Wall clock time and date at job start Tue Mar 31 2020 12:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47458 * 272.94549 * 3 2 1 5 5 H 1.48502 * 109.47263 * 32.94567 * 3 2 1 6 6 H 1.48496 * 109.47162 * 152.94322 * 3 2 1 7 7 C 1.38807 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99568 * 339.34500 * 7 2 1 9 9 N 1.36931 * 120.00452 * 159.34490 * 7 2 1 10 10 C 1.46930 * 120.62949 * 332.62899 * 9 7 2 11 11 C 1.53196 * 108.77749 * 233.58921 * 10 9 7 12 12 C 1.53044 * 109.31127 * 305.36575 * 11 10 9 13 13 N 1.46495 * 109.46163 * 181.38506 * 12 11 10 14 14 C 1.34775 * 119.99868 * 154.99558 * 13 12 11 15 15 O 1.21696 * 120.00265 * 0.02562 * 14 13 12 16 16 C 1.46589 * 119.99449 * 179.97438 * 14 13 12 17 17 C 1.36652 * 125.45252 * 179.97438 * 16 14 13 18 18 C 1.37471 * 113.29359 * 180.02562 * 17 16 14 19 19 C 1.33818 * 115.10650 * 0.02562 * 18 17 16 20 20 C 1.50698 * 124.52737 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.49725 * 240.00224 * 20 19 18 22 22 C 1.53011 * 60.03146 * 252.52182 * 21 20 19 23 23 S 1.70626 * 110.94718 * 0.26645 * 19 18 17 24 24 C 1.53038 * 109.53816 * 61.36268 * 12 11 10 25 25 C 1.46921 * 120.63604 * 152.60972 * 9 7 2 26 26 H 0.97005 * 120.00658 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.58949 * 113.79842 * 10 9 7 28 28 H 1.09000 * 109.70414 * 353.44454 * 10 9 7 29 29 H 1.08996 * 109.49834 * 185.41475 * 11 10 9 30 30 H 1.08996 * 109.49866 * 65.31214 * 11 10 9 31 31 H 1.09001 * 109.45644 * 301.36155 * 12 11 10 32 32 H 0.97004 * 120.00228 * 334.99763 * 13 12 11 33 33 H 1.08003 * 123.35352 * 359.97438 * 17 16 14 34 34 H 1.08003 * 122.44817 * 180.02562 * 18 17 16 35 35 H 1.08998 * 115.55771 * 25.69334 * 20 19 18 36 36 H 1.09005 * 117.49471 * 145.02653 * 21 20 19 37 37 H 1.09000 * 117.50224 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49477 * 107.47819 * 22 21 20 39 39 H 1.08998 * 117.49931 * 252.47721 * 22 21 20 40 40 H 1.08996 * 109.50268 * 58.59045 * 24 12 11 41 41 H 1.09003 * 109.49791 * 178.68332 * 24 12 11 42 42 H 1.09003 * 109.58718 * 246.20083 * 25 9 7 43 43 H 1.09004 * 109.58601 * 6.48187 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4353 2.0825 -1.3982 5 1 1.4801 2.6339 0.7614 6 1 3.5774 1.4231 0.6368 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1075 0.3290 9 7 3.3136 -1.2400 -0.4188 10 6 3.8173 -0.2582 -1.3890 11 6 4.4621 -1.0075 -2.5593 12 6 5.5289 -1.9641 -2.0215 13 7 6.1707 -2.6583 -3.1405 14 6 7.4212 -3.1426 -3.0051 15 8 8.0169 -3.0036 -1.9530 16 6 8.0631 -3.8378 -4.1246 17 6 9.3215 -4.3703 -4.1102 18 6 9.6732 -4.9664 -5.2980 19 6 8.7372 -4.9241 -6.2535 20 6 8.8976 -5.5095 -7.6328 21 6 8.7840 -4.5548 -8.8230 22 6 7.6591 -5.5503 -8.5316 23 16 7.3409 -4.1119 -5.7041 24 6 4.8752 -2.9898 -1.0927 25 6 4.2350 -2.2629 0.0942 26 1 -0.4851 0.8400 0.0004 27 1 4.5596 0.3806 -0.9106 28 1 2.9922 0.3522 -1.7562 29 1 4.9246 -0.2919 -3.2390 30 1 3.6996 -1.5756 -3.0921 31 1 6.2779 -1.3983 -1.4675 32 1 5.6958 -2.7695 -3.9790 33 1 9.9750 -4.3265 -3.2515 34 1 10.6347 -5.4346 -5.4491 35 1 9.6064 -6.3336 -7.7144 36 1 9.4180 -4.7509 -9.6878 37 1 8.5936 -3.5033 -8.6084 38 1 6.7289 -5.1537 -8.1248 39 1 7.5530 -6.4010 -9.2048 40 1 4.1087 -3.5392 -1.6392 41 1 5.6317 -3.6849 -0.7285 42 1 5.0115 -1.7876 0.6936 43 1 3.6845 -2.9758 0.7081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003963711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:28 Heat of formation + Delta-G solvation = 22.746127 kcal Electronic energy + Delta-G solvation = -24004.425391 eV Core-core repulsion = 20562.674404 eV Total energy + Delta-G solvation = -3441.750987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13599 -39.57481 -39.02782 -37.36748 -36.11486 -34.13704 -32.18461 -32.00471 -30.51005 -27.27198 -26.00354 -24.56590 -23.67672 -23.31765 -22.69678 -22.22348 -21.36141 -20.31953 -19.21103 -18.65323 -17.68072 -17.09666 -16.77125 -16.30729 -16.17848 -15.96216 -15.82467 -15.38147 -15.14977 -14.84098 -14.59469 -14.32980 -14.25777 -13.96430 -13.82171 -13.48954 -13.36246 -13.02436 -12.62485 -12.59377 -12.45470 -12.30712 -12.05770 -11.97276 -11.83796 -11.67105 -11.59432 -11.40984 -11.35532 -11.20268 -10.71644 -10.22038 -9.59754 -9.52423 -8.98597 -8.16670 -5.49433 -0.57638 0.38885 0.84127 1.29281 1.31908 1.42864 1.51529 2.00749 2.12578 2.41149 2.93839 3.04531 3.30416 3.45597 3.64861 3.81356 3.84961 3.92543 4.02381 4.16884 4.27642 4.28451 4.32218 4.44958 4.47686 4.58575 4.64644 4.74851 4.81164 4.88027 4.95663 4.96767 5.01203 5.03311 5.09964 5.12133 5.16689 5.18869 5.33632 5.34896 5.40445 5.85726 6.12180 6.38999 6.89299 7.05204 7.60052 8.00660 9.03074 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.002705 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.415149 B =10347.861266 C =10850.963982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.033 4.033 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.311 1.311 6 H -0.265 1.265 7 C -0.249 4.249 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.122 3.878 11 C -0.129 4.129 12 C 0.160 3.840 13 N -0.710 5.710 14 C 0.588 3.412 15 O -0.572 6.572 16 C -0.303 4.303 17 C -0.051 4.051 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.104 4.104 21 C -0.161 4.161 22 C -0.176 4.176 23 S 0.231 5.769 24 C -0.129 4.129 25 C 0.148 3.852 26 H 0.262 0.738 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.407 0.593 33 H 0.150 0.850 34 H 0.167 0.833 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.028 -11.073 -21.049 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.227 4.227 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.240 1.240 6 H -0.190 1.190 7 C -0.379 4.379 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.168 4.168 12 C 0.056 3.944 13 N -0.360 5.360 14 C 0.376 3.624 15 O -0.453 6.453 16 C -0.423 4.423 17 C -0.085 4.085 18 C -0.189 4.189 19 C -0.276 4.276 20 C -0.124 4.124 21 C -0.199 4.199 22 C -0.213 4.213 23 S 0.500 5.500 24 C -0.169 4.169 25 C 0.022 3.978 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.243 0.757 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.159 0.841 36 H 0.139 0.861 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.884 -10.513 -20.928 30.722 hybrid contribution 1.010 0.450 0.950 1.458 sum 20.895 -10.063 -19.977 30.609 Atomic orbital electron populations 1.69956 1.07356 1.27271 1.55548 1.25879 0.95821 1.00828 1.00221 0.85959 0.78601 0.80296 0.77892 1.19417 1.24032 1.18973 1.18856 0.86534 0.93658 1.38827 0.92896 1.44508 1.07824 1.34462 1.47555 1.21373 0.96971 0.92024 0.89994 1.22186 0.97472 0.98760 0.98425 1.20766 0.93908 0.92753 0.87018 1.45933 1.14998 1.57974 1.17096 1.17300 0.81098 0.77652 0.86329 1.90799 1.65030 1.59797 1.29677 1.24512 1.02069 1.15604 1.00090 1.20923 0.93824 0.94407 0.99355 1.20048 1.02308 1.04854 0.91674 1.23892 0.98748 1.04472 1.00459 1.20683 1.03900 1.02923 0.84876 1.23233 1.02028 0.96378 0.98265 1.23238 0.92455 1.03166 1.02487 1.82773 1.15231 1.50145 1.01818 1.22215 0.99295 0.97945 0.97456 1.20998 0.91841 0.90725 0.94190 0.92871 0.94875 0.92142 0.89135 0.90789 0.90809 0.75707 0.83282 0.81523 0.84110 0.86094 0.88880 0.88996 0.86043 0.91799 0.91674 0.95136 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.82 13.97 21.65 0.30 -59.52 16 2 C -0.03 -1.90 5.23 84.86 0.44 -1.46 16 3 Si 0.94 46.31 24.34 68.60 1.67 47.98 16 4 H -0.27 -12.14 6.62 99.48 0.66 -11.48 16 5 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.27 -12.66 6.63 99.48 0.66 -12.00 16 7 C -0.25 -14.16 10.03 84.03 0.84 -13.32 16 8 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 9 N -0.62 -29.25 2.77 -699.09 -1.94 -31.19 16 10 C 0.12 5.05 4.20 86.36 0.36 5.42 16 11 C -0.13 -4.12 5.55 30.67 0.17 -3.95 16 12 C 0.16 5.05 2.41 45.02 0.11 5.16 16 13 N -0.71 -18.85 5.07 -446.47 -2.26 -21.12 16 14 C 0.59 17.21 7.75 86.42 0.67 17.88 16 15 O -0.57 -21.01 16.50 -4.33 -0.07 -21.08 16 16 C -0.30 -7.01 6.45 24.08 0.16 -6.85 16 17 C -0.05 -1.06 10.01 21.72 0.22 -0.84 16 18 C -0.16 -2.47 9.99 21.08 0.21 -2.26 16 19 C -0.16 -2.26 5.93 24.68 0.15 -2.12 16 20 C -0.10 -1.00 6.20 -11.51 -0.07 -1.07 16 21 C -0.16 -1.27 10.23 30.60 0.31 -0.95 16 22 C -0.18 -1.44 10.01 30.62 0.31 -1.14 16 23 S 0.23 3.77 20.82 -56.49 -1.18 2.59 16 24 C -0.13 -4.41 5.65 30.67 0.17 -4.24 16 25 C 0.15 5.98 6.52 86.36 0.56 6.54 16 26 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 27 H 0.03 1.35 7.07 -2.39 -0.02 1.34 16 28 H 0.06 2.72 4.50 -2.39 -0.01 2.71 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 32 H 0.41 8.69 7.72 -92.71 -0.72 7.97 16 33 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.87 7.20 -2.39 -0.02 0.86 16 39 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 2.48 7.93 -2.38 -0.02 2.46 16 Total: -1.00 -71.38 357.76 1.35 -70.03 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.21 Total: 15.48 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 4.61 Total: -3.18 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -3.90 Total: -111.82 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.07 Total: -21.08 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.67 Total: 47.98 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.18 Total: 2.59 kcal Total: -71.38 1.35 -70.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003963711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.777 kcal (2) G-P(sol) polarization free energy of solvation -71.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds