Wall clock time and date at job start Tue Mar 31 2020 12:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32762 * 124.71288 * 2 1 4 4 C 1.44427 * 113.08634 * 179.97438 * 3 2 1 5 5 C 1.47183 * 123.46244 * 179.97438 * 4 3 2 6 6 O 1.21640 * 119.99872 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00281 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00095 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46909 * 180.02562 * 8 7 5 10 10 C 1.29454 * 117.69515 * 95.00396 * 9 8 7 11 11 C 1.50316 * 123.65460 * 180.85752 * 10 9 8 12 12 N 1.47012 * 109.16472 * 349.02174 * 11 10 9 13 13 C 1.36937 * 121.37477 * 222.96977 * 12 11 10 14 14 H 1.07997 * 120.00386 * 155.96447 * 13 12 11 15 15 C 1.38818 * 120.00162 * 335.96978 * 13 12 11 16 16 N 1.31616 * 119.99424 * 344.51716 * 15 13 12 17 17 Si 1.86793 * 120.00033 * 164.51677 * 15 13 12 18 18 H 1.48507 * 109.47179 * 90.00114 * 17 15 13 19 19 H 1.48501 * 109.47307 * 209.99995 * 17 15 13 20 20 H 1.48499 * 109.47498 * 330.00025 * 17 15 13 21 21 C 1.47334 * 117.25050 * 42.94171 * 12 11 10 22 22 C 1.49972 * 117.69467 * 274.73777 * 9 8 7 23 23 C 1.36012 * 113.07222 * 0.24461 * 4 3 2 24 24 C 1.50697 * 124.58853 * 179.73883 * 23 4 3 25 25 S 1.70442 * 110.82037 * 359.62220 * 23 4 3 26 26 H 1.08999 * 109.46683 * 90.00123 * 1 2 3 27 27 H 1.08997 * 109.47328 * 209.99918 * 1 2 3 28 28 H 1.08996 * 109.47156 * 330.00220 * 1 2 3 29 29 H 1.08005 * 123.45651 * 359.94039 * 3 2 1 30 30 H 0.96999 * 120.00004 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.47308 * 60.00350 * 8 7 5 32 32 H 1.09001 * 109.47300 * 300.00437 * 8 7 5 33 33 H 1.08004 * 118.17621 * 0.87886 * 10 9 8 34 34 H 1.09004 * 109.52565 * 108.92300 * 11 10 9 35 35 H 1.09004 * 109.52817 * 229.11696 * 11 10 9 36 36 H 0.97005 * 119.99607 * 179.97438 * 16 15 13 37 37 H 1.09009 * 109.77415 * 57.81374 * 21 12 11 38 38 H 1.09001 * 109.77952 * 178.61777 * 21 12 11 39 39 H 1.09000 * 109.31400 * 281.29459 * 22 9 8 40 40 H 1.08997 * 109.31188 * 40.72365 * 22 9 8 41 41 H 1.09001 * 109.47421 * 89.99203 * 24 23 4 42 42 H 1.09001 * 109.47529 * 209.99546 * 24 23 4 43 43 H 1.09003 * 109.47019 * 329.99850 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0913 0.0000 4 6 3.6777 0.8003 0.0006 5 6 4.7201 1.8394 0.0002 6 8 5.8946 1.5227 0.0002 7 7 4.3734 3.1418 -0.0003 8 6 5.4109 4.1760 -0.0002 9 6 4.7635 5.5369 -0.0001 10 6 4.5953 6.1231 1.1417 11 6 3.9486 7.4709 1.2989 12 7 3.7995 8.0921 -0.0252 13 6 4.0863 9.4156 -0.2281 14 1 4.3493 9.7660 -1.2152 15 6 4.0390 10.3070 0.8350 16 7 3.4359 9.9654 1.9538 17 14 4.8315 11.9912 0.6776 18 1 3.8376 12.9582 0.1458 19 1 5.2987 12.4451 2.0121 20 1 5.9880 11.9094 -0.2503 21 6 3.3294 7.2317 -1.1249 22 6 4.3652 6.1193 -1.3235 23 6 3.9476 -0.5328 -0.0043 24 6 5.3333 -1.1251 -0.0106 25 16 2.5064 -1.4427 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.8615 2.0939 -0.0009 30 1 3.4368 3.3943 0.0000 31 1 6.0313 4.0685 -0.8899 32 1 6.0307 4.0688 0.8900 33 1 4.9390 5.6157 2.0310 34 1 2.9671 7.3527 1.7583 35 1 4.5732 8.1035 1.9297 36 1 3.4031 10.5881 2.6968 37 1 2.3627 6.7989 -0.8672 38 1 3.2399 7.8179 -2.0395 39 1 5.2469 6.5267 -1.8182 40 1 3.9350 5.3358 -1.9473 41 1 5.6709 -1.2709 1.0155 42 1 5.3161 -2.0847 -0.5272 43 1 6.0156 -0.4479 -0.5246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000913902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:13 Heat of formation + Delta-G solvation = 5.052429 kcal Electronic energy + Delta-G solvation = -23943.151009 eV Core-core repulsion = 20500.632765 eV Total energy + Delta-G solvation = -3442.518243 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09376 -39.45260 -38.12180 -36.46786 -34.59995 -33.90315 -32.67429 -31.45255 -30.34573 -28.68588 -26.66670 -25.67122 -24.54951 -24.08972 -22.73448 -21.87362 -20.26114 -19.47896 -18.24941 -18.02150 -17.27960 -16.95987 -16.67263 -16.37866 -15.82597 -15.51024 -15.27226 -15.10617 -14.94436 -14.65921 -14.41524 -14.17630 -14.11071 -13.94200 -13.82558 -13.60745 -13.27689 -12.92607 -12.88707 -12.79183 -12.58674 -12.57545 -12.46705 -12.24720 -12.10962 -11.86217 -11.71682 -11.28448 -10.89587 -10.68344 -10.17131 -9.67020 -9.56071 -9.35419 -8.75510 -7.88963 -5.29963 -0.22230 0.49921 0.89245 0.95617 1.19329 1.46507 1.48500 1.57656 2.31967 2.49238 2.51037 3.28444 3.60945 3.65447 3.80001 3.87260 3.95724 4.13791 4.24942 4.42509 4.52426 4.52566 4.63408 4.63913 4.65846 4.72828 4.79312 4.81999 4.90186 4.90641 5.08984 5.09353 5.17649 5.20302 5.21883 5.37020 5.39908 5.43821 5.47041 5.61080 5.75417 6.14886 6.33454 6.53081 7.13052 7.18317 7.83010 8.36783 9.19671 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024439 B = 0.002508 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.443288 B =11161.067279 C =11788.042153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.201 4.201 3 C -0.124 4.124 4 C -0.191 4.191 5 C 0.574 3.426 6 O -0.575 6.575 7 N -0.707 5.707 8 C 0.169 3.831 9 C -0.139 4.139 10 C -0.141 4.141 11 C 0.206 3.794 12 N -0.615 5.615 13 C -0.257 4.257 14 H 0.070 0.930 15 C -0.054 4.054 16 N -0.939 5.939 17 Si 0.967 3.033 18 H -0.284 1.284 19 H -0.293 1.293 20 H -0.273 1.273 21 C 0.139 3.861 22 C -0.084 4.084 23 C -0.161 4.161 24 C -0.093 4.093 25 S 0.220 5.780 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.410 0.590 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.015 0.985 35 H 0.057 0.943 36 H 0.250 0.750 37 H 0.029 0.971 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 -24.876 -4.677 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.318 4.318 3 C -0.152 4.152 4 C -0.208 4.208 5 C 0.361 3.639 6 O -0.458 6.458 7 N -0.358 5.358 8 C 0.046 3.954 9 C -0.140 4.140 10 C -0.161 4.161 11 C 0.081 3.919 12 N -0.339 5.339 13 C -0.387 4.387 14 H 0.088 0.912 15 C -0.249 4.249 16 N -0.585 5.585 17 Si 0.796 3.204 18 H -0.210 1.210 19 H -0.220 1.220 20 H -0.198 1.198 21 C 0.014 3.986 22 C -0.123 4.123 23 C -0.282 4.282 24 C -0.151 4.151 25 S 0.487 5.513 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.176 0.824 30 H 0.246 0.754 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.229 -26.500 -4.561 27.220 hybrid contribution 0.449 3.047 0.408 3.107 sum -3.781 -23.453 -4.153 24.116 Atomic orbital electron populations 1.20475 0.85441 1.04352 1.03967 1.24675 1.01773 0.95805 1.09557 1.21232 0.90132 1.00593 1.03249 1.20108 0.93836 0.92846 1.14035 1.17941 0.87828 0.82540 0.75543 1.90700 1.20216 1.82325 1.52513 1.45895 1.10953 1.04656 1.74279 1.20246 0.89513 0.83752 1.01932 1.20599 1.02700 0.95189 0.95507 1.22959 0.98051 0.97355 0.97782 1.19397 0.96167 0.89063 0.87297 1.44409 1.77124 1.06413 1.05991 1.19503 1.39030 0.84582 0.95632 0.91222 1.25732 1.00568 1.01294 0.97279 1.70163 1.45831 1.37023 1.05525 0.85274 0.78500 0.80078 0.76597 1.21047 1.21966 1.19759 1.21173 0.94514 0.91712 0.91191 1.20727 0.99577 0.97935 0.94038 1.24763 1.03282 0.97008 1.03124 1.20597 0.89766 1.01152 1.03602 1.82772 0.91447 1.07431 1.69652 0.89482 0.89971 0.89658 0.82438 0.75393 0.91209 0.91977 0.87092 0.96718 0.92482 0.94114 0.95276 0.92217 0.91784 0.89545 0.90187 0.89410 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.35 71.24 0.74 -0.07 16 2 C -0.20 -3.10 6.44 24.51 0.16 -2.95 16 3 C -0.12 -2.33 9.75 22.67 0.22 -2.11 16 4 C -0.19 -4.53 5.98 -19.87 -0.12 -4.65 16 5 C 0.57 16.29 7.79 86.59 0.67 16.96 16 6 O -0.58 -19.60 14.06 -4.16 -0.06 -19.65 16 7 N -0.71 -18.32 5.53 -470.34 -2.60 -20.92 16 8 C 0.17 4.86 5.66 85.63 0.48 5.35 16 9 C -0.14 -4.55 5.22 -15.14 -0.08 -4.63 16 10 C -0.14 -5.29 9.47 27.10 0.26 -5.03 16 11 C 0.21 9.90 5.23 85.41 0.45 10.35 16 12 N -0.62 -30.65 3.01 -703.02 -2.11 -32.76 16 13 C -0.26 -14.12 9.71 84.03 0.82 -13.30 16 14 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 15 C -0.05 -3.01 5.01 84.86 0.43 -2.58 16 16 N -0.94 -55.16 11.08 21.65 0.24 -54.92 16 17 Si 0.97 44.94 29.58 68.60 2.03 46.97 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 C 0.14 5.51 6.59 86.31 0.57 6.08 16 22 C -0.08 -2.72 5.95 29.71 0.18 -2.54 16 23 C -0.16 -3.40 6.34 25.17 0.16 -3.24 16 24 C -0.09 -1.84 9.60 71.24 0.68 -1.16 16 25 S 0.22 3.26 22.94 -56.49 -1.30 1.97 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.16 2.50 7.10 -2.91 -0.02 2.48 16 30 H 0.41 9.19 7.01 -92.71 -0.65 8.54 16 31 H 0.07 2.02 8.11 -2.39 -0.02 2.00 16 32 H 0.06 1.88 7.78 -2.39 -0.02 1.86 16 33 H 0.11 3.76 7.73 -2.91 -0.02 3.74 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 3.12 6.41 -2.38 -0.02 3.11 16 36 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 37 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.06 2.30 7.96 -2.39 -0.02 2.28 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 2.03 5.94 -2.39 -0.01 2.02 16 Total: -1.00 -67.59 364.11 2.19 -65.41 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.37 Total: 17.43 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.61 Total: -3.52 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.47 Total: -108.60 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.06 Total: -19.65 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.30 Total: 1.97 kcal Total: -67.59 2.19 -65.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000913902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.458 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds