Wall clock time and date at job start Tue Mar 31 2020 12:22:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86801 * 120.00425 * 2 1
4 4 H 1.48490 * 109.47265 * 274.78466 * 3 2 1
5 5 H 1.48501 * 109.46753 * 34.78535 * 3 2 1
6 6 H 1.48499 * 109.46849 * 154.77943 * 3 2 1
7 7 C 1.38819 * 119.99826 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00000 * 187.94455 * 7 2 1
9 9 N 1.36938 * 119.99780 * 7.94694 * 7 2 1
10 10 C 1.49291 * 127.10177 * 8.10662 * 9 7 2
11 11 C 1.56235 * 106.50771 * 171.33452 * 10 9 7
12 12 C 1.52123 * 100.80507 * 336.54983 * 11 10 9
13 13 N 1.46498 * 111.08534 * 286.05342 * 12 11 10
14 14 C 1.34780 * 119.99693 * 288.30507 * 13 12 11
15 15 O 1.21279 * 120.00462 * 359.97438 * 14 13 12
16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 12
17 17 C 1.50705 * 109.46735 * 179.97438 * 16 14 13
18 18 C 1.33392 * 125.20089 * 89.72147 * 17 16 14
19 19 C 1.38424 * 114.92117 * 179.86015 * 18 17 16
20 20 C 1.33391 * 114.91685 * 0.42408 * 19 18 17
21 21 S 1.75874 * 125.20494 * 270.02355 * 17 16 14
22 22 C 1.51229 * 122.55539 * 151.37540 * 12 11 10
23 23 C 1.55048 * 104.91584 * 219.09706 * 22 12 11
24 24 C 1.56287 * 105.92055 * 6.67215 * 23 22 12
25 25 C 1.42709 * 127.10229 * 188.10189 * 9 7 2
26 26 H 1.09005 * 107.79837 * 103.59903 * 25 9 7
27 27 H 0.97000 * 119.99373 * 359.97438 * 1 2 3
28 28 H 1.09003 * 110.04879 * 290.59366 * 10 9 7
29 29 H 1.08996 * 110.05454 * 52.01637 * 10 9 7
30 30 H 1.08995 * 111.15118 * 218.66399 * 11 10 9
31 31 H 1.09002 * 111.15036 * 94.43992 * 11 10 9
32 32 H 0.96995 * 119.99904 * 108.29820 * 13 12 11
33 33 H 1.09004 * 109.47255 * 299.99408 * 16 14 13
34 34 H 1.08995 * 109.47513 * 60.00093 * 16 14 13
35 35 H 1.07999 * 122.54027 * 0.02562 * 18 17 16
36 36 H 1.07998 * 122.54145 * 180.20436 * 19 18 17
37 37 H 1.08004 * 125.20274 * 179.75282 * 20 19 18
38 38 H 1.08998 * 110.41063 * 337.32393 * 22 12 11
39 39 H 1.09007 * 110.40635 * 99.76286 * 22 12 11
40 40 H 1.09001 * 109.84813 * 247.73198 * 23 22 12
41 41 H 1.08997 * 110.54751 * 125.98571 * 23 22 12
42 42 H 1.09004 * 110.97180 * 266.52740 * 24 23 22
43 43 H 1.09000 * 110.97274 * 142.75313 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.3967 2.1047 -1.3951
5 1 1.5020 2.6213 0.7988
6 1 3.5947 1.4129 0.5966
7 6 2.0102 -1.2022 0.0005
8 1 3.0824 -1.2067 0.1298
9 7 1.3353 -2.3825 -0.1629
10 6 -0.1043 -2.5549 -0.5184
11 6 -0.3133 -4.0777 -0.7981
12 6 1.1042 -4.4993 -1.1548
13 7 1.4747 -4.0252 -2.4905
14 6 0.9245 -4.5912 -3.5830
15 8 0.1232 -5.4932 -3.4604
16 6 1.3052 -4.1031 -4.9571
17 6 0.5557 -4.8955 -5.9970
18 6 -0.6416 -4.5768 -6.4912
19 6 -1.1330 -5.4551 -7.4416
20 6 -0.3386 -6.4918 -7.7127
21 16 1.1225 -6.3858 -6.7394
22 6 1.6224 -5.8991 -0.9118
23 6 3.0834 -5.7057 -0.4300
24 6 3.2771 -4.1647 -0.2561
25 6 1.8630 -3.7016 -0.0286
26 1 1.5250 -4.0999 0.9281
27 1 -0.4849 0.8401 0.0004
28 1 -0.7349 -2.2375 0.3121
29 1 -0.3413 -1.9744 -1.4100
30 1 -0.9927 -4.2341 -1.6359
31 1 -0.6654 -4.5966 0.0934
32 1 2.1158 -3.3040 -2.5886
33 1 1.0508 -3.0474 -5.0511
34 1 2.3773 -4.2331 -5.1047
35 1 -1.1852 -3.6985 -6.1757
36 1 -2.0887 -5.3137 -7.9242
37 1 -0.5591 -7.2765 -8.4213
38 1 1.0391 -6.3905 -0.1331
39 1 1.5938 -6.4803 -1.8335
40 1 3.7745 -6.0887 -1.1809
41 1 3.2431 -6.2140 0.5209
42 1 3.6927 -3.7193 -1.1601
43 1 3.9033 -3.9453 0.6086
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000989915502.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:22:53
Heat of formation + Delta-G solvation = 18.865126 kcal
Electronic energy + Delta-G solvation = -25518.326478 eV
Core-core repulsion = 22076.407199 eV
Total energy + Delta-G solvation = -3441.919280 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.95053 -39.80005 -38.38777 -36.16132 -34.43524 -33.68445 -32.98031 -31.46007
-28.56473 -28.22045 -27.09527 -25.93530 -24.32939 -22.39710 -21.89446 -21.22143
-20.12582 -20.10877 -18.39770 -18.24253 -17.84303 -17.33278 -16.56414 -16.34038
-16.20856 -15.71714 -15.69116 -15.28145 -15.03242 -14.18979 -14.06228 -13.89345
-13.76888 -13.55804 -13.46364 -13.23540 -13.05450 -12.99899 -12.80654 -12.63751
-12.41636 -12.16557 -12.09492 -12.03262 -11.80732 -11.65502 -11.55048 -11.35303
-11.06463 -10.74017 -10.57461 -9.87209 -9.54794 -9.31983 -8.84669 -7.85205
-5.20109 0.08880 0.75839 1.12038 1.49306 1.49610 1.58673 1.76940
1.83797 2.42284 2.51868 3.10148 3.35491 3.68261 3.74636 3.90549
4.02613 4.11070 4.21328 4.27418 4.31439 4.40913 4.42346 4.52880
4.57745 4.62593 4.72855 4.75511 4.82351 4.95312 5.00381 5.07670
5.11963 5.23084 5.24113 5.31495 5.41019 5.43575 5.56664 5.60379
5.61612 5.68130 5.82154 6.18334 6.72575 7.04300 7.39267 7.77434
8.50790 9.28306
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.014917 B = 0.003991 C = 0.003526
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1876.642689 B = 7013.231015 C = 7939.387181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.951 5.951
2 C -0.061 4.061
3 Si 0.972 3.028
4 H -0.287 1.287
5 H -0.303 1.303
6 H -0.266 1.266
7 C -0.233 4.233
8 H 0.089 0.911
9 N -0.595 5.595
10 C 0.194 3.806
11 C -0.126 4.126
12 C 0.143 3.857
13 N -0.692 5.692
14 C 0.514 3.486
15 O -0.567 6.567
16 C -0.069 4.069
17 C -0.167 4.167
18 C -0.145 4.145
19 C -0.144 4.144
20 C -0.215 4.215
21 S 0.099 5.901
22 C -0.106 4.106
23 C -0.103 4.103
24 C -0.108 4.108
25 C 0.146 3.854
26 H 0.010 0.990
27 H 0.245 0.755
28 H 0.011 0.989
29 H 0.012 0.988
30 H 0.059 0.941
31 H 0.075 0.925
32 H 0.404 0.596
33 H 0.120 0.880
34 H 0.125 0.875
35 H 0.136 0.864
36 H 0.158 0.842
37 H 0.188 0.812
38 H 0.074 0.926
39 H 0.065 0.935
40 H 0.079 0.921
41 H 0.081 0.919
42 H 0.069 0.931
43 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.095 -12.860 -12.368 18.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.599 5.599
2 C -0.254 4.254
3 Si 0.801 3.199
4 H -0.214 1.214
5 H -0.230 1.230
6 H -0.190 1.190
7 C -0.361 4.361
8 H 0.107 0.893
9 N -0.318 5.318
10 C 0.070 3.930
11 C -0.165 4.165
12 C 0.055 3.945
13 N -0.342 5.342
14 C 0.300 3.700
15 O -0.447 6.447
16 C -0.111 4.111
17 C -0.284 4.284
18 C -0.176 4.176
19 C -0.174 4.174
20 C -0.350 4.350
21 S 0.362 5.638
22 C -0.145 4.145
23 C -0.141 4.141
24 C -0.147 4.147
25 C 0.037 3.963
26 H 0.028 0.972
27 H 0.054 0.946
28 H 0.030 0.970
29 H 0.030 0.970
30 H 0.078 0.922
31 H 0.093 0.907
32 H 0.240 0.760
33 H 0.138 0.862
34 H 0.143 0.857
35 H 0.154 0.846
36 H 0.175 0.825
37 H 0.205 0.795
38 H 0.092 0.908
39 H 0.084 0.916
40 H 0.097 0.903
41 H 0.100 0.900
42 H 0.087 0.913
43 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 5.802 -14.160 -12.094 19.504
hybrid contribution -1.351 2.595 0.167 2.930
sum 4.451 -11.565 -11.926 17.198
Atomic orbital electron populations
1.70149 1.06540 1.25256 1.57958 1.25586 0.96232 1.00922 1.02672
0.85147 0.77943 0.79601 0.77169 1.21449 1.23001 1.19002 1.19398
0.91420 0.83369 1.41959 0.89309 1.43765 1.06712 1.00413 1.80953
1.21578 0.84462 0.90638 0.96355 1.22598 0.96704 0.96569 1.00655
1.21402 0.94617 0.95082 0.83423 1.45723 1.45618 1.38313 1.04588
1.20777 0.80505 0.82143 0.86571 1.90659 1.35107 1.31402 1.87516
1.20205 1.02229 1.00814 0.87838 1.23947 1.00351 1.00424 1.03724
1.20334 0.95362 1.02559 0.99337 1.20357 1.02272 0.94948 0.99794
1.25916 0.98044 1.04507 1.06523 1.84042 1.21577 1.21808 1.36337
1.21727 0.97093 0.94258 1.01444 1.22641 0.95173 0.94181 1.02056
1.21843 0.94919 0.96020 1.01896 1.21035 0.95433 0.85351 0.94493
0.97230 0.94572 0.97031 0.96952 0.92247 0.90655 0.75976 0.86207
0.85711 0.84618 0.82473 0.79459 0.90759 0.91593 0.90273 0.90014
0.91253 0.91232
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -56.00 10.80 21.65 0.23 -55.77 16
2 C -0.06 -3.30 5.45 84.86 0.46 -2.84 16
3 Si 0.97 43.92 29.56 68.60 2.03 45.94 16
4 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16
5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16
6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16
7 C -0.23 -12.08 10.26 84.04 0.86 -11.22 16
8 H 0.09 4.34 7.84 -2.91 -0.02 4.32 16
9 N -0.60 -28.48 3.12 -668.57 -2.08 -30.56 16
10 C 0.19 9.53 5.28 86.96 0.46 9.99 16
11 C -0.13 -5.07 6.22 31.43 0.20 -4.88 16
12 C 0.14 4.97 0.42 4.32 0.00 4.97 16
13 N -0.69 -22.44 4.38 -419.68 -1.84 -24.27 16
14 C 0.51 16.24 7.13 87.66 0.63 16.87 16
15 O -0.57 -21.43 14.19 -3.03 -0.04 -21.48 16
16 C -0.07 -1.69 6.20 29.10 0.18 -1.51 16
17 C -0.17 -4.27 5.00 24.59 0.12 -4.14 16
18 C -0.15 -3.68 10.05 21.22 0.21 -3.47 16
19 C -0.14 -3.08 10.18 21.22 0.22 -2.86 16
20 C -0.21 -4.24 11.23 66.72 0.75 -3.49 16
21 S 0.10 2.21 23.33 -56.49 -1.32 0.89 16
22 C -0.11 -3.11 6.01 30.72 0.18 -2.92 16
23 C -0.10 -2.49 6.91 32.44 0.22 -2.27 16
24 C -0.11 -3.23 6.47 30.94 0.20 -3.03 16
25 C 0.15 5.58 2.61 46.47 0.12 5.70 16
26 H 0.01 0.42 7.99 -2.38 -0.02 0.40 16
27 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
28 H 0.01 0.64 7.52 -2.39 -0.02 0.62 16
29 H 0.01 0.66 7.75 -2.39 -0.02 0.64 16
30 H 0.06 2.48 7.17 -2.39 -0.02 2.46 16
31 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16
32 H 0.40 12.85 7.80 -92.71 -0.72 12.13 16
33 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16
34 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16
35 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16
36 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16
37 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16
38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
39 H 0.07 2.02 6.84 -2.38 -0.02 2.01 16
40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
42 H 0.07 2.01 7.37 -2.39 -0.02 1.99 16
43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
Total: -1.00 -66.72 355.87 2.09 -64.63
By element:
Atomic # 1 Polarization: 25.41 SS G_CDS: 0.29 Total: 25.70 kcal
Atomic # 6 Polarization: -9.91 SS G_CDS: 4.82 Total: -5.09 kcal
Atomic # 7 Polarization: -106.91 SS G_CDS: -3.69 Total: -110.60 kcal
Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.48 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal
Atomic # 16 Polarization: 2.21 SS G_CDS: -1.32 Total: 0.89 kcal
Total: -66.72 2.09 -64.63 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989915502.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.493 kcal
(2) G-P(sol) polarization free energy of solvation -66.717 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.865 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds