Wall clock time and date at job start Tue Mar 31 2020 12:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32762 * 124.71288 * 2 1 4 4 C 1.44427 * 113.08634 * 179.97438 * 3 2 1 5 5 C 1.47183 * 123.46244 * 179.97438 * 4 3 2 6 6 O 1.21640 * 119.99872 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00281 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00095 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46909 * 180.02562 * 8 7 5 10 10 C 1.29454 * 117.69515 * 95.00396 * 9 8 7 11 11 C 1.50316 * 123.65460 * 180.85752 * 10 9 8 12 12 N 1.47012 * 109.16472 * 349.02174 * 11 10 9 13 13 C 1.36937 * 121.37477 * 222.96977 * 12 11 10 14 14 H 1.07997 * 120.00386 * 155.96447 * 13 12 11 15 15 C 1.38818 * 120.00162 * 335.96978 * 13 12 11 16 16 N 1.31616 * 119.99424 * 344.51716 * 15 13 12 17 17 Si 1.86793 * 120.00033 * 164.51677 * 15 13 12 18 18 H 1.48507 * 109.47179 * 90.00114 * 17 15 13 19 19 H 1.48501 * 109.47307 * 209.99995 * 17 15 13 20 20 H 1.48499 * 109.47498 * 330.00025 * 17 15 13 21 21 C 1.47334 * 117.25050 * 42.94171 * 12 11 10 22 22 C 1.49972 * 117.69467 * 274.73777 * 9 8 7 23 23 C 1.36012 * 113.07222 * 0.24461 * 4 3 2 24 24 C 1.50697 * 124.58853 * 179.73883 * 23 4 3 25 25 S 1.70442 * 110.82037 * 359.62220 * 23 4 3 26 26 H 1.08999 * 109.46683 * 90.00123 * 1 2 3 27 27 H 1.08997 * 109.47328 * 209.99918 * 1 2 3 28 28 H 1.08996 * 109.47156 * 330.00220 * 1 2 3 29 29 H 1.08005 * 123.45651 * 359.94039 * 3 2 1 30 30 H 0.96999 * 120.00004 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.47308 * 60.00350 * 8 7 5 32 32 H 1.09001 * 109.47300 * 300.00437 * 8 7 5 33 33 H 1.08004 * 118.17621 * 0.87886 * 10 9 8 34 34 H 1.09004 * 109.52565 * 108.92300 * 11 10 9 35 35 H 1.09004 * 109.52817 * 229.11696 * 11 10 9 36 36 H 0.97005 * 119.99607 * 179.97438 * 16 15 13 37 37 H 1.09009 * 109.77415 * 57.81374 * 21 12 11 38 38 H 1.09001 * 109.77952 * 178.61777 * 21 12 11 39 39 H 1.09000 * 109.31400 * 281.29459 * 22 9 8 40 40 H 1.08997 * 109.31188 * 40.72365 * 22 9 8 41 41 H 1.09001 * 109.47421 * 89.99203 * 24 23 4 42 42 H 1.09001 * 109.47529 * 209.99546 * 24 23 4 43 43 H 1.09003 * 109.47019 * 329.99850 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0913 0.0000 4 6 3.6777 0.8003 0.0006 5 6 4.7201 1.8394 0.0002 6 8 5.8946 1.5227 0.0002 7 7 4.3734 3.1418 -0.0003 8 6 5.4109 4.1760 -0.0002 9 6 4.7635 5.5369 -0.0001 10 6 4.5953 6.1231 1.1417 11 6 3.9486 7.4709 1.2989 12 7 3.7995 8.0921 -0.0252 13 6 4.0863 9.4156 -0.2281 14 1 4.3493 9.7660 -1.2152 15 6 4.0390 10.3070 0.8350 16 7 3.4359 9.9654 1.9538 17 14 4.8315 11.9912 0.6776 18 1 3.8376 12.9582 0.1458 19 1 5.2987 12.4451 2.0121 20 1 5.9880 11.9094 -0.2503 21 6 3.3294 7.2317 -1.1249 22 6 4.3652 6.1193 -1.3235 23 6 3.9476 -0.5328 -0.0043 24 6 5.3333 -1.1251 -0.0106 25 16 2.5064 -1.4427 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.8615 2.0939 -0.0009 30 1 3.4368 3.3943 0.0000 31 1 6.0313 4.0685 -0.8899 32 1 6.0307 4.0688 0.8900 33 1 4.9390 5.6157 2.0310 34 1 2.9671 7.3527 1.7583 35 1 4.5732 8.1035 1.9297 36 1 3.4031 10.5881 2.6968 37 1 2.3627 6.7989 -0.8672 38 1 3.2399 7.8179 -2.0395 39 1 5.2469 6.5267 -1.8182 40 1 3.9350 5.3358 -1.9473 41 1 5.6709 -1.2709 1.0155 42 1 5.3161 -2.0847 -0.5272 43 1 6.0156 -0.4479 -0.5246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000913902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:14 Heat of formation + Delta-G solvation = 22.290351 kcal Electronic energy + Delta-G solvation = -23942.403516 eV Core-core repulsion = 20500.632765 eV Total energy + Delta-G solvation = -3441.770751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.01419 -37.96962 -37.16263 -35.02216 -33.24087 -32.87765 -30.97400 -29.83459 -29.47994 -27.23030 -25.49654 -24.42352 -23.20793 -22.68421 -21.09646 -20.92485 -19.32465 -17.69083 -17.37921 -16.94068 -15.70579 -15.59895 -15.37287 -15.01045 -14.49846 -14.29791 -13.97107 -13.79885 -13.66437 -13.46796 -13.40386 -13.37160 -13.13426 -12.89698 -12.27413 -12.22285 -12.06566 -11.79880 -11.75632 -11.57967 -11.36432 -11.17277 -10.93370 -10.74160 -10.41819 -10.33709 -9.85366 -9.80778 -9.60616 -9.02326 -8.84299 -8.70331 -8.56872 -8.08136 -6.77228 -5.82369 -3.21038 0.59842 1.22331 1.64945 1.79371 2.61196 3.34435 3.36461 3.43576 3.46038 3.64390 4.38112 4.47492 4.65734 4.85604 4.97844 5.08357 5.17745 5.21613 5.34055 5.36063 5.38464 5.45603 5.52751 5.58462 5.74503 5.79918 5.82502 5.93719 6.03530 6.09601 6.11920 6.15338 6.31016 6.45905 6.54829 6.70955 6.84341 7.14337 7.23298 7.30454 7.61413 7.70734 7.79999 8.27214 8.35415 9.16884 9.79661 10.37558 11.28152 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024439 B = 0.002508 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.443288 B =11161.067279 C =11788.042153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.201 4.201 3 C -0.110 4.110 4 C -0.169 4.169 5 C 0.576 3.424 6 O -0.544 6.544 7 N -0.713 5.713 8 C 0.158 3.842 9 C -0.167 4.167 10 C -0.124 4.124 11 C 0.194 3.806 12 N -0.595 5.595 13 C -0.246 4.246 14 H 0.068 0.932 15 C -0.001 4.001 16 N -0.910 5.910 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.144 3.856 22 C -0.090 4.090 23 C -0.142 4.142 24 C -0.094 4.094 25 S 0.169 5.831 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.401 0.599 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.254 0.746 37 H 0.023 0.977 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 -22.961 -3.488 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.317 4.317 3 C -0.138 4.138 4 C -0.185 4.185 5 C 0.362 3.638 6 O -0.424 6.424 7 N -0.364 5.364 8 C 0.036 3.964 9 C -0.168 4.168 10 C -0.145 4.145 11 C 0.069 3.931 12 N -0.318 5.318 13 C -0.376 4.376 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.555 5.555 17 Si 0.734 3.266 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.018 3.982 22 C -0.129 4.129 23 C -0.262 4.262 24 C -0.153 4.153 25 S 0.435 5.565 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.166 0.834 30 H 0.236 0.764 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.478 -24.564 -3.345 25.034 hybrid contribution 0.290 2.578 0.109 2.596 sum -3.189 -21.986 -3.235 22.450 Atomic orbital electron populations 1.20353 0.87410 1.03378 1.02949 1.24254 1.00366 0.95943 1.11172 1.21159 0.91014 0.99531 1.02118 1.20133 0.93431 0.93019 1.11920 1.17585 0.87695 0.82156 0.76361 1.90714 1.18807 1.81861 1.51011 1.46055 1.10865 1.05079 1.74391 1.20468 0.89390 0.84660 1.01899 1.20499 1.05163 0.94860 0.96237 1.23292 0.95948 0.99090 0.96126 1.19760 0.97667 0.87441 0.88218 1.44129 1.76595 1.06455 1.04671 1.19172 1.39639 0.83206 0.95543 0.91379 1.24988 0.99691 0.97860 0.97376 1.70007 1.44443 1.36067 1.04975 0.86259 0.79304 0.84059 0.76942 1.21426 1.21552 1.20528 1.20987 0.93402 0.91375 0.92479 1.20790 1.00426 0.98130 0.93581 1.24467 1.01729 0.96630 1.03414 1.20632 0.90408 1.00671 1.03547 1.82964 0.93556 1.08678 1.71320 0.90622 0.91296 0.90225 0.83403 0.76440 0.91510 0.91584 0.88770 0.94111 0.88866 0.93597 0.95904 0.92463 0.91685 0.92917 0.90301 0.91721 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.35 36.01 0.37 -0.15 16 2 C -0.20 -1.81 6.44 -36.18 -0.23 -2.04 16 3 C -0.11 -1.13 9.75 -39.02 -0.38 -1.51 16 4 C -0.17 -2.09 5.98 -104.63 -0.63 -2.72 16 5 C 0.58 8.39 7.79 -12.63 -0.10 8.30 16 6 O -0.54 -9.29 14.06 5.24 0.07 -9.22 16 7 N -0.71 -9.76 5.53 -62.64 -0.35 -10.11 16 8 C 0.16 2.40 5.66 -5.19 -0.03 2.38 16 9 C -0.17 -2.84 5.22 -100.99 -0.53 -3.37 16 10 C -0.12 -2.33 9.47 -35.78 -0.34 -2.67 16 11 C 0.19 4.53 5.23 -5.10 -0.03 4.50 16 12 N -0.60 -14.67 3.01 -173.56 -0.52 -15.19 16 13 C -0.25 -6.68 9.71 -15.06 -0.15 -6.83 16 14 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 15 C 0.00 -0.04 5.01 -17.43 -0.09 -0.12 16 16 N -0.91 -25.93 11.08 55.49 0.61 -25.31 16 17 Si 0.90 21.56 29.58 -169.99 -5.03 16.54 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.14 2.92 6.59 -3.44 -0.02 2.89 16 22 C -0.09 -1.55 5.95 -28.09 -0.17 -1.72 16 23 C -0.14 -1.60 6.34 -35.11 -0.22 -1.82 16 24 C -0.09 -0.98 9.60 36.00 0.35 -0.63 16 25 S 0.17 1.47 22.94 -107.50 -2.47 -1.00 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.15 1.31 7.10 -52.48 -0.37 0.94 16 30 H 0.40 4.86 7.01 -40.82 -0.29 4.58 16 31 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 32 H 0.07 1.04 7.78 -51.93 -0.40 0.63 16 33 H 0.09 1.61 7.73 -52.48 -0.41 1.20 16 34 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 1.31 5.94 -51.93 -0.31 1.00 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -30.79 364.11 -10.67 -41.46 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.30 Total: 2.86 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.19 Total: -5.52 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.25 Total: -50.61 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.47 Total: -1.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.79 -10.67 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000913902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.750 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds