957
-19.18630 -18.70183 -17.18823 -16.73575 -16.46375 -15.77664 -15.47373 -15.00736
-14.59908 -14.42723 -13.95449 -13.80152 -13.74914 -12.91130 -12.76342 -12.66766
-12.46432 -12.36606 -12.27144 -11.94138 -11.57670 -11.44230 -11.31728 -11.02960
-10.91473 -10.81825 -10.73478 -10.51071 -10.29432 -10.05458 -10.02377 -9.71732
-9.59188 -9.18296 -8.69053 -8.58641 -8.47377 -8.40435 -6.87923 -5.80602
-3.14495 1.01667 1.66311 2.02387 2.77802 3.04751 3.34347 3.40386
3.42635 3.69867 4.41767 4.61090 4.68665 5.04634 5.09234 5.17791
5.24204 5.31042 5.43292 5.47804 5.59378 5.60824 5.63494 5.73530
5.81983 5.92625 5.98178 6.14252 6.14613 6.23024 6.30726 6.31649
6.36284 6.42662 6.49103 6.51643 6.64154 6.81315 6.89110 7.18922
7.44960 7.57969 7.71419 8.04842 8.14975 8.69810 9.08075 9.75522
10.45612 11.32971
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.014917 B = 0.003991 C = 0.003526
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1876.642689 B = 7013.231015 C = 7939.387181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.002 4.002
3 Si 0.908 3.092
4 H -0.289 1.289
5 H -0.291 1.291
6 H -0.280 1.280
7 C -0.234 4.234
8 H 0.079 0.921
9 N -0.583 5.583
10 C 0.180 3.820
11 C -0.137 4.137
12 C 0.134 3.866
13 N -0.691 5.691
14 C 0.514 3.486
15 O -0.537 6.537
16 C -0.076 4.076
17 C -0.143 4.143
18 C -0.133 4.133
19 C -0.129 4.129
20 C -0.221 4.221
21 S 0.099 5.901
22 C -0.111 4.111
23 C -0.116 4.116
24 C -0.114 4.114
25 C 0.157 3.843
26 H 0.022 0.978
27 H 0.253 0.747
28 H 0.049 0.951
29 H 0.044 0.956
30 H 0.067 0.933
31 H 0.065 0.935
32 H 0.403 0.597
33 H 0.112 0.888
34 H 0.100 0.900
35 H 0.138 0.862
36 H 0.137 0.863
37 H 0.160 0.840
38 H 0.068 0.932
39 H 0.069 0.931
40 H 0.058 0.942
41 H 0.062 0.938
42 H 0.064 0.936
43 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.095 -11.397 -11.321 16.360
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.199 4.199
3 Si 0.738 3.262
4 H -0.217 1.217
5 H -0.218 1.218
6 H -0.206 1.206
7 C -0.362 4.362
8 H 0.096 0.904
9 N -0.307 5.307
10 C 0.057 3.943
11 C -0.176 4.176
12 C 0.046 3.954
13 N -0.342 5.342
14 C 0.298 3.702
15 O -0.415 6.415
16 C -0.118 4.118
17 C -0.261 4.261
18 C -0.163 4.163
19 C -0.160 4.160
20 C -0.356 4.356
21 S 0.362 5.638
22 C -0.150 4.150
23 C -0.155 4.155
24 C -0.152 4.152
25 C 0.047 3.953
26 H 0.039 0.961
27 H 0.063 0.937
28 H 0.067 0.933
29 H 0.062 0.938
30 H 0.086 0.914
31 H 0.084 0.916
32 H 0.238 0.762
33 H 0.130 0.870
34 H 0.118 0.882
35 H 0.156 0.844
36 H 0.155 0.845
37 H 0.178 0.822
38 H 0.087 0.913
39 H 0.088 0.912
40 H 0.076 0.924
41 H 0.081 0.919
42 H 0.083 0.917
43 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 3.758 -12.669 -11.041 17.220
hybrid contribution -0.670 2.187 -0.165 2.294
sum 3.088 -10.482 -11.205 15.651
Atomic orbital electron populations
1.69942 1.04986 1.25247 1.55922 1.24808 0.95539 0.97718 1.01885
0.86171 0.78755 0.83764 0.77476 1.21659 1.21785 1.20596 1.19001
0.90824 0.82550 1.43873 0.90356 1.43646 1.06645 0.99226 1.81149
1.21918 0.84506 0.88567 0.99333 1.22755 0.95041 0.99273 1.00538
1.21491 0.96805 0.93871 0.83233 1.45709 1.45504 1.38199 1.04795
1.20237 0.81410 0.82891 0.85651 1.90679 1.33849 1.29981 1.86965
1.20214 1.00728 1.00604 0.90221 1.23806 0.99825 0.99462 1.03027
1.20089 0.95222 1.02149 0.98829 1.20114 1.01163 0.94990 0.99765
1.25525 0.99022 1.04248 1.06850 1.84106 1.20901 1.22514 1.36250
1.21743 0.95723 0.96183 1.01339 1.22707 0.96366 0.95971 1.00424
1.21831 0.97453 0.94491 1.01446 1.20831 0.92568 0.87460 0.94446
0.96094 0.93667 0.93251 0.93807 0.91439 0.91595 0.76191 0.86989
0.88219 0.84396 0.84512 0.82207 0.91339 0.91192 0.92363 0.91923
0.91711 0.91776
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -25.96 10.80 55.49 0.60 -25.36 16
2 C 0.00 -0.06 5.45 -17.43 -0.10 -0.15 16
3 Si 0.91 21.17 29.56 -169.99 -5.03 16.14 16
4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
7 C -0.23 -6.08 10.26 -15.06 -0.15 -6.23 16
8 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16
9 N -0.58 -13.78 3.12 -162.67 -0.51 -14.29 16
10 C 0.18 4.24 5.28 -0.76 0.00 4.24 16
11 C -0.14 -2.70 6.22 -25.44 -0.16 -2.86 16
12 C 0.13 2.38 0.42 -130.71 -0.05 2.33 16
13 N -0.69 -11.50 4.38 -46.58 -0.20 -11.70 16
14 C 0.51 8.33 7.13 -10.98 -0.08 8.25 16
15 O -0.54 -10.29 14.19 5.56 0.08 -10.21 16
16 C -0.08 -0.97 6.20 -29.03 -0.18 -1.15 16
17 C -0.14 -1.91 5.00 -36.00 -0.18 -2.09 16
18 C -0.13 -1.73 10.05 -41.21 -0.41 -2.14 16
19 C -0.13 -1.49 10.18 -41.21 -0.42 -1.91 16
20 C -0.22 -2.42 11.23 29.04 0.33 -2.10 16
21 S 0.10 1.19 23.33 -107.50 -2.51 -1.32 16
22 C -0.11 -1.75 6.01 -26.54 -0.16 -1.91 16
23 C -0.12 -1.62 6.91 -23.88 -0.17 -1.78 16
24 C -0.11 -1.84 6.47 -26.20 -0.17 -2.01 16
25 C 0.16 3.07 2.61 -68.71 -0.18 2.89 16
26 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16
27 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16
28 H 0.05 1.30 7.52 -51.93 -0.39 0.91 16
29 H 0.04 1.13 7.75 -51.93 -0.40 0.73 16
30 H 0.07 1.37 7.17 -51.93 -0.37 1.00 16
31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
32 H 0.40 6.60 7.80 -40.82 -0.32 6.28 16
33 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16
34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16
35 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16
36 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16
37 H 0.16 1.33 8.06 -52.48 -0.42 0.90 16
38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
39 H 0.07 1.15 6.84 -51.93 -0.36 0.80 16
40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
42 H 0.06 1.03 7.37 -51.93 -0.38 0.64 16
43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
LS Contribution 355.87 15.07 5.36 5.36
Total: -1.00 -30.29 355.87 -10.70 -40.99
By element:
Atomic # 1 Polarization: 13.42 SS G_CDS: -6.41 Total: 7.01 kcal
Atomic # 6 Polarization: -4.54 SS G_CDS: -2.09 Total: -6.62 kcal
Atomic # 7 Polarization: -51.24 SS G_CDS: -0.11 Total: -51.35 kcal
Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal
Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -30.29 -10.70 -40.99 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989915502.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.693 kcal
(2) G-P(sol) polarization free energy of solvation -30.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.406 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.706 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds