Wall clock time and date at job start Tue Mar 31 2020 12:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48507 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47215 * 300.00007 * 3 2 1 6 6 H 1.48503 * 109.47382 * 60.00123 * 3 2 1 7 7 C 1.38816 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.49302 * 127.10124 * 0.02562 * 9 7 2 11 11 C 1.56231 * 106.50639 * 171.33775 * 10 9 7 12 12 C 1.52130 * 100.81243 * 336.55202 * 11 10 9 13 13 N 1.46497 * 111.48725 * 285.89968 * 12 11 10 14 14 C 1.34782 * 120.00207 * 288.51872 * 13 12 11 15 15 O 1.21289 * 119.99730 * 0.02562 * 14 13 12 16 16 C 1.50694 * 119.99965 * 180.02562 * 14 13 12 17 17 C 1.50707 * 109.47016 * 180.02562 * 16 14 13 18 18 C 1.38427 * 122.54033 * 89.99545 * 17 16 14 19 19 C 1.33385 * 114.91787 * 179.97438 * 18 17 16 20 20 S 1.75884 * 109.59744 * 0.02562 * 19 18 17 21 21 C 1.33383 * 122.53586 * 269.71052 * 17 16 14 22 22 C 1.51224 * 122.12046 * 151.20570 * 12 11 10 23 23 C 1.55692 * 104.60551 * 218.72139 * 22 12 11 24 24 C 1.56282 * 105.93529 * 7.25331 * 23 22 12 25 25 C 1.42712 * 127.10701 * 180.02562 * 9 7 2 26 26 H 1.09001 * 107.79193 * 103.60193 * 25 9 7 27 27 H 0.96998 * 119.99573 * 359.97438 * 1 2 3 28 28 H 1.08998 * 110.04627 * 52.07896 * 10 9 7 29 29 H 1.09001 * 110.04899 * 290.59932 * 10 9 7 30 30 H 1.09003 * 111.15077 * 218.66762 * 11 10 9 31 31 H 1.09000 * 111.18764 * 94.45671 * 11 10 9 32 32 H 0.96994 * 120.00145 * 108.52879 * 13 12 11 33 33 H 1.09000 * 109.47145 * 300.00037 * 16 14 13 34 34 H 1.08998 * 109.47638 * 60.00042 * 16 14 13 35 35 H 1.08000 * 122.53800 * 359.97438 * 18 17 16 36 36 H 1.08005 * 125.20168 * 179.97438 * 19 18 17 37 37 H 1.07995 * 125.20577 * 0.02562 * 21 17 16 38 38 H 1.09007 * 110.40855 * 99.94158 * 22 12 11 39 39 H 1.09001 * 110.51323 * 337.55451 * 22 12 11 40 40 H 1.09003 * 110.16110 * 248.14155 * 23 22 12 41 41 H 1.08994 * 110.16103 * 126.36832 * 23 22 12 42 42 H 1.08999 * 110.97750 * 266.14502 * 24 23 22 43 43 H 1.09004 * 111.00450 * 142.39160 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1560 -2.5726 -0.0005 11 6 -0.4134 -4.0969 -0.2261 12 6 0.8805 -4.5062 -0.9138 13 7 0.9233 -4.0354 -2.3004 14 6 0.1328 -4.6065 -3.2308 15 8 -0.6144 -5.5100 -2.9199 16 6 0.1773 -4.1226 -4.6572 17 6 -0.7948 -4.9196 -5.4886 18 6 -2.1139 -4.5375 -5.6623 19 6 -2.8393 -5.3539 -6.4280 20 16 -1.8380 -6.6909 -6.9787 21 6 -0.4478 -6.0436 -6.1173 22 6 1.4463 -5.9036 -0.7964 23 6 2.9855 -5.6961 -0.6881 24 6 3.2027 -4.1536 -0.5619 25 6 1.8808 -3.7027 -0.0005 26 1 1.7855 -4.1045 1.0082 27 1 -0.4849 0.8401 0.0004 28 1 -0.6045 -1.9943 -0.8083 29 1 -0.5713 -2.2613 0.9579 30 1 -1.2728 -4.2586 -0.8769 31 1 -0.5373 -4.6201 0.7220 32 1 1.5206 -3.3128 -2.5491 33 1 -0.0952 -3.0678 -4.6918 34 1 1.1847 -4.2507 -5.0532 35 1 -2.5245 -3.6458 -5.2119 36 1 -3.8824 -5.2156 -6.6717 37 1 0.5357 -6.4893 -6.0985 38 1 1.2031 -6.4880 -1.6839 39 1 1.0653 -6.3961 0.0982 40 1 3.4794 -6.0728 -1.5838 41 1 3.3717 -6.2033 0.1960 42 1 3.3857 -3.7042 -1.5379 43 1 4.0164 -3.9287 0.1276 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989928824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:05 Heat of formation + Delta-G solvation = 19.935449 kcal Electronic energy + Delta-G solvation = -25602.001098 eV Core-core repulsion = 22160.128231 eV Total energy + Delta-G solvation = -3441.872867 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92360 -40.01433 -38.35066 -36.13609 -34.36396 -33.59106 -32.25468 -31.31220 -28.94293 -28.51557 -27.16557 -25.92967 -24.28093 -22.38205 -21.88555 -21.21236 -20.07191 -19.62717 -18.53781 -18.35332 -17.92070 -17.35524 -16.57379 -16.33780 -16.00568 -15.69323 -15.67381 -15.09628 -14.97826 -14.16894 -14.05014 -13.89468 -13.81359 -13.57578 -13.41787 -13.05353 -13.02355 -12.98575 -12.84048 -12.68294 -12.49022 -12.14065 -12.08070 -11.97943 -11.78191 -11.67869 -11.53476 -11.33893 -11.01822 -10.72797 -10.55220 -9.82420 -9.66174 -9.23100 -8.85450 -7.82215 -5.17876 0.13713 0.81687 1.08919 1.48845 1.50316 1.59573 1.71950 1.84349 2.50395 2.55456 3.12165 3.38350 3.75177 3.90281 3.91469 4.04736 4.12435 4.16072 4.32768 4.38798 4.43648 4.45447 4.54828 4.60127 4.63389 4.66331 4.78826 4.83290 4.96249 5.01273 5.08840 5.13236 5.14117 5.25251 5.30950 5.48558 5.51151 5.57236 5.58298 5.62275 5.70450 5.86799 6.19647 6.78404 7.06299 7.45760 7.78741 8.51399 9.29754 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.003896 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.049096 B = 7185.875930 C = 8196.632148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.061 4.061 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.301 1.301 7 C -0.230 4.230 8 H 0.089 0.911 9 N -0.597 5.597 10 C 0.192 3.808 11 C -0.128 4.128 12 C 0.142 3.858 13 N -0.692 5.692 14 C 0.515 3.485 15 O -0.572 6.572 16 C -0.079 4.079 17 C -0.092 4.092 18 C -0.142 4.142 19 C -0.216 4.216 20 S 0.105 5.895 21 C -0.208 4.208 22 C -0.107 4.107 23 C -0.102 4.102 24 C -0.108 4.108 25 C 0.146 3.854 26 H 0.012 0.988 27 H 0.244 0.756 28 H 0.032 0.968 29 H -0.002 1.002 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.403 0.597 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.182 0.818 37 H 0.177 0.823 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 -12.806 -12.086 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.254 4.254 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.228 1.228 7 C -0.358 4.358 8 H 0.107 0.893 9 N -0.320 5.320 10 C 0.067 3.933 11 C -0.167 4.167 12 C 0.054 3.946 13 N -0.343 5.343 14 C 0.302 3.698 15 O -0.452 6.452 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.173 4.173 19 C -0.352 4.352 20 S 0.368 5.632 21 C -0.344 4.344 22 C -0.146 4.146 23 C -0.140 4.140 24 C -0.147 4.147 25 C 0.037 3.963 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.239 0.761 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.200 0.800 37 H 0.194 0.806 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.634 -14.493 -12.762 19.380 hybrid contribution 0.207 2.993 1.297 3.269 sum 1.841 -11.499 -11.465 16.342 Atomic orbital electron populations 1.70146 1.06390 1.25025 1.58448 1.25547 0.96306 1.00740 1.02846 0.85097 0.78456 0.79974 0.76315 1.18694 1.22145 1.22836 1.19433 0.90884 0.83101 1.42397 0.89305 1.43797 1.01790 1.00432 1.85973 1.21661 0.83468 0.90701 0.97428 1.22615 0.97539 0.96759 0.99794 1.21381 0.96084 0.95114 0.82012 1.45728 1.42733 1.38118 1.07672 1.20869 0.79137 0.81962 0.87856 1.90647 1.40380 1.31590 1.82575 1.20395 1.01294 1.00768 0.89671 1.18475 0.94922 0.97092 1.00013 1.20232 0.93810 1.02262 1.00967 1.25809 1.04694 0.98959 1.05690 1.83964 1.01623 1.26735 1.50854 1.25629 1.03666 1.00007 1.05087 1.21851 0.96174 0.94303 1.02244 1.22746 0.94229 0.94078 1.02924 1.21844 0.95760 0.96084 1.01004 1.21052 0.94531 0.85308 0.95447 0.97028 0.94629 0.94977 0.98417 0.92432 0.90731 0.76084 0.87522 0.85548 0.84634 0.80048 0.80592 0.91673 0.90746 0.90207 0.90081 0.91348 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.61 10.55 21.65 0.23 -55.39 16 2 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 3 Si 0.97 43.94 29.55 68.60 2.03 45.96 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -11.90 10.29 84.04 0.86 -11.03 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.60 -28.56 3.14 -668.55 -2.10 -30.66 16 10 C 0.19 9.47 5.35 86.96 0.46 9.93 16 11 C -0.13 -5.18 6.21 31.43 0.20 -4.99 16 12 C 0.14 4.98 0.40 4.32 0.00 4.99 16 13 N -0.69 -22.78 4.41 -419.67 -1.85 -24.63 16 14 C 0.51 16.46 7.15 87.65 0.63 17.09 16 15 O -0.57 -21.87 14.19 -3.06 -0.04 -21.92 16 16 C -0.08 -1.94 5.96 29.10 0.17 -1.77 16 17 C -0.09 -2.35 4.29 -20.92 -0.09 -2.44 16 18 C -0.14 -3.64 9.98 21.22 0.21 -3.43 16 19 C -0.22 -4.74 11.23 66.72 0.75 -4.00 16 20 S 0.10 2.14 23.34 -56.49 -1.32 0.82 16 21 C -0.21 -4.71 10.98 66.72 0.73 -3.98 16 22 C -0.11 -3.12 6.03 30.94 0.19 -2.93 16 23 C -0.10 -2.45 6.94 32.67 0.23 -2.23 16 24 C -0.11 -3.22 6.46 30.94 0.20 -3.02 16 25 C 0.15 5.56 2.61 46.47 0.12 5.68 16 26 H 0.01 0.50 7.98 -2.39 -0.02 0.48 16 27 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.03 1.77 7.05 -2.39 -0.02 1.76 16 29 H 0.00 -0.13 7.98 -2.39 -0.02 -0.15 16 30 H 0.06 2.44 7.19 -2.39 -0.02 2.42 16 31 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.40 13.17 7.78 -92.71 -0.72 12.45 16 33 H 0.11 2.54 8.13 -2.39 -0.02 2.52 16 34 H 0.13 2.33 8.12 -2.39 -0.02 2.31 16 35 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.06 1.99 6.84 -2.38 -0.02 1.98 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 2.00 7.35 -2.39 -0.02 1.98 16 43 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -66.21 355.30 2.37 -63.84 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.29 Total: 26.96 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.13 Total: -4.99 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -3.72 Total: -110.67 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.04 Total: -21.92 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -66.21 2.37 -63.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989928824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.774 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds