Wall clock time and date at job start Tue Mar 31 2020 12:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00048 * 2 1 4 4 H 1.48491 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46856 * 299.99701 * 3 2 1 6 6 H 1.48498 * 109.46964 * 59.99700 * 3 2 1 7 7 C 1.38814 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00316 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00001 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.50057 * 324.93595 * 10 9 7 12 12 C 1.53046 * 109.52705 * 204.84903 * 10 9 7 13 13 C 1.53033 * 109.53859 * 178.66588 * 12 10 9 14 14 C 1.52763 * 109.38180 * 61.24423 * 13 12 10 15 15 N 1.46925 * 109.00998 * 305.58501 * 14 13 12 16 16 C 1.34776 * 120.63272 * 233.58930 * 15 14 13 17 17 O 1.21699 * 119.99903 * 183.29826 * 16 15 14 18 18 C 1.46588 * 119.99819 * 3.28905 * 16 15 14 19 19 C 1.36644 * 125.45445 * 135.24127 * 18 16 15 20 20 C 1.37479 * 113.29455 * 180.02562 * 19 18 16 21 21 C 1.33817 * 115.10203 * 359.97438 * 20 19 18 22 22 C 1.50691 * 124.52396 * 180.02562 * 21 20 19 23 23 C 1.53000 * 117.50083 * 188.61104 * 22 21 20 24 24 C 1.52992 * 60.00038 * 252.50748 * 23 22 21 25 25 S 1.70615 * 110.95227 * 0.02562 * 21 20 19 26 26 C 1.46929 * 118.73724 * 53.31026 * 15 14 13 27 27 H 0.97004 * 120.00120 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00108 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.46165 * 298.69258 * 12 10 9 30 30 H 1.09000 * 109.45313 * 58.64627 * 12 10 9 31 31 H 1.09004 * 109.49590 * 181.31554 * 13 12 10 32 32 H 1.08999 * 109.50447 * 301.38520 * 13 12 10 33 33 H 1.09000 * 109.50678 * 185.70463 * 14 13 12 34 34 H 1.08998 * 109.43474 * 65.42786 * 14 13 12 35 35 H 1.07993 * 123.35431 * 359.97438 * 19 18 16 36 36 H 1.08001 * 122.44874 * 179.97438 * 20 19 18 37 37 H 1.09009 * 115.55085 * 334.31746 * 22 21 20 38 38 H 1.09004 * 117.50029 * 0.02562 * 23 22 21 39 39 H 1.09006 * 117.49854 * 145.01976 * 23 22 21 40 40 H 1.09000 * 117.50470 * 252.51141 * 24 23 22 41 41 H 1.09004 * 117.49623 * 107.48350 * 24 23 22 42 42 H 1.08996 * 109.58681 * 66.42878 * 26 15 14 43 43 H 1.08994 * 109.58277 * 186.85920 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9683 -3.5514 -0.5897 12 6 1.1803 -4.7542 -0.6056 13 6 1.9572 -6.0723 -0.6363 14 6 2.3233 -6.4783 0.7902 15 7 3.0407 -5.3696 1.4342 16 6 4.2453 -5.5702 2.0044 17 8 4.8022 -4.6583 2.5869 18 6 4.8844 -6.8869 1.9233 19 6 6.1981 -7.1132 1.6230 20 6 6.5321 -8.4468 1.6148 21 6 5.5284 -9.2851 1.8986 22 6 5.6573 -10.7856 1.9487 23 6 4.3703 -11.6009 2.0896 24 6 5.3319 -11.4789 3.2732 25 16 4.0834 -8.4282 2.1963 26 6 2.4228 -4.0366 1.4392 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 0.2818 -4.8761 -0.0007 30 1 0.8991 -4.4747 -1.6209 31 1 1.3398 -6.8480 -1.0895 32 1 2.8681 -5.9444 -1.2210 33 1 2.9621 -7.3611 0.7648 34 1 1.4139 -6.6989 1.3492 35 1 6.9036 -6.3231 1.4124 36 1 7.5314 -8.7925 1.3952 37 1 6.4579 -11.2093 1.3423 38 1 3.4302 -11.0519 2.1456 39 1 4.3240 -12.5612 1.5757 40 1 5.9183 -12.3587 3.5382 41 1 5.0246 -10.8494 4.1085 42 1 1.5217 -4.0538 2.0521 43 1 3.1273 -3.3089 1.8418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000687241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:21 Heat of formation + Delta-G solvation = 17.338428 kcal Electronic energy + Delta-G solvation = -24310.278476 eV Core-core repulsion = 20868.292994 eV Total energy + Delta-G solvation = -3441.985482 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32903 -39.46069 -38.70299 -37.34248 -36.28081 -33.99632 -32.83314 -31.19056 -29.80613 -27.22933 -25.95704 -25.47127 -23.36392 -23.29989 -22.67621 -22.37984 -21.06791 -19.72795 -19.16802 -18.96454 -17.43102 -17.10728 -16.87025 -16.35844 -16.08043 -15.88694 -15.55105 -15.50237 -15.16865 -14.93005 -14.37236 -14.22810 -14.08162 -13.86777 -13.74698 -13.38346 -13.10143 -12.96715 -12.93097 -12.57213 -12.42631 -12.23205 -12.17987 -11.95942 -11.88170 -11.69145 -11.64566 -11.39087 -11.33201 -11.20946 -11.06523 -9.90504 -9.51816 -9.39568 -9.05459 -8.00820 -5.30157 -0.47773 0.29577 0.84110 1.38158 1.42825 1.44134 1.54108 1.73495 2.07028 2.51627 2.97240 3.32053 3.43129 3.51497 3.68762 3.87657 3.96752 3.99887 4.05933 4.13672 4.26690 4.30327 4.32628 4.35205 4.47696 4.52459 4.66746 4.77648 4.81162 4.83381 4.94691 4.99364 5.03098 5.08898 5.13223 5.18955 5.21960 5.33441 5.36284 5.39243 5.41031 5.51362 6.21929 6.28340 6.95820 7.28873 7.99918 8.26114 9.21899 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.002861 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.533444 B = 9783.806233 C =10401.740729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.728 5.728 10 C 0.168 3.832 11 H 0.031 0.969 12 C -0.118 4.118 13 C -0.118 4.118 14 C 0.089 3.911 15 N -0.596 5.596 16 C 0.579 3.421 17 O -0.584 6.584 18 C -0.299 4.299 19 C -0.063 4.063 20 C -0.154 4.154 21 C -0.168 4.168 22 C -0.102 4.102 23 C -0.171 4.171 24 C -0.166 4.166 25 S 0.256 5.744 26 C 0.108 3.892 27 H 0.253 0.747 28 H 0.379 0.621 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.451 -30.515 1.935 31.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.058 3.942 11 H 0.049 0.951 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.033 4.033 15 N -0.328 5.328 16 C 0.367 3.633 17 O -0.466 6.466 18 C -0.418 4.418 19 C -0.096 4.096 20 C -0.183 4.183 21 C -0.288 4.288 22 C -0.122 4.122 23 C -0.209 4.209 24 C -0.204 4.204 25 S 0.525 5.475 26 C -0.018 4.018 27 H 0.062 0.938 28 H 0.211 0.789 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.112 0.888 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.376 -30.323 2.593 31.315 hybrid contribution 1.630 2.302 -0.187 2.827 sum 9.007 -28.022 2.405 29.532 Atomic orbital electron populations 1.69792 1.06270 1.26145 1.59042 1.25480 0.96416 1.00769 1.03323 0.85164 0.78002 0.80164 0.76994 1.19883 1.21340 1.21803 1.19533 0.91009 0.85455 1.41690 0.91782 1.42495 1.05564 1.00493 1.88219 1.20636 0.94764 0.86241 0.92539 0.95056 1.21742 0.98456 0.94082 1.01303 1.21777 1.00983 0.97301 0.95636 1.22365 0.97934 0.88571 0.94476 1.48196 1.18371 1.11116 1.55130 1.17620 0.80674 0.86888 0.78118 1.90799 1.64895 1.45606 1.45320 1.24357 1.00176 0.97257 1.20050 1.20814 0.93321 0.98202 0.97289 1.19964 1.01783 0.90601 1.06001 1.24013 0.98652 1.00033 1.06060 1.20638 1.02513 0.85507 1.03513 1.23231 0.92980 1.02428 1.02231 1.23226 1.03111 1.02900 0.91152 1.82756 1.08647 0.91384 1.64688 1.22330 0.96792 0.82312 1.00345 0.93771 0.78850 0.91069 0.91535 0.86537 0.92002 0.87917 0.88932 0.84034 0.81663 0.84149 0.88783 0.85826 0.86145 0.89181 0.91773 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.21 13.06 21.65 0.28 -58.93 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 47.93 29.55 68.60 2.03 49.96 16 4 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 7 C -0.25 -14.20 9.93 84.03 0.83 -13.37 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -37.48 5.13 -322.56 -1.65 -39.14 16 10 C 0.17 6.93 2.92 45.07 0.13 7.06 16 11 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 12 C -0.12 -3.58 5.36 30.62 0.16 -3.42 16 13 C -0.12 -2.62 6.06 30.53 0.19 -2.43 16 14 C 0.09 2.01 5.85 86.22 0.50 2.52 16 15 N -0.60 -19.68 2.98 -824.54 -2.46 -22.13 16 16 C 0.58 20.84 7.54 86.42 0.65 21.49 16 17 O -0.58 -26.71 16.51 -4.35 -0.07 -26.79 16 18 C -0.30 -8.10 5.49 24.08 0.13 -7.97 16 19 C -0.06 -1.51 10.24 21.72 0.22 -1.29 16 20 C -0.15 -2.72 10.00 21.09 0.21 -2.51 16 21 C -0.17 -2.65 5.94 24.68 0.15 -2.50 16 22 C -0.10 -1.03 6.19 -11.54 -0.07 -1.10 16 23 C -0.17 -1.33 10.00 30.59 0.31 -1.02 16 24 C -0.17 -1.41 10.23 30.59 0.31 -1.09 16 25 S 0.26 4.59 18.54 -56.49 -1.05 3.54 16 26 C 0.11 4.36 6.01 86.36 0.52 4.88 16 27 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.38 20.34 7.80 -92.70 -0.72 19.61 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.95 4.00 -16.29 -0.07 1.88 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 36 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.09 0.80 7.19 -2.39 -0.02 0.78 16 39 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.06 2.56 8.14 -2.39 -0.02 2.55 16 43 H 0.05 2.45 7.02 -2.39 -0.02 2.43 16 Total: -1.00 -74.94 362.10 2.04 -72.89 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.24 Total: 24.83 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.72 Total: -4.23 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -3.83 Total: -120.20 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.07 Total: -26.79 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.05 Total: 3.54 kcal Total: -74.94 2.04 -72.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000687241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.232 kcal (2) G-P(sol) polarization free energy of solvation -74.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds